Stderr output

<core_client_version>7.6.31</core_client_version>
<![CDATA[
<stderr_txt>
18:29:17 (17500): wrapper (7.7.26015): starting
18:29:17 (17500): wrapper: running run_atlas (--nthreads 8)
singularity image is /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img
sys.argv = ['run_atlas', '--nthreads', '8']
THREADS=8
Checking for CVMFS
CVMFS is installed
OS:cat: /etc/redhat-release: No such file or directory

This is not SLC6, need to run with Singularity....
Checking Singularity...
Singularity is installed
copy /var/lib/boinc2/slots/36/shared/RTE.tar.gz
copy /var/lib/boinc2/slots/36/shared/ATLAS.root_0
copy /var/lib/boinc2/slots/36/shared/input.tar.gz
copy /var/lib/boinc2/slots/36/shared/start_atlas.sh
export ATHENA_PROC_NUMBER=8;start atlas job with 
Testing the function of Singularity...
check singularity with cmd:singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img hostname
Singularity Works...
cmd = singularity exec --pwd /var/lib/boinc2/slots/36 -B /cvmfs,/var /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img sh start_atlas.sh > runtime_log 2> runtime_log.err
running cmd return value is 0
Moving ./HITS.18722552._005695.pool.root.1 to shared/HITS.pool.root.1
*****************The last 100 lines of the pilot log******************
2019-08-07 05:15:59,329 | DEBUG    | retrieve            | pilot.control.job                | retrieve                  | getjob_requests=1
2019-08-07 05:16:09,378 | DEBUG    | retrieve            | pilot.control.job                | proceed_with_getjob       | proceed_with_getjob called with getjob_requests=1
2019-08-07 05:16:09,378 | DEBUG    | retrieve            | pilot.util.monitoring            | check_local_space         | checking local space on /var/lib/boinc2/slots/36
2019-08-07 05:16:09,399 | INFO     | retrieve            | pilot.util.monitoring            | check_local_space         | sufficient remaining disk space (206980513792 B)
2019-08-07 05:16:09,399 | WARNING  | retrieve            | pilot.control.job                | proceed_with_getjob       | since timefloor is set to 0, pilot was only allowed to run one job
2019-08-07 05:16:09,399 | DEBUG    | retrieve            | pilot.control.job                | retrieve                  | [job] retrieve thread has finished
2019-08-07 05:16:09,418 | INFO     | failed_post         | pilot.control.payload            | failed_post               | [payload] failed_post thread has finished
2019-08-07 05:16:09,438 | WARNING  | queue_monitor       | pilot.util.common                | should_abort              | job:queue_monitor:received graceful stop - abort after this iteration
2019-08-07 05:16:09,439 | DEBUG    | queue_monitor       | pilot.control.job                | queue_monitor             | [job] queue monitor thread has finished
2019-08-07 05:16:09,573 | DEBUG    | job                 | pilot.control.job                | control                   | job control ending since graceful_stop has been set
2019-08-07 05:16:09,573 | DEBUG    | job                 | pilot.control.job                | control                   | [job] control thread has finished
2019-08-07 05:16:09,637 | DEBUG    | copytool_in         | pilot.control.data               | copytool_in               | [data] copytool_in thread has finished
2019-08-07 05:16:09,818 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | thread count now at 12 threads
2019-08-07 05:16:09,818 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | enumerate: [<_MainThread(MainThread, started 139818924373760)>, <ExcThread(payload, started 139818608609024)>, <ExcThread(copytool_out, started 139818617001728)>, <ExcThread(execute_payloads, started 139817627154176)>, <ExcThread(validate_post, started 139818197563136)>, <ExcThread(validate, started 139818625394432)>, <ExcThread(monitor, started 139818222741248)>, <ExcThread(data, started 139818633787136)>, <ExcThread(validate_pre, started 139818214348544)>, <ExcThread(queue_monitoring, started 139818591823616)>, <ExcThread(job_monitor, started 139818205955840)>, <ExcThread(create_data_payload, started 139818600216320)>]
2019-08-07 05:16:09,826 | DEBUG    | data                | pilot.control.data               | control                   | data control ending since graceful_stop has been set
2019-08-07 05:16:09,826 | DEBUG    | data                | pilot.control.data               | control                   | [data] control thread has finished
2019-08-07 05:16:09,860 | DEBUG    | payload             | pilot.control.payload            | control                   | payload control ending since graceful_stop has been set
2019-08-07 05:16:09,861 | DEBUG    | payload             | pilot.control.payload            | control                   | [payload] control thread has finished
2019-08-07 05:16:09,941 | DEBUG    | create_data_payload | pilot.control.job                | create_data_payload       | [job] create_data_payload thread has finished
2019-08-07 05:16:10,020 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | thread count now at 9 threads
2019-08-07 05:16:10,020 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | enumerate: [<_MainThread(MainThread, started 139818924373760)>, <ExcThread(copytool_out, started 139818617001728)>, <ExcThread(execute_payloads, started 139817627154176)>, <ExcThread(validate_post, started 139818197563136)>, <ExcThread(validate, started 139818625394432)>, <ExcThread(monitor, started 139818222741248)>, <ExcThread(validate_pre, started 139818214348544)>, <ExcThread(queue_monitoring, started 139818591823616)>, <ExcThread(job_monitor, started 139818205955840)>]
2019-08-07 05:16:10,069 | INFO     | validate_pre        | pilot.control.payload            | validate_pre              | [payload] validate_pre thread has finished
2019-08-07 05:16:10,072 | DEBUG    | validate            | pilot.control.job                | validate                  | [job] validate thread has finished
2019-08-07 05:16:10,100 | INFO     | execute_payloads    | pilot.control.payload            | execute_payloads          | [payload] execute_payloads thread has finished
2019-08-07 05:16:10,182 | INFO     | monitor             | pilot.control.monitor            | control                   | [monitor] control thread has ended
2019-08-07 05:16:10,184 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | thread count now at 5 threads
2019-08-07 05:16:10,185 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | enumerate: [<_MainThread(MainThread, started 139818924373760)>, <ExcThread(copytool_out, started 139818617001728)>, <ExcThread(validate_post, started 139818197563136)>, <ExcThread(queue_monitoring, started 139818591823616)>, <ExcThread(job_monitor, started 139818205955840)>]
2019-08-07 05:16:10,262 | WARNING  | copytool_out        | pilot.util.common                | should_abort              | data:copytool_out:received graceful stop - abort after this iteration
2019-08-07 05:16:10,262 | DEBUG    | copytool_out        | pilot.control.data               | copytool_out              | will abort 
2019-08-07 05:16:10,333 | INFO     | validate_post       | pilot.control.payload            | validate_post             | [payload] validate_post thread has finished
2019-08-07 05:16:10,386 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | thread count now at 4 threads
2019-08-07 05:16:10,386 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | enumerate: [<_MainThread(MainThread, started 139818924373760)>, <ExcThread(copytool_out, started 139818617001728)>, <ExcThread(queue_monitoring, started 139818591823616)>, <ExcThread(job_monitor, started 139818205955840)>]
2019-08-07 05:16:11,262 | DEBUG    | copytool_out        | pilot.control.data               | copytool_out              | aborting
2019-08-07 05:16:11,263 | DEBUG    | copytool_out        | pilot.control.data               | copytool_out              | [data] copytool_out thread has finished
2019-08-07 05:16:11,292 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | thread count now at 3 threads
2019-08-07 05:16:11,292 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | enumerate: [<_MainThread(MainThread, started 139818924373760)>, <ExcThread(queue_monitoring, started 139818591823616)>, <ExcThread(job_monitor, started 139818205955840)>]
2019-08-07 05:16:12,245 | WARNING  | queue_monitoring    | pilot.util.common                | should_abort              | data:queue_monitoring:received graceful stop - abort after this iteration
2019-08-07 05:16:15,246 | DEBUG    | queue_monitoring    | pilot.control.data               | queue_monitoring          | [data] queue_monitor thread has finished
2019-08-07 05:16:15,320 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | thread count now at 2 threads
2019-08-07 05:16:15,321 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | enumerate: [<_MainThread(MainThread, started 139818924373760)>, <ExcThread(job_monitor, started 139818205955840)>]
2019-08-07 05:16:21,564 | WARNING  | job_monitor         | pilot.control.job                | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 61 s)
2019-08-07 05:16:21,564 | DEBUG    | job_monitor         | pilot.control.job                | job_monitor               | [job] job monitor thread has finished
2019-08-07 05:16:21,565 | INFO     | MainThread          | pilot.workflow.generic           | run                       | end of generic workflow (traces error code: 0)
2019-08-07 05:16:21,566 | INFO     | MainThread          | root                             | wrap_up                   | traces error code: 0
2019-08-07 05:16:21,566 | INFO     | MainThread          | root                             | wrap_up                   | pilot has finished
***************diag file************
runtimeenvironments=APPS/HEP/ATLAS-SITE;
Processors=1
WallTime=17210.61s
KernelTime=1239.89s
UserTime=116126.33s
CPUUsage=681%
MaxResidentMemory=2035464kB
AverageResidentMemory=0kB
AverageTotalMemory=0kB
AverageUnsharedMemory=0kB
AverageUnsharedStack=0kB
AverageSharedMemory=0kB
PageSize=4096B
MajorPageFaults=25752
MinorPageFaults=24116168
Swaps=0
ForcedSwitches=1363724
WaitSwitches=12623669
Inputs=8800496
Outputs=1042848
SocketReceived=0
SocketSent=0
Signals=0

nodename=wHewitt@d8
exitcode=0
******************************WorkDir***********************
total 247572
drwxrwx--x  7 root root      4096 Aug  6 23:16 .
drwxrwxrwx 52 root root      4096 Aug  6 09:07 ..
-rw-------  1 root root       497 Aug  6 23:16 7IdNDmhyOFvnShfckohDCDFpABFKDmABFKDm8QwVDmABFKDmJpHhom.diag
-rw-------  1 root root   7407766 Aug  6 18:30 agis_ddmendpoints.json
-rw-------  1 root root   4566453 Aug  6 18:30 agis_schedconf.cvmfs.json
drwx------  2 root root      4096 Aug  6 18:29 .alrb
drwxr-xr-x  3 root root      4096 Aug  6 18:29 APPS
drwxr-xr-x  2 root root      4096 Aug  6 18:30 .arc
-rw-------  1 root root       544 Aug  6 18:29 .asetup
-rw-------  1 root root       829 Aug  6 18:31 .asetup.save
-rw-r--r--  1 root root         0 Aug  6 18:29 boinc_lockfile
-rw-r--r--  1 root root      8192 Aug  6 23:16 boinc_mmap_file
-rw-r--r--  1 root root       538 Aug  6 22:57 boinc_task_state.xml
-rw-r--r--  1 root root 238603856 Aug  6 18:29 EVNT.18605796._000111.pool.root.1
-rw-------  1 root root     84318 Aug  6 23:15 heartbeat.json
-rw-r--r--  1 root root      8518 Aug  6 22:21 init_data.xml
-rw-r--r--  1 root root    261801 Aug  6 18:29 input.tar.gz
-rw-r--r--  1 root root       112 Aug  6 18:29 job.xml
-rw-------  1 root root    937407 Aug  6 23:16 log.18722552._005695.job.log.1
-rw-------  1 root root   1211255 Aug  6 23:15 log.18722552._005695.job.log.tgz.1
-rw-------  1 root root       391 Aug  6 23:16 output.list
-rw-------  1 4871 1028      2948 Aug  6 18:27 pandaJobData.out
drwxr-xr-x  3  320  320      4096 Jul 31 11:00 pilot2
-rw-r--r--  1 root root    252463 Aug  6 18:27 pilot2.tar.gz
-rw-------  1 root root      8971 Aug  6 23:16 pilotlog.txt
-rw-r--r--  1 root root      4468 Aug  6 18:27 queuedata.json
-rw-r--r--  1 root root       815 Aug  6 18:29 RTE.tar.gz
-rwxr-xr-x  1 root root      8512 Aug  6 18:29 run_atlas
-rwx------  1 4871 1028     15232 Aug  6 18:27 runpilot2-wrapper.sh
-rw-r--r--  1 root root       692 Aug  6 23:16 runtime_log
-rw-r--r--  1 root root      6956 Aug  6 23:16 runtime_log.err
drwxrwx--x  2 root root      4096 Aug  6 23:16 shared
-rw-r--r--  1 root root      8743 Aug  6 18:29 start_atlas.sh
-rw-r--r--  1 root root     10761 Aug  6 23:16 stderr.txt
-rw-r--r--  1 root root       107 Aug  6 18:29 wrapper_26015_x86_64-pc-linux-gnu
-rw-r--r--  1 root root        29 Aug  6 23:16 wrapper_checkpoint.txt
running start_atlas return value is 0
Parent exit 0
child process exit 0
23:16:23 (17500): run_atlas exited; CPU time 116126.576000
23:16:23 (17500): called boinc_finish(0)

</stderr_txt>
]]>

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