Stderr output

<core_client_version>7.6.31</core_client_version>
<![CDATA[
<stderr_txt>
04:11:43 (31043): wrapper (7.7.26015): starting
04:11:43 (31043): wrapper: running run_atlas (--nthreads 8)
singularity image is /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img
sys.argv = ['run_atlas', '--nthreads', '8']
THREADS=8
Checking for CVMFS
CVMFS is installed
OS:cat: /etc/redhat-release: No such file or directory

This is not SLC6, need to run with Singularity....
Checking Singularity...
Singularity is installed
copy /var/lib/boinc-client/slots/36/shared/start_atlas.sh
copy /var/lib/boinc-client/slots/36/shared/ATLAS.root_0
copy /var/lib/boinc-client/slots/36/shared/RTE.tar.gz
copy /var/lib/boinc-client/slots/36/shared/input.tar.gz
export ATHENA_PROC_NUMBER=8;start atlas job with 
Testing the function of Singularity...
check singularity with cmd:singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img hostname
Singularity Works...
cmd = singularity exec --pwd /var/lib/boinc-client/slots/36 -B /cvmfs,/var /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img sh start_atlas.sh > runtime_log 2> runtime_log.err
running cmd return value is 0
Moving ./HITS.18722183._002943.pool.root.1 to shared/HITS.pool.root.1
*****************The last 100 lines of the pilot log******************
2019-07-30 12:50:45,155 | DEBUG    | retrieve            | pilot.control.job                | retrieve                  | getjob_requests=1
2019-07-30 12:50:55,201 | DEBUG    | retrieve            | pilot.control.job                | proceed_with_getjob       | proceed_with_getjob called with getjob_requests=1
2019-07-30 12:50:55,201 | DEBUG    | retrieve            | pilot.util.monitoring            | check_local_space         | checking local space on /var/lib/boinc-client/slots/36
2019-07-30 12:50:55,212 | INFO     | retrieve            | pilot.util.monitoring            | check_local_space         | sufficient remaining disk space (138747576320 B)
2019-07-30 12:50:55,212 | WARNING  | retrieve            | pilot.control.job                | proceed_with_getjob       | since timefloor is set to 0, pilot was only allowed to run one job
2019-07-30 12:50:55,212 | DEBUG    | retrieve            | pilot.control.job                | retrieve                  | [job] retrieve thread has finished
2019-07-30 12:50:55,220 | WARNING  | queue_monitor       | pilot.util.common                | should_abort              | job:queue_monitor:received graceful stop - abort after this iteration
2019-07-30 12:50:55,220 | DEBUG    | queue_monitor       | pilot.control.job                | queue_monitor             | [job] queue monitor thread has finished
2019-07-30 12:50:55,232 | WARNING  | queue_monitoring    | pilot.util.common                | should_abort              | data:queue_monitoring:received graceful stop - abort after this iteration
2019-07-30 12:50:55,257 | WARNING  | copytool_out        | pilot.util.common                | should_abort              | data:copytool_out:received graceful stop - abort after this iteration
2019-07-30 12:50:55,258 | DEBUG    | copytool_out        | pilot.control.data               | copytool_out              | will abort 
2019-07-30 12:50:55,331 | DEBUG    | job                 | pilot.control.job                | control                   | job control ending since graceful_stop has been set
2019-07-30 12:50:55,331 | DEBUG    | job                 | pilot.control.job                | control                   | [job] control thread has finished
2019-07-30 12:50:55,388 | INFO     | validate_pre        | pilot.control.payload            | validate_pre              | [payload] validate_pre thread has finished
2019-07-30 12:50:55,406 | INFO     | monitor             | pilot.control.monitor            | control                   | [monitor] control thread has ended
2019-07-30 12:50:55,407 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | thread count now at 12 threads
2019-07-30 12:50:55,407 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | enumerate: [<_MainThread(MainThread, started 139732855428864)>, <ExcThread(payload, started 139732616099584)>, <ExcThread(data, started 139732624492288)>, <ExcThread(job_monitor, started 139731794917120)>, <ExcThread(validate, started 139732632884992)>, <ExcThread(copytool_in, started 139731786524416)>, <ExcThread(failed_post, started 139731778131712)>, <ExcThread(copytool_out, started 139732398896896)>, <ExcThread(queue_monitoring, started 139732356933376)>, <ExcThread(validate_post, started 139732348540672)>, <ExcThread(create_data_payload, started 139732390504192)>, <ExcThread(execute_payloads, started 139731761346304)>]
2019-07-30 12:50:55,464 | DEBUG    | copytool_in         | pilot.control.data               | copytool_in               | [data] copytool_in thread has finished
2019-07-30 12:50:55,489 | INFO     | execute_payloads    | pilot.control.payload            | execute_payloads          | [payload] execute_payloads thread has finished
2019-07-30 12:50:55,561 | DEBUG    | payload             | pilot.control.payload            | control                   | payload control ending since graceful_stop has been set
2019-07-30 12:50:55,562 | DEBUG    | create_data_payload | pilot.control.job                | create_data_payload       | [job] create_data_payload thread has finished
2019-07-30 12:50:55,562 | DEBUG    | payload             | pilot.control.payload            | control                   | [payload] control thread has finished
2019-07-30 12:50:55,591 | DEBUG    | validate            | pilot.control.job                | validate                  | [job] validate thread has finished
2019-07-30 12:50:55,600 | DEBUG    | data                | pilot.control.data               | control                   | data control ending since graceful_stop has been set
2019-07-30 12:50:55,601 | DEBUG    | data                | pilot.control.data               | control                   | [data] control thread has finished
2019-07-30 12:50:55,608 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | thread count now at 6 threads
2019-07-30 12:50:55,608 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | enumerate: [<_MainThread(MainThread, started 139732855428864)>, <ExcThread(job_monitor, started 139731794917120)>, <ExcThread(failed_post, started 139731778131712)>, <ExcThread(copytool_out, started 139732398896896)>, <ExcThread(queue_monitoring, started 139732356933376)>, <ExcThread(validate_post, started 139732348540672)>]
2019-07-30 12:50:55,768 | INFO     | validate_post       | pilot.control.payload            | validate_post             | [payload] validate_post thread has finished
2019-07-30 12:50:55,771 | INFO     | failed_post         | pilot.control.payload            | failed_post               | [payload] failed_post thread has finished
2019-07-30 12:50:55,810 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | thread count now at 4 threads
2019-07-30 12:50:55,810 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | enumerate: [<_MainThread(MainThread, started 139732855428864)>, <ExcThread(job_monitor, started 139731794917120)>, <ExcThread(copytool_out, started 139732398896896)>, <ExcThread(queue_monitoring, started 139732356933376)>]
2019-07-30 12:50:56,258 | DEBUG    | copytool_out        | pilot.control.data               | copytool_out              | aborting
2019-07-30 12:50:56,258 | DEBUG    | copytool_out        | pilot.control.data               | copytool_out              | [data] copytool_out thread has finished
2019-07-30 12:50:56,313 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | thread count now at 3 threads
2019-07-30 12:50:56,313 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | enumerate: [<_MainThread(MainThread, started 139732855428864)>, <ExcThread(job_monitor, started 139731794917120)>, <ExcThread(queue_monitoring, started 139732356933376)>]
2019-07-30 12:50:58,233 | DEBUG    | queue_monitoring    | pilot.control.data               | queue_monitoring          | [data] queue_monitor thread has finished
2019-07-30 12:50:58,325 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | thread count now at 2 threads
2019-07-30 12:50:58,325 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | enumerate: [<_MainThread(MainThread, started 139732855428864)>, <ExcThread(job_monitor, started 139731794917120)>]
2019-07-30 12:51:05,625 | WARNING  | job_monitor         | pilot.control.job                | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 61 s)
2019-07-30 12:51:05,625 | DEBUG    | job_monitor         | pilot.control.job                | job_monitor               | [job] job monitor thread has finished
2019-07-30 12:51:05,670 | INFO     | MainThread          | pilot.workflow.generic           | run                       | end of generic workflow (traces error code: 0)
2019-07-30 12:51:05,671 | INFO     | MainThread          | root                             | wrap_up                   | traces error code: 0
2019-07-30 12:51:05,671 | INFO     | MainThread          | root                             | wrap_up                   | pilot has finished
***************diag file************
runtimeenvironments=APPS/HEP/ATLAS-SITE;
Processors=1
WallTime=9486.24s
KernelTime=426.31s
UserTime=54656.66s
CPUUsage=580%
MaxResidentMemory=2046528kB
AverageResidentMemory=0kB
AverageTotalMemory=0kB
AverageUnsharedMemory=0kB
AverageUnsharedStack=0kB
AverageSharedMemory=0kB
PageSize=4096B
MajorPageFaults=19348
MinorPageFaults=14363480
Swaps=0
ForcedSwitches=405963
WaitSwitches=8486564
Inputs=6915520
Outputs=604208
SocketReceived=0
SocketSent=0
Signals=0

nodename=wHewitt@asrock
exitcode=0
******************************WorkDir***********************
total 249424
drwxrwx--x  7 boinc boinc      4096 Jul 30 06:51 .
drwxrwxrwx 50 boinc boinc      4096 Jul 29 21:45 ..
-rw-------  1 boinc boinc   7406015 Jul 30 04:16 agis_ddmendpoints.json
-rw-------  1 boinc boinc   4564777 Jul 30 04:16 agis_schedconf.cvmfs.json
drwx------  2 boinc boinc      4096 Jul 30 04:13 .alrb
drwxr-xr-x  3 boinc boinc      4096 Jul 30 04:12 APPS
drwxr-xr-x  2 boinc boinc      4096 Jul 30 04:16 .arc
-rw-------  1 boinc boinc       550 Jul 30 04:14 .asetup
-rw-------  1 boinc boinc       829 Jul 30 04:17 .asetup.save
-rw-r--r--  1 boinc boinc         0 Jul 30 04:11 boinc_lockfile
-rw-r--r--  1 boinc boinc      8192 Jul 30 06:50 boinc_mmap_file
-rw-r--r--  1 boinc boinc       537 Jul 30 06:37 boinc_task_state.xml
-rw-------  1 boinc boinc       495 Jul 30 06:51 Cg3MDmgrXCvnShfckohDCDFpABFKDmABFKDm4GGPDmABFKDmuQ1tEn.diag
-rw-r--r--  1 boinc boinc 240863280 Jul 30 04:12 EVNT.18605745._000059.pool.root.1
-rw-------  1 boinc boinc     77460 Jul 30 06:50 heartbeat.json
-rw-r--r--  1 boinc boinc      5858 Jul 30 04:11 init_data.xml
-rw-r--r--  1 boinc boinc    258982 Jul 30 04:12 input.tar.gz
-rw-r--r--  1 boinc boinc       112 Jul 30 04:11 job.xml
-rw-------  1 boinc boinc    602890 Jul 30 06:51 log.18722183._002943.job.log.1
-rw-------  1 boinc boinc   1195102 Jul 30 06:50 log.18722183._002943.job.log.tgz.1
-rw-------  1 boinc boinc       391 Jul 30 06:51 output.list
-rw-------  1 boinc boinc      2919 Jul 29 21:20 pandaJobData.out
drwx------  3 boinc boinc      4096 Jul 25 08:38 pilot2
-rw-r--r--  1 boinc boinc    249689 Jul 28 01:23 pilot2.tar.gz
-rw-------  1 boinc boinc      8278 Jul 30 06:51 pilotlog.txt
-rw-r--r--  1 boinc boinc      4468 Jul 29 21:19 queuedata.json
-rw-r--r--  1 boinc boinc       815 Jul 30 04:12 RTE.tar.gz
-rwxr-xr-x  1 boinc boinc      8512 Jul 30 04:11 run_atlas
-rwx------  1 boinc boinc     15232 Jul 29 21:20 runpilot2-wrapper.sh
-rw-r--r--  1 boinc boinc       692 Jul 30 06:51 runtime_log
-rw-r--r--  1 boinc boinc      7138 Jul 30 06:51 runtime_log.err
drwxrwx--x  2 boinc boinc      4096 Jul 30 06:51 shared
-rw-r--r--  1 boinc boinc      8743 Jul 30 04:12 start_atlas.sh
-rw-r--r--  1 boinc boinc     10096 Jul 30 06:51 stderr.txt
-rw-r--r--  1 boinc boinc       107 Jul 30 04:11 wrapper_26015_x86_64-pc-linux-gnu
-rw-r--r--  1 boinc boinc        27 Jul 30 06:50 wrapper_checkpoint.txt
running start_atlas return value is 0
Parent exit 0
child process exit 0
06:51:06 (31043): run_atlas exited; CPU time 54656.848000
06:51:06 (31043): called boinc_finish(0)

</stderr_txt>
]]>

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