| Name | M8ALDmRmz4unShfckohDCDFpABFKDmABFKDm23yTDmABFKDmFwgDzn_1 |
| Workunit | 1908272 |
| Created | 9 Jul 2019, 8:43:01 UTC |
| Sent | 9 Jul 2019, 9:16:28 UTC |
| Report deadline | 16 Jul 2019, 9:16:28 UTC |
| Received | 10 Jul 2019, 10:45:24 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 2244 |
| Run time | 13 hours 7 min 50 sec |
| CPU time | 13 hours 10 min 28 sec |
| Validate state | Valid |
| Credit | 229.12 |
| Device peak FLOPS | 2.09 GFLOPS |
| Application version | ATLAS Simulation v0.62 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.91 GB |
| Peak swap size | 2.55 GB |
| Peak disk usage | 850.84 MB |
Stderr output
<core_client_version>7.5.1</core_client_version>
<![CDATA[
<stderr_txt>
00:21:11 (9691): wrapper (7.7.26015): starting
00:21:11 (9691): wrapper: running run_atlas (--nthreads 1)
singularity image is /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img
sys.argv = ['run_atlas', '--nthreads', '1']
THREADS=1
Checking for CVMFS
CVMFS is installed
OS:Scientific Linux release 6.10 (Carbon)
This is SLC or CentOS release 6, run the atlas job without Singularity
copy /root/Downloads/BOINC/slots/1/shared/input.tar.gz
copy /root/Downloads/BOINC/slots/1/shared/start_atlas.sh
copy /root/Downloads/BOINC/slots/1/shared/ATLAS.root_0
copy /root/Downloads/BOINC/slots/1/shared/RTE.tar.gz
start atlas job with
cmd = sh start_atlas.sh > runtime_log 2> runtime_log.err
running cmd return value is 0
Moving ./HITS.18514514._019202.pool.root.1 to shared/HITS.pool.root.1
*****************The last 100 lines of the pilot log******************
2019-07-10 11:30:33,752 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-07-10 11:30:33,752 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 18 s
2019-07-10 11:30:33,752 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 8 s
2019-07-10 11:30:33,753 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 47232 s
2019-07-10 11:30:33,753 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 30 s
2019-07-10 11:30:33,753 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-07-10 11:30:33,754 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-07-10 11:30:33,754 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/1/PanDA_Pilot-4410522492/pandatracerlog.txt (ignoring)
2019-07-10 11:30:33,754 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/1/PanDA_Pilot-4410522492/pilotlog.txt
- Error messages from pilotlog.txt -
"CRITICAL": 0,
"ERROR": 0,
"FATAL": 0,
2019-07-10 11:30:33,947 | DEBUG | queue_monitor | pilot.control.job | send_state | wrote heartbeat to file /root/Downloads/BOINC/slots/1/heartbeat.json
2019-07-10 11:30:33,947 | INFO | queue_monitor | pilot.control.job | queue_monitor | job 4410522492 was dequeued from the monitored payloads queue
2019-07-10 11:30:35,087 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-07-10 11:30:35,087 | INFO | retrieve | pilot.util.auxiliary | make_job_report | job summary report
2019-07-10 11:30:35,088 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-07-10 11:30:35,088 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4410522492
2019-07-10 11:30:35,088 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18514514
2019-07-10 11:30:35,088 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none)
2019-07-10 11:30:35,088 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE
2019-07-10 11:30:35,088 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished
2019-07-10 11:30:35,088 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0
2019-07-10 11:30:35,088 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0
2019-07-10 11:30:35,088 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag:
2019-07-10 11:30:35,089 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0
2019-07-10 11:30:35,089 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK
2019-07-10 11:30:35,089 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 47275 s
2019-07-10 11:30:35,089 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 200
2019-07-10 11:30:35,090 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0
2019-07-10 11:30:35,090 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 16313
2019-07-10 11:30:35,090 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: None
2019-07-10 11:30:35,090 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 1
2019-07-10 11:30:35,090 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False
2019-07-10 11:30:35,090 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-07-10 11:30:35,090 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-07-10 11:30:35,090 | INFO | retrieve | pilot.control.job | has_job_completed | job 4410522492 has completed
2019-07-10 11:30:35,090 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called
2019-07-10 11:30:36,094 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [16313]
2019-07-10 11:30:36,094 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 16313
2019-07-10 11:30:36,094 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes
2019-07-10 11:30:37,102 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes
2019-07-10 11:30:37,102 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=16313
2019-07-10 11:30:37,232 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [16313] (in reverse order)
2019-07-10 11:30:37,385 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s)
2019-07-10 11:30:37,386 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs
2019-07-10 11:30:37,386 | INFO | retrieve | pilot.control.job | retrieve | ready for new job
2019-07-10 11:30:37,386 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1
2019-07-10 11:30:37,915 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 62 s)
2019-07-10 11:30:47,429 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1
2019-07-10 11:30:47,430 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /root/Downloads/BOINC/slots/1
2019-07-10 11:30:47,506 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (13713276928 B)
2019-07-10 11:30:47,506 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job
2019-07-10 11:30:47,506 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished
2019-07-10 11:30:47,508 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration
2019-07-10 11:30:47,508 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished
2019-07-10 11:30:47,515 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration
2019-07-10 11:30:47,516 | DEBUG | copytool_out | pilot.control.data | copytool_out | will abort
2019-07-10 11:30:47,538 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration
2019-07-10 11:30:47,576 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished
2019-07-10 11:30:47,579 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended
2019-07-10 11:30:47,616 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set
2019-07-10 11:30:47,616 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished
2019-07-10 11:30:47,626 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 12 threads
2019-07-10 11:30:47,626 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139921993230080)>, <ExcThread(job, started 139921827600128)>, <ExcThread(queue_monitoring, started 139921536825088)>, <ExcThread(validate_pre, started 139921098532608)>, <ExcThread(job_monitor, started 139921547314944)>, <ExcThread(copytool_out, started 139921557804800)>, <ExcThread(failed_post, started 139921067063040)>, <ExcThread(create_data_payload, started 139921796130560)>, <ExcThread(data, started 139921806620416)>, <ExcThread(validate, started 139921817110272)>, <ExcThread(execute_payloads, started 139921056573184)>, <ExcThread(copytool_in, started 139921088042752)>]
2019-07-10 11:30:47,651 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished
2019-07-10 11:30:47,668 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished
2019-07-10 11:30:47,672 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished
2019-07-10 11:30:47,753 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished
2019-07-10 11:30:47,916 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set
2019-07-10 11:30:47,918 | DEBUG | job | pilot.control.job | control | [job] control thread has finished
2019-07-10 11:30:47,937 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 7 threads
2019-07-10 11:30:47,938 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139921993230080)>, <ExcThread(queue_monitoring, started 139921536825088)>, <ExcThread(validate_pre, started 139921098532608)>, <ExcThread(job_monitor, started 139921547314944)>, <ExcThread(copytool_out, started 139921557804800)>, <ExcThread(data, started 139921806620416)>, <ExcThread(execute_payloads, started 139921056573184)>]
2019-07-10 11:30:47,983 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set
2019-07-10 11:30:47,983 | DEBUG | data | pilot.control.data | control | [data] control thread has finished
2019-07-10 11:30:48,041 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 6 threads
2019-07-10 11:30:48,042 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139921993230080)>, <ExcThread(queue_monitoring, started 139921536825088)>, <ExcThread(validate_pre, started 139921098532608)>, <ExcThread(job_monitor, started 139921547314944)>, <ExcThread(copytool_out, started 139921557804800)>, <ExcThread(execute_payloads, started 139921056573184)>]
2019-07-10 11:30:48,187 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished
2019-07-10 11:30:48,243 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 5 threads
2019-07-10 11:30:48,244 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139921993230080)>, <ExcThread(queue_monitoring, started 139921536825088)>, <ExcThread(job_monitor, started 139921547314944)>, <ExcThread(copytool_out, started 139921557804800)>, <ExcThread(execute_payloads, started 139921056573184)>]
2019-07-10 11:30:48,268 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished
2019-07-10 11:30:48,364 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 4 threads
2019-07-10 11:30:48,365 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139921993230080)>, <ExcThread(queue_monitoring, started 139921536825088)>, <ExcThread(job_monitor, started 139921547314944)>, <ExcThread(copytool_out, started 139921557804800)>]
2019-07-10 11:30:48,519 | DEBUG | copytool_out | pilot.control.data | copytool_out | aborting
2019-07-10 11:30:48,520 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished
2019-07-10 11:30:48,580 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 3 threads
2019-07-10 11:30:48,581 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139921993230080)>, <ExcThread(queue_monitoring, started 139921536825088)>, <ExcThread(job_monitor, started 139921547314944)>]
2019-07-10 11:30:50,545 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished
2019-07-10 11:30:50,567 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 2 threads
2019-07-10 11:30:50,567 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139921993230080)>, <ExcThread(job_monitor, started 139921547314944)>]
2019-07-10 11:31:38,943 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 123 s)
2019-07-10 11:31:38,943 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished
2019-07-10 11:31:38,958 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0)
2019-07-10 11:31:38,958 | INFO | MainThread | root | wrap_up | traces error code: 0
2019-07-10 11:31:38,958 | INFO | MainThread | root | wrap_up | pilot has finished
***************diag file************
runtimeenvironments=APPS/HEP/ATLAS-SITE;
Processors=1
WallTime=47423.79s
KernelTime=1343.75s
UserTime=46964.32s
CPUUsage=101%
MaxResidentMemory=2008112kB
AverageResidentMemory=0kB
AverageTotalMemory=0kB
AverageUnsharedMemory=0kB
AverageUnsharedStack=0kB
AverageSharedMemory=0kB
PageSize=4096B
MajorPageFaults=9783
MinorPageFaults=19022232
Swaps=0
ForcedSwitches=574026
WaitSwitches=24854208
Inputs=3375464
Outputs=317008
SocketReceived=0
SocketSent=0
Signals=0
nodename=maeax@APU8S
exitcode=0
******************************WorkDir***********************
insgesamt 391040
drwxrwx--x. 8 root root 4096 10. Jul 13:31 .
drwxr-x--x. 4 root root 4096 10. Jul 00:21 ..
-rw-------. 1 root root 7328357 10. Jul 00:21 agis_ddmendpoints.json
-rw-------. 1 root root 4644338 10. Jul 00:21 agis_schedconf.cvmfs.json
drwx------. 2 root root 4096 10. Jul 00:21 .alrb
drwxr-xr-x. 3 root root 4096 10. Jul 00:21 APPS
drwxr-xr-x. 2 root root 4096 10. Jul 00:21 .arc
-rw-------. 1 root root 549 10. Jul 00:21 .asetup
-rw-------. 1 root root 4198 10. Jul 00:22 .asetup.save
-rw-r--r--. 1 root root 0 10. Jul 00:21 boinc_lockfile
-rw-r--r--. 1 root root 8192 10. Jul 13:31 boinc_mmap_file
-rw-r--r--. 1 root root 537 10. Jul 13:29 boinc_task_state.xml
-rw-r--r--. 1 root root 376012298 10. Jul 00:21 EVNT.17323631._000379.pool.root.1
-rw-------. 1 root root 85179 10. Jul 13:30 heartbeat.json
-rw-r--r--. 1 root root 5469 10. Jul 00:21 init_data.xml
-rw-r--r--. 1 root root 3745771 10. Jul 00:21 input.tar.gz
-rw-r--r--. 1 root root 112 10. Jul 00:21 job.xml
-rw-------. 1 root root 2163435 10. Jul 13:31 log.18514514._019202.job.log.1
-rw-------. 1 root root 353495 10. Jul 13:30 log.18514514._019202.job.log.tgz.1
-rw-------. 1 root root 494 10. Jul 13:31 M8ALDmRmz4unShfckohDCDFpABFKDmABFKDm23yTDmABFKDmFwgDzn.diag
-rw-------. 1 root root 306 10. Jul 13:29 memory_monitor_summary.json
-rw-------. 1 root root 391 10. Jul 13:31 output.list
-rw-------. 1 4871 1028 2871 9. Jul 09:31 pandaJobData.out
drwxrwx---. 2 root root 4096 10. Jul 13:30 PanDA_Pilot-4410522492
drwxrwxr-x. 5 320 320 4096 27. Jun 00:30 pilot2
-rw-r--r--. 1 root root 3736999 8. Jul 13:17 pilot2.tar.gz
-rw-------. 1 root root 2144237 10. Jul 13:31 pilotlog.txt
-rw-r--r--. 1 root root 4468 9. Jul 09:31 queuedata.json
-rw-r--r--. 1 root root 815 10. Jul 00:21 RTE.tar.gz
-rwxr-xr-x. 1 root root 8512 10. Jul 00:21 run_atlas
-rwx------. 1 4871 1028 15232 9. Jul 09:31 runpilot2-wrapper.sh
-rw-r--r--. 1 root root 692 10. Jul 13:31 runtime_log
-rw-r--r--. 1 root root 7087 10. Jul 13:31 runtime_log.err
drwxrwx--x. 2 root root 4096 10. Jul 13:31 shared
-rw-r--r--. 1 root root 8714 10. Jul 00:21 start_atlas.sh
-rw-r--r--. 1 root root 17966 10. Jul 13:31 stderr.txt
-rw-r--r--. 1 root root 107 10. Jul 00:21 wrapper_26015_x86_64-pc-linux-gnu
-rw-r--r--. 1 root root 28 10. Jul 13:31 wrapper_checkpoint.txt
running start_atlas return value is 0
Parent exit 0
child process exit 0
13:31:40 (9691): run_atlas exited; CPU time 46964.731275
13:31:40 (9691): called boinc_finish(0)
</stderr_txt>
]]>
©2024 CERN