Name | go2LDmmjyFvnShfckohDCDFpABFKDmABFKDmaGIXDmABFKDmLzuXxm_1 |
Workunit | 1915012 |
Created | 8 Aug 2019, 16:32:29 UTC |
Sent | 8 Aug 2019, 17:35:33 UTC |
Report deadline | 15 Aug 2019, 17:35:33 UTC |
Received | 8 Aug 2019, 22:14:04 UTC |
Server state | Over |
Outcome | Success |
Client state | Done |
Exit status | 0 (0x00000000) |
Computer ID | 3911 |
Run time | 1 hours 32 min 10 sec |
CPU time | 5 hours 27 min 40 sec |
Validate state | Valid |
Credit | 163.34 |
Device peak FLOPS | 12.76 GFLOPS |
Application version | ATLAS Simulation v0.70 (native_mt) x86_64-pc-linux-gnu |
Peak working set size | 1.80 GB |
Peak swap size | 2.55 GB |
Peak disk usage | 835.49 MB |
<core_client_version>7.7.0</core_client_version> <![CDATA[ <stderr_txt> 21:41:34 (16525): wrapper (7.7.26015): starting 21:41:34 (16525): wrapper: running run_atlas (--nthreads 4) singularity image is /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sys.argv = ['run_atlas', '--nthreads', '4'] THREADS=4 Checking for CVMFS CVMFS is installed OS:CentOS Linux release 7.6.1810 (Core) This is not SLC6, need to run with Singularity.... Checking Singularity... Singularity is installed, version singularity version 3.2.1-1 Testing the function of Singularity... Checking singularity with cmd:singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 hostname Singularity Works... copy /home/grid/slots/0/shared/ATLAS.root_0 copy /home/grid/slots/0/shared/input.tar.gz copy /home/grid/slots/0/shared/RTE.tar.gz copy /home/grid/slots/0/shared/start_atlas.sh export ATHENA_PROC_NUMBER=4;start atlas job with grep: pandaJobData.out: No such file or directory cmd = singularity exec --pwd /home/grid/slots/0 -B /cvmfs,/home /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sh start_atlas.sh > runtime_log 2> runtime_log.err running cmd return value is 0 Moving ./HITS.18605019._038834.pool.root.1 to shared/HITS.pool.root.1 *****************The last 100 lines of the pilot log****************** 2019-08-08 21:12:59,232 | INFO | retrieve | pilot.util.auxiliary | make_job_report | 2019-08-08 21:12:59,233 | INFO | retrieve | pilot.util.auxiliary | make_job_report | job summary report 2019-08-08 21:12:59,233 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-08-08 21:12:59,233 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4437417732 2019-08-08 21:12:59,233 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18605019 2019-08-08 21:12:59,233 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none) 2019-08-08 21:12:59,233 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE 2019-08-08 21:12:59,233 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished 2019-08-08 21:12:59,233 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0 2019-08-08 21:12:59,233 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0 2019-08-08 21:12:59,233 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag: 2019-08-08 21:12:59,233 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0 2019-08-08 21:12:59,233 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK 2019-08-08 21:12:59,234 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 19756 s 2019-08-08 21:12:59,234 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 200 2019-08-08 21:12:59,234 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0 2019-08-08 21:12:59,234 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 23197 2019-08-08 21:12:59,234 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: 23197 2019-08-08 21:12:59,234 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 4 2019-08-08 21:12:59,234 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False 2019-08-08 21:12:59,234 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-08-08 21:12:59,234 | INFO | retrieve | pilot.util.auxiliary | make_job_report | 2019-08-08 21:12:59,234 | INFO | retrieve | pilot.control.job | has_job_completed | job 4437417732 has completed 2019-08-08 21:12:59,234 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called 2019-08-08 21:12:59,242 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /home/grid/slots/0/PanDA_Pilot-4437417732 2019-08-08 21:13:00,248 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [23197] 2019-08-08 21:13:00,248 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 23197 2019-08-08 21:13:00,248 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes 2019-08-08 21:13:01,254 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes 2019-08-08 21:13:01,254 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=23197 2019-08-08 21:13:01,314 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [23197] (in reverse order) 2019-08-08 21:13:01,361 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s) 2019-08-08 21:13:01,361 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs 2019-08-08 21:13:01,361 | INFO | retrieve | pilot.control.job | retrieve | ready for new job 2019-08-08 21:13:01,361 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging No handlers could be found for logger "pilot.util.mpi" 2019-08-08 21:13:01,872 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1 2019-08-08 21:13:11,923 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1 2019-08-08 21:13:11,923 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /home/grid/slots/0 2019-08-08 21:13:11,965 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (34830548992 B) 2019-08-08 21:13:11,966 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job 2019-08-08 21:13:11,966 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished 2019-08-08 21:13:11,982 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration 2019-08-08 21:13:12,127 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set 2019-08-08 21:13:12,128 | DEBUG | data | pilot.control.data | control | [data] control thread has finished 2019-08-08 21:13:12,322 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished 2019-08-08 21:13:12,325 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set 2019-08-08 21:13:12,326 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished 2019-08-08 21:13:12,326 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set 2019-08-08 21:13:12,326 | DEBUG | job | pilot.control.job | control | [job] control thread has finished 2019-08-08 21:13:12,329 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 12 threads 2019-08-08 21:13:12,330 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140458636695296)>, <ExcThread(validate, started 140458412029696)>, <ExcThread(queue_monitoring, started 140458164475648)>, <ExcThread(validate_pre, started 140457577281280)>, <ExcThread(copytool_in, started 140458147690240)>, <ExcThread(copytool_out, started 140458172868352)>, <ExcThread(queue_monitor, started 140457568888576)>, <ExcThread(monitor, started 140458130904832)>, <ExcThread(job_monitor, started 140458139297536)>, <ExcThread(failed_post, started 140457552103168)>, <ExcThread(create_data_payload, started 140458395244288)>, <ExcThread(execute_payloads, started 140457543710464)>] 2019-08-08 21:13:12,560 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished 2019-08-08 21:13:12,594 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended 2019-08-08 21:13:12,631 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 10 threads 2019-08-08 21:13:12,632 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140458636695296)>, <ExcThread(validate, started 140458412029696)>, <ExcThread(queue_monitoring, started 140458164475648)>, <ExcThread(validate_pre, started 140457577281280)>, <ExcThread(copytool_out, started 140458172868352)>, <ExcThread(queue_monitor, started 140457568888576)>, <ExcThread(job_monitor, started 140458139297536)>, <ExcThread(failed_post, started 140457552103168)>, <ExcThread(create_data_payload, started 140458395244288)>, <ExcThread(execute_payloads, started 140457543710464)>] 2019-08-08 21:13:12,664 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished 2019-08-08 21:13:12,733 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 9 threads 2019-08-08 21:13:12,733 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140458636695296)>, <ExcThread(validate, started 140458412029696)>, <ExcThread(queue_monitoring, started 140458164475648)>, <ExcThread(copytool_out, started 140458172868352)>, <ExcThread(queue_monitor, started 140457568888576)>, <ExcThread(job_monitor, started 140458139297536)>, <ExcThread(failed_post, started 140457552103168)>, <ExcThread(create_data_payload, started 140458395244288)>, <ExcThread(execute_payloads, started 140457543710464)>] 2019-08-08 21:13:12,982 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished 2019-08-08 21:13:13,035 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 8 threads 2019-08-08 21:13:13,035 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140458636695296)>, <ExcThread(validate, started 140458412029696)>, <ExcThread(queue_monitoring, started 140458164475648)>, <ExcThread(queue_monitor, started 140457568888576)>, <ExcThread(job_monitor, started 140458139297536)>, <ExcThread(failed_post, started 140457552103168)>, <ExcThread(create_data_payload, started 140458395244288)>, <ExcThread(execute_payloads, started 140457543710464)>] 2019-08-08 21:13:13,146 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished 2019-08-08 21:13:13,153 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished 2019-08-08 21:13:13,169 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished 2019-08-08 21:13:13,237 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 5 threads 2019-08-08 21:13:13,238 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140458636695296)>, <ExcThread(validate, started 140458412029696)>, <ExcThread(queue_monitoring, started 140458164475648)>, <ExcThread(queue_monitor, started 140457568888576)>, <ExcThread(job_monitor, started 140458139297536)>] 2019-08-08 21:13:13,291 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished 2019-08-08 21:13:13,338 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 4 threads 2019-08-08 21:13:13,339 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140458636695296)>, <ExcThread(queue_monitoring, started 140458164475648)>, <ExcThread(queue_monitor, started 140457568888576)>, <ExcThread(job_monitor, started 140458139297536)>] 2019-08-08 21:13:13,727 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration 2019-08-08 21:13:13,727 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished 2019-08-08 21:13:13,742 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration 2019-08-08 21:13:13,742 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 3 threads 2019-08-08 21:13:13,742 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140458636695296)>, <ExcThread(queue_monitoring, started 140458164475648)>, <ExcThread(job_monitor, started 140458139297536)>] 2019-08-08 21:13:16,743 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished 2019-08-08 21:13:16,764 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 2 threads 2019-08-08 21:13:16,764 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140458636695296)>, <ExcThread(job_monitor, started 140458139297536)>] 2019-08-08 21:13:40,582 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 62 s) 2019-08-08 21:13:40,583 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished 2019-08-08 21:13:40,625 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0) 2019-08-08 21:13:40,625 | INFO | MainThread | root | wrap_up | traces error code: 0 2019-08-08 21:13:40,626 | INFO | MainThread | root | wrap_up | pilot has finished 2019-08-08 21:13:40 UTC [wrapper] ==== pilot stdout END ==== 2019-08-08 21:13:40 UTC [wrapper] ==== wrapper stdout RESUME ==== 2019-08-08 21:13:40 UTC [wrapper] Pilot exit status: 0 2019-08-08 21:13:40 UTC [wrapper] STATUSCODE: 0 2019-08-08 21:13:40 UTC [wrapper] apfmon messages muted ---- find pandaID.out ---- total 44 -rw-------. 1 grid grid 11357 Jul 25 16:38 LICENSE drwx------. 14 grid grid 216 Aug 8 21:41 pilot -rwx------. 1 grid grid 20463 Jul 25 16:38 pilot.py -rw-------. 1 grid grid 8 Aug 7 13:02 PILOTVERSION -rw-------. 1 grid grid 2251 Jul 25 16:38 README.md -rw-------. 1 grid grid 221 Jul 25 16:38 TODO.md 2019-08-08 21:13:40 UTC [wrapper] Test setup, not cleaning 2019-08-08 21:13:40 UTC [wrapper] ==== wrapper stdout END ==== 2019-08-08 21:13:40 UTC [wrapper] ==== wrapper stderr END ==== ***************diag file************ runtimeenvironments=APPS/HEP/ATLAS-SITE; Processors=1 WallTime=5522.24s KernelTime=191.79s UserTime=19659.88s CPUUsage=359% MaxResidentMemory=1944364kB AverageResidentMemory=0kB AverageTotalMemory=0kB AverageUnsharedMemory=0kB AverageUnsharedStack=0kB AverageSharedMemory=0kB PageSize=4096B MajorPageFaults=260531 MinorPageFaults=12347856 Swaps=0 ForcedSwitches=2321725 WaitSwitches=4848585 Inputs=63478776 Outputs=492048 SocketReceived=0 SocketSent=0 Signals=0 nodename=David_Cameron@dcameron04.cern.ch exitcode=0 ******************************WorkDir*********************** total 379328 drwxrwx--x. 7 grid grid 4096 Aug 8 23:13 . drwxr-x--x. 3 grid grid 15 Aug 8 09:08 .. -rw-------. 1 grid grid 7409227 Aug 8 21:41 agis_ddmendpoints.json -rw-------. 1 grid grid 4533676 Aug 8 21:41 agis_schedconf.cvmfs.json drwx------. 2 grid grid 6 Aug 8 21:41 .alrb drwxr-xr-x. 3 grid grid 17 Aug 8 21:41 APPS drwxr-xr-x. 2 grid grid 6 Aug 8 21:41 .arc -rw-------. 1 grid grid 538 Aug 8 21:41 .asetup -rw-------. 1 grid grid 826 Aug 8 21:42 .asetup.save -rw-r--r--. 1 grid grid 0 Aug 8 21:41 boinc_lockfile -rw-r--r--. 1 grid grid 8192 Aug 8 23:13 boinc_mmap_file -rw-r--r--. 1 grid grid 536 Aug 8 23:07 boinc_task_state.xml -rw-r--r--. 1 grid grid 374566182 Aug 8 21:41 EVNT.17323843._000779.pool.root.1 -rw-------. 1 grid grid 516 Aug 8 23:13 go2LDmmjyFvnShfckohDCDFpABFKDmABFKDmaGIXDmABFKDmLzuXxm.diag -rw-------. 1 grid grid 55642 Aug 8 23:12 heartbeat.json -rw-r--r--. 1 grid grid 5853 Aug 8 21:41 init_data.xml -rw-r--r--. 1 grid grid 262339 Aug 8 21:41 input.tar.gz -rw-r--r--. 1 grid grid 112 Aug 8 21:41 job.xml -rw-------. 1 grid grid 375625 Aug 8 23:13 log.18605019._038834.job.log.1 -rw-------. 1 grid grid 810886 Aug 8 23:12 log.18605019._038834.job.log.tgz.1 -rw-------. 1 grid grid 391 Aug 8 23:13 output.list -rw-------. 1 grid grid 2887 Aug 8 16:38 pandaJobData.out drwx------. 3 grid grid 174 Aug 7 13:02 pilot2 -rw-r--r--. 1 grid grid 253018 Aug 8 16:25 pilot2.tar.gz -rw-------. 1 grid grid 10247 Aug 8 23:13 pilotlog.txt -rw-r--r--. 1 grid grid 4468 Aug 8 16:35 queuedata.json -rw-r--r--. 1 grid grid 815 Aug 8 21:41 RTE.tar.gz -rwxr-xr-x. 1 grid grid 8648 Aug 8 21:41 run_atlas -rwx------. 1 grid grid 15232 Aug 8 16:38 runpilot2-wrapper.sh -rw-r--r--. 1 grid grid 692 Aug 8 23:13 runtime_log -rw-r--r--. 1 grid grid 6807 Aug 8 23:13 runtime_log.err drwxrwx--x. 2 grid grid 131 Aug 8 23:13 shared -rw-r--r--. 1 grid grid 8688 Aug 8 21:41 start_atlas.sh -rw-r--r--. 1 grid grid 18244 Aug 8 23:13 stderr.txt -rw-r--r--. 1 grid grid 107 Aug 8 21:41 wrapper_26015_x86_64-pc-linux-gnu -rw-r--r--. 1 grid grid 27 Aug 8 23:13 wrapper_checkpoint.txt running start_atlas return value is 0 Parent exit 0 child process exit 0 23:13:41 (16525): run_atlas exited; CPU time 19660.327960 23:13:41 (16525): called boinc_finish(0) </stderr_txt> ]]>
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