Stderr output

<core_client_version>7.6.31</core_client_version>
<![CDATA[
<stderr_txt>
14:51:02 (31972): wrapper (7.7.26015): starting
14:51:02 (31972): wrapper: running run_atlas (--nthreads 12)
singularity image is /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img
sys.argv = ['run_atlas', '--nthreads', '12']
THREADS=12
Checking for CVMFS
CVMFS is installed
OS:cat: /etc/redhat-release: No such file or directory

This is not SLC6, need to run with Singularity....
Checking Singularity...
Singularity is installed
copy /var/lib/boinc2/slots/2/shared/RTE.tar.gz
copy /var/lib/boinc2/slots/2/shared/ATLAS.root_0
copy /var/lib/boinc2/slots/2/shared/input.tar.gz
copy /var/lib/boinc2/slots/2/shared/start_atlas.sh
export ATHENA_PROC_NUMBER=12;start atlas job with 
Testing the function of Singularity...
check singularity with cmd:singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img hostname
Singularity Works...
cmd = singularity exec --pwd /var/lib/boinc2/slots/2 -B /cvmfs,/var /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img sh start_atlas.sh > runtime_log 2> runtime_log.err
running cmd return value is 0
Moving ./HITS.18722495._005879.pool.root.1 to shared/HITS.pool.root.1
*****************The last 100 lines of the pilot log******************
2019-08-06 23:47:58,598 | DEBUG    | retrieve            | pilot.control.job                | retrieve                  | getjob_requests=1
2019-08-06 23:48:08,645 | DEBUG    | retrieve            | pilot.control.job                | proceed_with_getjob       | proceed_with_getjob called with getjob_requests=1
2019-08-06 23:48:08,645 | DEBUG    | retrieve            | pilot.util.monitoring            | check_local_space         | checking local space on /var/lib/boinc2/slots/2
2019-08-06 23:48:08,663 | INFO     | retrieve            | pilot.util.monitoring            | check_local_space         | sufficient remaining disk space (246997319680 B)
2019-08-06 23:48:08,664 | WARNING  | retrieve            | pilot.control.job                | proceed_with_getjob       | since timefloor is set to 0, pilot was only allowed to run one job
2019-08-06 23:48:08,664 | DEBUG    | retrieve            | pilot.control.job                | retrieve                  | [job] retrieve thread has finished
2019-08-06 23:48:08,738 | DEBUG    | payload             | pilot.control.payload            | control                   | payload control ending since graceful_stop has been set
2019-08-06 23:48:08,739 | DEBUG    | payload             | pilot.control.payload            | control                   | [payload] control thread has finished
2019-08-06 23:48:08,833 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | thread count now at 15 threads
2019-08-06 23:48:08,833 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | enumerate: [<_MainThread(MainThread, started 140573484136192)>, <ExcThread(job, started 140573269985024)>, <ExcThread(execute_payloads, started 140572257937152)>, <ExcThread(job_monitor, started 140572870309632)>, <ExcThread(copytool_out, started 140573219628800)>, <ExcThread(copytool_in, started 140572845131520)>, <ExcThread(queue_monitoring, started 140572861916928)>, <ExcThread(monitor, started 140572836738816)>, <ExcThread(create_data_payload, started 140573244806912)>, <ExcThread(failed_post, started 140572266329856)>, <ExcThread(data, started 140573253199616)>, <ExcThread(validate_post, started 140572819953408)>, <ExcThread(validate, started 140573261592320)>, <ExcThread(validate_pre, started 140572828346112)>, <ExcThread(queue_monitor, started 140572853524224)>]
2019-08-06 23:48:08,838 | DEBUG    | job                 | pilot.control.job                | control                   | job control ending since graceful_stop has been set
2019-08-06 23:48:08,838 | DEBUG    | job                 | pilot.control.job                | control                   | [job] control thread has finished
2019-08-06 23:48:09,037 | DEBUG    | data                | pilot.control.data               | control                   | data control ending since graceful_stop has been set
2019-08-06 23:48:09,037 | DEBUG    | data                | pilot.control.data               | control                   | [data] control thread has finished
2019-08-06 23:48:09,135 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | thread count now at 13 threads
2019-08-06 23:48:09,135 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | enumerate: [<_MainThread(MainThread, started 140573484136192)>, <ExcThread(execute_payloads, started 140572257937152)>, <ExcThread(job_monitor, started 140572870309632)>, <ExcThread(copytool_out, started 140573219628800)>, <ExcThread(copytool_in, started 140572845131520)>, <ExcThread(queue_monitoring, started 140572861916928)>, <ExcThread(monitor, started 140572836738816)>, <ExcThread(create_data_payload, started 140573244806912)>, <ExcThread(failed_post, started 140572266329856)>, <ExcThread(validate_post, started 140572819953408)>, <ExcThread(validate, started 140573261592320)>, <ExcThread(validate_pre, started 140572828346112)>, <ExcThread(queue_monitor, started 140572853524224)>]
2019-08-06 23:48:09,600 | DEBUG    | create_data_payload | pilot.control.job                | create_data_payload       | [job] create_data_payload thread has finished
2019-08-06 23:48:09,600 | INFO     | validate_pre        | pilot.control.payload            | validate_pre              | [payload] validate_pre thread has finished
2019-08-06 23:48:09,601 | DEBUG    | validate            | pilot.control.job                | validate                  | [job] validate thread has finished
2019-08-06 23:48:09,601 | WARNING  | queue_monitoring    | pilot.util.common                | should_abort              | data:queue_monitoring:received graceful stop - abort after this iteration
2019-08-06 23:48:09,601 | DEBUG    | copytool_in         | pilot.control.data               | copytool_in               | [data] copytool_in thread has finished
2019-08-06 23:48:09,602 | INFO     | execute_payloads    | pilot.control.payload            | execute_payloads          | [payload] execute_payloads thread has finished
2019-08-06 23:48:09,602 | WARNING  | copytool_out        | pilot.util.common                | should_abort              | data:copytool_out:received graceful stop - abort after this iteration
2019-08-06 23:48:09,602 | INFO     | failed_post         | pilot.control.payload            | failed_post               | [payload] failed_post thread has finished
2019-08-06 23:48:09,603 | DEBUG    | copytool_out        | pilot.control.data               | copytool_out              | will abort 
2019-08-06 23:48:09,621 | INFO     | monitor             | pilot.control.monitor            | control                   | [monitor] control thread has ended
2019-08-06 23:48:09,637 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | thread count now at 6 threads
2019-08-06 23:48:09,638 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | enumerate: [<_MainThread(MainThread, started 140573484136192)>, <ExcThread(job_monitor, started 140572870309632)>, <ExcThread(copytool_out, started 140573219628800)>, <ExcThread(queue_monitoring, started 140572861916928)>, <ExcThread(validate_post, started 140572819953408)>, <ExcThread(queue_monitor, started 140572853524224)>]
2019-08-06 23:48:09,706 | INFO     | validate_post       | pilot.control.payload            | validate_post             | [payload] validate_post thread has finished
2019-08-06 23:48:09,738 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | thread count now at 5 threads
2019-08-06 23:48:09,739 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | enumerate: [<_MainThread(MainThread, started 140573484136192)>, <ExcThread(job_monitor, started 140572870309632)>, <ExcThread(copytool_out, started 140573219628800)>, <ExcThread(queue_monitoring, started 140572861916928)>, <ExcThread(queue_monitor, started 140572853524224)>]
2019-08-06 23:48:10,600 | WARNING  | queue_monitor       | pilot.util.common                | should_abort              | job:queue_monitor:received graceful stop - abort after this iteration
2019-08-06 23:48:10,601 | DEBUG    | queue_monitor       | pilot.control.job                | queue_monitor             | [job] queue monitor thread has finished
2019-08-06 23:48:10,603 | DEBUG    | copytool_out        | pilot.control.data               | copytool_out              | aborting
2019-08-06 23:48:10,603 | DEBUG    | copytool_out        | pilot.control.data               | copytool_out              | [data] copytool_out thread has finished
2019-08-06 23:48:10,645 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | thread count now at 3 threads
2019-08-06 23:48:10,645 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | enumerate: [<_MainThread(MainThread, started 140573484136192)>, <ExcThread(job_monitor, started 140572870309632)>, <ExcThread(queue_monitoring, started 140572861916928)>]
2019-08-06 23:48:12,603 | DEBUG    | queue_monitoring    | pilot.control.data               | queue_monitoring          | [data] queue_monitor thread has finished
2019-08-06 23:48:12,658 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | thread count now at 2 threads
2019-08-06 23:48:12,658 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | enumerate: [<_MainThread(MainThread, started 140573484136192)>, <ExcThread(job_monitor, started 140572870309632)>]
2019-08-06 23:48:27,461 | WARNING  | job_monitor         | pilot.control.job                | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 61 s)
2019-08-06 23:48:27,461 | DEBUG    | job_monitor         | pilot.control.job                | job_monitor               | [job] job monitor thread has finished
2019-08-06 23:48:27,554 | INFO     | MainThread          | pilot.workflow.generic           | run                       | end of generic workflow (traces error code: 0)
2019-08-06 23:48:27,555 | INFO     | MainThread          | root                             | wrap_up                   | traces error code: 0
2019-08-06 23:48:27,555 | INFO     | MainThread          | root                             | wrap_up                   | pilot has finished
***************diag file************
runtimeenvironments=APPS/HEP/ATLAS-SITE;
Processors=1
WallTime=10539.91s
KernelTime=590.32s
UserTime=84212.50s
CPUUsage=804%
MaxResidentMemory=1995580kB
AverageResidentMemory=0kB
AverageTotalMemory=0kB
AverageUnsharedMemory=0kB
AverageUnsharedStack=0kB
AverageSharedMemory=0kB
PageSize=4096B
MajorPageFaults=24886
MinorPageFaults=14448305
Swaps=0
ForcedSwitches=628345
WaitSwitches=9464106
Inputs=8403606
Outputs=997832
SocketReceived=0
SocketSent=0
Signals=0

nodename=wHewitt@d8
exitcode=0
******************************WorkDir***********************
total 248060
drwxrwxrwx  7 root root      4096 Aug  6 17:48 .
drwxrwxrwx 52 root root      4096 Aug  6 09:07 ..
-rw-------  1 root root       492 Aug  6 17:48 63OLDmzkJFvnShfckohDCDFpABFKDmABFKDmUEkVDmABFKDmaKqrAo.diag
-rw-------  1 root root   7407766 Aug  6 14:57 agis_ddmendpoints.json
-rw-------  1 root root   4566326 Aug  6 14:57 agis_schedconf.cvmfs.json
drwx------  2 root root      4096 Aug  6 14:53 .alrb
drwxr-xr-x  3 root root      4096 Aug  6 14:52 APPS
drwxr-xr-x  2 root root      4096 Aug  6 14:56 .arc
-rw-------  1 root root       543 Aug  6 14:54 .asetup
-rw-------  1 root root       829 Aug  6 14:59 .asetup.save
-rw-r--r--  1 root root         0 Aug  6 14:51 boinc_lockfile
-rw-r--r--  1 root root      8192 Aug  6 17:48 boinc_mmap_file
-rw-r--r--  1 root root       537 Aug  6 17:17 boinc_task_state.xml
-rw-r--r--  1 root root 239000803 Aug  6 14:52 EVNT.18605790._000115.pool.root.1
-rw-------  1 root root     88331 Aug  6 17:47 heartbeat.json
-rw-r--r--  1 root root      8494 Aug  6 14:53 init_data.xml
-rw-r--r--  1 root root    261796 Aug  6 14:52 input.tar.gz
-rw-r--r--  1 root root       112 Aug  6 14:51 job.xml
-rw-------  1 root root    651082 Aug  6 17:48 log.18722495._005879.job.log.1
-rw-------  1 root root   1591807 Aug  6 17:47 log.18722495._005879.job.log.tgz.1
-rw-------  1 root root       391 Aug  6 17:48 output.list
-rw-------  1 4871 1028      2948 Aug  6 12:52 pandaJobData.out
drwxr-xr-x  3  320  320      4096 Jul 31 11:00 pilot2
-rw-r--r--  1 root root    252463 Aug  6 12:52 pilot2.tar.gz
-rw-------  1 root root      9442 Aug  6 17:48 pilotlog.txt
-rw-r--r--  1 root root      4468 Aug  6 12:52 queuedata.json
-rw-r--r--  1 root root       815 Aug  6 14:52 RTE.tar.gz
-rwxr-xr-x  1 root root      8512 Aug  6 14:51 run_atlas
-rwx------  1 4871 1028     15232 Aug  6 12:52 runpilot2-wrapper.sh
-rw-r--r--  1 root root       692 Aug  6 17:48 runtime_log
-rw-r--r--  1 root root      6931 Aug  6 17:48 runtime_log.err
drwxrwx--x  2 root root      4096 Aug  6 17:48 shared
-rw-r--r--  1 root root      8744 Aug  6 14:52 start_atlas.sh
-rw-r--r--  1 root root     11226 Aug  6 17:48 stderr.txt
-rw-r--r--  1 root root       107 Aug  6 14:51 wrapper_26015_x86_64-pc-linux-gnu
-rw-r--r--  1 root root        28 Aug  6 17:48 wrapper_checkpoint.txt
running start_atlas return value is 0
Parent exit 0
child process exit 0
17:48:37 (31972): run_atlas exited; CPU time 84212.708000
17:48:37 (31972): called boinc_finish(0)

</stderr_txt>
]]>

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