| Name | GAOODm2WI3unShfckohDCDFpABFKDmABFKDm6FtPDmABFKDmNj0pkn_1 |
| Workunit | 1907873 |
| Created | 9 Jul 2019, 17:12:54 UTC |
| Sent | 9 Jul 2019, 17:31:19 UTC |
| Report deadline | 16 Jul 2019, 17:31:19 UTC |
| Received | 10 Jul 2019, 0:06:25 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 4008 |
| Run time | 3 hours 56 min 12 sec |
| CPU time | 14 hours 23 min 30 sec |
| Validate state | Valid |
| Credit | 372.32 |
| Device peak FLOPS | 11.35 GFLOPS |
| Application version | ATLAS Simulation v0.62 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.80 GB |
| Peak swap size | 2.56 GB |
| Peak disk usage | 842.51 MB |
Stderr output
<core_client_version>7.14.2</core_client_version>
<![CDATA[
<stderr_txt>
22:00:35 (11011): wrapper (7.7.26015): starting
22:00:35 (11011): wrapper: running run_atlas (--nthreads 4)
singularity image is /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img
sys.argv = ['run_atlas', '--nthreads', '4']
THREADS=4
Checking for CVMFS
CVMFS is installed
OS:CentOS Linux release 7.4.1708 (Core)
This is not SLC6, need to run with Singularity....
Checking Singularity...
Singularity is installed
copy /root/slots/3/shared/ATLAS.root_0
copy /root/slots/3/shared/input.tar.gz
copy /root/slots/3/shared/RTE.tar.gz
copy /root/slots/3/shared/start_atlas.sh
export ATHENA_PROC_NUMBER=4;start atlas job with
Testing the function of Singularity...
check singularity with cmd:singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img hostname
Singularity Works...
cmd = singularity exec --pwd /root/slots/3 -B /cvmfs,/root /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img sh start_atlas.sh > runtime_log 2> runtime_log.err
running cmd return value is 0
Moving ./HITS.18410964._048499.pool.root.1 to shared/HITS.pool.root.1
*****************The last 100 lines of the pilot log******************
2019-07-09 23:56:28,679 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=4 nEvents=200 leak=18.50"
2019-07-09 23:56:28,679 | INFO | queue_monitor | pilot.control.job | get_data_structure | total number of processed events: 200 (read)
2019-07-09 23:56:28,681 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/slots/3/PanDA_Pilot-4405025030/memory_monitor_summary.json
2019-07-09 23:56:28,683 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 10611040, 'maxSwap': 0, 'totRCHAR': 2588537923, 'totRBYTES': 3927392256, 'totWCHAR': 213194830, 'totWBYTES': 213192704, 'maxVMEM': 16714660, 'maxPSS': 2594746}, 'Avg': {'avgRSS': 8752854, 'rateWCHAR': 15240, 'avgVMEM': 13255533, 'avgPSS': 2437364, 'rateRCHAR': 185040, 'avgSwap': 0, 'rateRBYTES': 280748, 'rateWBYTES': 15240}}
2019-07-09 23:56:28,683 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-07-09 23:56:28,683 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-07-09 23:56:28,683 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-07-09 23:56:28,684 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-07-09 23:56:28,684 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 10 s
2019-07-09 23:56:28,684 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 20 s
2019-07-09 23:56:28,684 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-07-09 23:56:28,684 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 20 s
2019-07-09 23:56:28,684 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 7 s
2019-07-09 23:56:28,684 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 14028 s
2019-07-09 23:56:28,685 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 35 s
2019-07-09 23:56:28,685 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-07-09 23:56:28,685 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-07-09 23:56:28,685 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/slots/3/PanDA_Pilot-4405025030/pandatracerlog.txt (ignoring)
2019-07-09 23:56:28,685 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/slots/3/PanDA_Pilot-4405025030/pilotlog.txt
2019-07-09 23:56:28,750 | DEBUG | queue_monitor | pilot.util.auxiliary | get_pilot_log_extracts | dumping warning messages from pilotlog.txt:
2019-07-09 23:56:28,751 | WARNING | queue_monitor | pilot.util.auxiliary | get_log_extracts | detected the following tail of warning/fatal messages in the pilot log:
- Log from pilotlog.txt -2019-07-09 23:56:28,679 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | current memory leak: 18.50 B/s (using 216 data points, chi2=-22350958737.567398)
2019-07-09 23:56:28,679 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=4 nEvents=200 leak=18.50"
2019-07-09 23:56:28,679 | INFO | queue_monitor | pilot.control.job | get_data_structure | total number of processed events: 200 (read)
2019-07-09 23:56:28,681 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/slots/3/PanDA_Pilot-4405025030/memory_monitor_summary.json
2019-07-09 23:56:28,683 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 10611040, 'maxSwap': 0, 'totRCHAR': 2588537923, 'totRBYTES': 3927392256, 'totWCHAR': 213194830, 'totWBYTES': 213192704, 'maxVMEM': 16714660, 'maxPSS': 2594746}, 'Avg': {'avgRSS': 8752854, 'rateWCHAR': 15240, 'avgVMEM': 13255533, 'avgPSS': 2437364, 'rateRCHAR': 185040, 'avgSwap': 0, 'rateRBYTES': 280748, 'rateWBYTES': 15240}}
2019-07-09 23:56:28,683 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-07-09 23:56:28,683 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-07-09 23:56:28,683 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-07-09 23:56:28,684 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-07-09 23:56:28,684 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 10 s
2019-07-09 23:56:28,684 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 20 s
2019-07-09 23:56:28,684 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-07-09 23:56:28,684 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 20 s
2019-07-09 23:56:28,684 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 7 s
2019-07-09 23:56:28,684 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 14028 s
2019-07-09 23:56:28,685 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 35 s
2019-07-09 23:56:28,685 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-07-09 23:56:28,685 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-07-09 23:56:28,685 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/slots/3/PanDA_Pilot-4405025030/pandatracerlog.txt (ignoring)
2019-07-09 23:56:28,685 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/slots/3/PanDA_Pilot-4405025030/pilotlog.txt
- Error messages from pilotlog.txt -
"CRITICAL": 0,
"ERROR": 0,
"FATAL": 0,
2019-07-09 23:56:28,752 | DEBUG | queue_monitor | pilot.control.job | send_state | wrote heartbeat to file /root/slots/3/heartbeat.json
2019-07-09 23:56:28,752 | INFO | queue_monitor | pilot.control.job | queue_monitor | job 4405025030 was dequeued from the monitored payloads queue
2019-07-09 23:56:30,493 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-07-09 23:56:30,494 | INFO | retrieve | pilot.util.auxiliary | make_job_report | job summary report
2019-07-09 23:56:30,494 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-07-09 23:56:30,494 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4405025030
2019-07-09 23:56:30,494 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18410964
2019-07-09 23:56:30,494 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none)
2019-07-09 23:56:30,494 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE
2019-07-09 23:56:30,494 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished
2019-07-09 23:56:30,495 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0
2019-07-09 23:56:30,495 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0
2019-07-09 23:56:30,495 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag:
2019-07-09 23:56:30,495 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0
2019-07-09 23:56:30,495 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK
2019-07-09 23:56:30,495 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 52254 s
2019-07-09 23:56:30,496 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 200
2019-07-09 23:56:30,496 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0
2019-07-09 23:56:30,496 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 18104
2019-07-09 23:56:30,496 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: None
2019-07-09 23:56:30,496 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 4
2019-07-09 23:56:30,496 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False
2019-07-09 23:56:30,496 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-07-09 23:56:30,497 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-07-09 23:56:30,497 | INFO | retrieve | pilot.control.job | has_job_completed | job 4405025030 has completed
2019-07-09 23:56:30,497 | INFO | retrieve | pilot.control.job | retrieve | ready for new job
2019-07-09 23:56:30,497 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1
2019-07-09 23:56:40,547 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1
2019-07-09 23:56:40,547 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /root/slots/3
2019-07-09 23:56:40,569 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (13956546560 B)
2019-07-09 23:56:40,569 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job
2019-07-09 23:56:40,755 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set
2019-07-09 23:56:40,885 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set
2019-07-09 23:56:41,054 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set
2019-07-09 23:56:41,073 | INFO | monitor | pilot.control.monitor | control | monitor control has ended
2019-07-09 23:56:41,153 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration
2019-07-09 23:56:41,154 | DEBUG | copytool_out | pilot.control.data | copytool_out | will abort
2019-07-09 23:56:41,165 | INFO | validate_post | pilot.control.payload | validate_post | validate_post has finished
2019-07-09 23:56:41,274 | DEBUG | copytool_in | pilot.control.data | copytool_in | copytool_in ended since graceful_stop has been set
2019-07-09 23:56:41,453 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration
2019-07-09 23:56:42,025 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration
2019-07-09 23:56:42,025 | INFO | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor has finished
2019-07-09 23:56:42,156 | DEBUG | copytool_out | pilot.control.data | copytool_out | aborting
2019-07-09 23:56:42,156 | DEBUG | copytool_out | pilot.control.data | copytool_out | copytool_out has finished
2019-07-09 23:56:44,458 | INFO | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue monitor has finished
2019-07-09 23:56:44,965 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 61 s)
2019-07-09 23:56:44,966 | INFO | job_monitor | pilot.control.job | job_monitor | job monitor has finished
2019-07-09 23:56:44,966 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0)
2019-07-09 23:56:44,967 | INFO | MainThread | root | wrap_up | traces error code: 0
2019-07-09 23:56:44,967 | INFO | MainThread | root | wrap_up | pilot has finished
***************diag file************
runtimeenvironments=APPS/HEP/ATLAS-SITE;
Processors=1
WallTime=14158.45s
KernelTime=799.70s
UserTime=51809.52s
CPUUsage=371%
MaxResidentMemory=1910592kB
AverageResidentMemory=0kB
AverageTotalMemory=0kB
AverageUnsharedMemory=0kB
AverageUnsharedStack=0kB
AverageSharedMemory=0kB
PageSize=4096B
MajorPageFaults=23700
MinorPageFaults=14665466
Swaps=0
ForcedSwitches=4646710
WaitSwitches=9989473
Inputs=7827932
Outputs=496768
SocketReceived=0
SocketSent=0
Signals=0
nodename=maeax@HPi7COS7
exitcode=0
******************************WorkDir***********************
insgesamt 383072
drwxrwx--x. 8 root root 4096 10. Jul 01:56 .
drwxrwx--x. 7 root root 51 29. Jun 17:26 ..
-rw-------. 1 root root 7328357 9. Jul 22:01 agis_ddmendpoints.json
-rw-------. 1 root root 4644341 9. Jul 22:01 agis_schedconf.cvmfs.json
drwx------. 2 root root 6 9. Jul 22:00 .alrb
drwxr-xr-x. 3 root root 17 9. Jul 22:00 APPS
drwxr-xr-x. 2 root root 6 9. Jul 22:01 .arc
-rw-------. 1 root root 533 9. Jul 22:00 .asetup
-rw-------. 1 root root 4182 9. Jul 22:01 .asetup.save
-rw-r--r--. 1 root root 0 9. Jul 22:00 boinc_lockfile
-rw-r--r--. 1 root root 8192 10. Jul 01:56 boinc_mmap_file
-rw-r--r--. 1 root root 537 10. Jul 01:47 boinc_task_state.xml
-rw-r--r--. 1 root root 377238902 9. Jul 22:00 EVNT.17324035._000936.pool.root.1
-rw-------. 1 root root 497 10. Jul 01:56 GAOODm2WI3unShfckohDCDFpABFKDmABFKDm6FtPDmABFKDmNj0pkn.diag
-rw-------. 1 root root 58819 10. Jul 01:56 heartbeat.json
-rw-r--r--. 1 root root 5867 9. Jul 22:00 init_data.xml
-rw-r--r--. 1 root root 246318 9. Jul 22:00 input.tar.gz
-rw-r--r--. 1 root root 112 9. Jul 22:00 job.xml
-rw-------. 1 root root 703174 10. Jul 01:56 log.18410964._048499.job.log.1
-rw-------. 1 root root 850111 10. Jul 01:56 log.18410964._048499.job.log.tgz.1
-rw-------. 1 root root 313 10. Jul 01:55 memory_monitor_summary.json
-rw-------. 1 root root 391 10. Jul 01:56 output.list
-rw-------. 1 4871 1028 2887 4. Jul 17:08 pandaJobData.out
drwxrwx---. 3 root root 4096 10. Jul 01:56 PanDA_Pilot-4405025030
drwxr-xr-x. 3 501 games 195 31. Mai 14:36 pilot2
-rw-r--r--. 1 root root 237372 24. Jun 09:16 pilot2.tar.gz
-rw-------. 1 root root 682878 10. Jul 01:56 pilotlog.txt
-rw-r--r--. 1 root root 4468 4. Jul 17:08 queuedata.json
-rw-r--r--. 1 root root 815 9. Jul 22:00 RTE.tar.gz
-rwxr-xr-x. 1 root root 8512 9. Jul 22:00 run_atlas
-rwx------. 1 4871 1028 15232 4. Jul 17:08 runpilot2-wrapper.sh
-rw-r--r--. 1 root root 692 10. Jul 01:56 runtime_log
-rw-r--r--. 1 root root 6805 10. Jul 01:56 runtime_log.err
drwxrwx--x. 2 root root 131 10. Jul 01:56 shared
-rw-r--r--. 1 root root 8743 9. Jul 22:00 start_atlas.sh
-rw-r--r--. 1 root root 16949 10. Jul 01:56 stderr.txt
-rw-r--r--. 1 root root 107 9. Jul 22:00 wrapper_26015_x86_64-pc-linux-gnu
-rw-r--r--. 1 root root 28 10. Jul 01:56 wrapper_checkpoint.txt
running start_atlas return value is 0
Parent exit 0
child process exit 0
01:56:45 (11011): run_atlas exited; CPU time 51810.039939
01:56:45 (11011): called boinc_finish(0)
</stderr_txt>
]]>
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