Stderr output

<core_client_version>7.15.0</core_client_version>
<![CDATA[
<stderr_txt>
20:06:07 (22898): wrapper (7.7.26015): starting
20:06:07 (22898): wrapper: running run_atlas (--nthreads 2)
singularity image is /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6
sys.argv = ['run_atlas', '--nthreads', '2']
THREADS=2
Checking for CVMFS
CVMFS is installed
OS:cat: /etc/redhat-release: Datei oder Verzeichnis nicht gefunden

This is not SLC6, need to run with Singularity....
Checking Singularity...
Singularity is not installed, using version from CVMFS
Testing the function of Singularity...
Checking singularity with cmd:/cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 hostname
Singularity Works...

copy /home/boinc/boinc1/slots/1/shared/ATLAS.root_0
copy /home/boinc/boinc1/slots/1/shared/RTE.tar.gz
copy /home/boinc/boinc1/slots/1/shared/input.tar.gz
copy /home/boinc/boinc1/slots/1/shared/start_atlas.sh
export ATHENA_PROC_NUMBER=2;start atlas job with grep: pandaJobData.out: Datei oder Verzeichnis nicht gefunden
cmd = /cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec --pwd /home/boinc/boinc1/slots/1 -B /cvmfs,/home /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sh start_atlas.sh > runtime_log 2> runtime_log.err
running cmd return value is 0
Moving ./HITS.18605033._050990.pool.root.1 to shared/HITS.pool.root.1
*****************The last 100 lines of the pilot log******************
2019-08-08 22:56:48,138 | INFO     | retrieve            | pilot.util.auxiliary             | make_job_report           | status: LOG_TRANSFER = DONE 
2019-08-08 22:56:48,139 | INFO     | retrieve            | pilot.util.auxiliary             | make_job_report           | pilot state: finished 
2019-08-08 22:56:48,139 | INFO     | retrieve            | pilot.util.auxiliary             | make_job_report           | transexitcode: 0
2019-08-08 22:56:48,139 | INFO     | retrieve            | pilot.util.auxiliary             | make_job_report           | exeerrorcode: 0
2019-08-08 22:56:48,139 | INFO     | retrieve            | pilot.util.auxiliary             | make_job_report           | exeerrordiag: 
2019-08-08 22:56:48,139 | INFO     | retrieve            | pilot.util.auxiliary             | make_job_report           | exitcode: 0
2019-08-08 22:56:48,139 | INFO     | retrieve            | pilot.util.auxiliary             | make_job_report           | exitmsg: OK
2019-08-08 22:56:48,139 | INFO     | retrieve            | pilot.util.auxiliary             | make_job_report           | cpuconsumptiontime: 33880 s
2019-08-08 22:56:48,140 | INFO     | retrieve            | pilot.util.auxiliary             | make_job_report           | nevents: 200
2019-08-08 22:56:48,140 | INFO     | retrieve            | pilot.util.auxiliary             | make_job_report           | neventsw: 0
2019-08-08 22:56:48,140 | INFO     | retrieve            | pilot.util.auxiliary             | make_job_report           | pid: 29868
2019-08-08 22:56:48,140 | INFO     | retrieve            | pilot.util.auxiliary             | make_job_report           | pgrp: 29868
2019-08-08 22:56:48,140 | INFO     | retrieve            | pilot.util.auxiliary             | make_job_report           | corecount: 2
2019-08-08 22:56:48,140 | INFO     | retrieve            | pilot.util.auxiliary             | make_job_report           | event service: False
2019-08-08 22:56:48,140 | INFO     | retrieve            | pilot.util.auxiliary             | make_job_report           | --------------------------------------------------
2019-08-08 22:56:48,140 | INFO     | retrieve            | pilot.util.auxiliary             | make_job_report           | 
2019-08-08 22:56:48,141 | INFO     | retrieve            | pilot.control.job                | has_job_completed         | job 4437615698 has completed
2019-08-08 22:56:48,141 | INFO     | retrieve            | pilot.util.processes             | cleanup                   | overall cleanup function is called
2019-08-08 22:56:48,144 | DEBUG    | retrieve            | pilot.util.processes             | cleanup                   | work directory was removed: /home/boinc/boinc1/slots/1/PanDA_Pilot-4437615698
2019-08-08 22:56:49,150 | INFO     | retrieve            | pilot.info.jobdata               | collect_zombies           | --- collectZombieJob: --- 10, [29868]
2019-08-08 22:56:49,150 | INFO     | retrieve            | pilot.info.jobdata               | collect_zombies           | zombie collector trying to kill pid 29868
2019-08-08 22:56:49,150 | INFO     | retrieve            | pilot.info.jobdata               | collect_zombies           | harmless exception when collecting zombies: [Errno 10] No child processes
2019-08-08 22:56:50,155 | INFO     | retrieve            | pilot.util.processes             | cleanup                   | collected zombie processes
2019-08-08 22:56:50,155 | INFO     | retrieve            | pilot.util.processes             | cleanup                   | will now attempt to kill all subprocesses of pid=29868
2019-08-08 22:56:50,188 | INFO     | retrieve            | pilot.util.processes             | kill_processes            | process IDs to be killed: [29868] (in reverse order)
2019-08-08 22:56:50,216 | WARNING  | retrieve            | pilot.util.processes             | kill_processes            | found no corresponding commands to process id(s)
2019-08-08 22:56:50,216 | INFO     | retrieve            | pilot.util.processes             | kill_orphans              | Do not look for orphan processes in BOINC jobs
2019-08-08 22:56:50,217 | INFO     | retrieve            | pilot.control.job                | retrieve                  | ready for new job
2019-08-08 22:56:50,217 | INFO     | retrieve            | root                             | retrieve                  | pilot has finished for previous job - re-establishing logging
No handlers could be found for logger "pilot.util.mpi"
2019-08-08 22:56:50,724 | DEBUG    | retrieve            | pilot.control.job                | retrieve                  | getjob_requests=1
2019-08-08 22:57:00,771 | DEBUG    | retrieve            | pilot.control.job                | proceed_with_getjob       | proceed_with_getjob called with getjob_requests=1
2019-08-08 22:57:00,771 | DEBUG    | retrieve            | pilot.util.monitoring            | check_local_space         | checking local space on /home/boinc/boinc1/slots/1
2019-08-08 22:57:00,792 | INFO     | retrieve            | pilot.util.monitoring            | check_local_space         | sufficient remaining disk space (880421109760 B)
2019-08-08 22:57:00,792 | WARNING  | retrieve            | pilot.control.job                | proceed_with_getjob       | since timefloor is set to 0, pilot was only allowed to run one job
2019-08-08 22:57:00,793 | DEBUG    | retrieve            | pilot.control.job                | retrieve                  | [job] retrieve thread has finished
2019-08-08 22:57:00,799 | INFO     | monitor             | pilot.control.monitor            | control                   | [monitor] control thread has ended
2019-08-08 22:57:00,800 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | thread count now at 15 threads
2019-08-08 22:57:00,801 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | enumerate: [<_MainThread(MainThread, started 140093281818368)>, <ExcThread(job, started 140093065545472)>, <ExcThread(data, started 140093057152768)>, <ExcThread(copytool_in, started 140092949645056)>, <ExcThread(payload, started 140092941252352)>, <ExcThread(queue_monitoring, started 140092958037760)>, <ExcThread(queue_monitor, started 140092320487168)>, <ExcThread(validate_post, started 140092362450688)>, <ExcThread(validate, started 140092974823168)>, <ExcThread(failed_post, started 140092345665280)>, <ExcThread(create_data_payload, started 140092932859648)>, <ExcThread(job_monitor, started 140092337272576)>, <ExcThread(validate_pre, started 140092924466944)>, <ExcThread(execute_payloads, started 140092328879872)>, <ExcThread(copytool_out, started 140092966430464)>]
2019-08-08 22:57:00,831 | INFO     | validate_pre        | pilot.control.payload            | validate_pre              | [payload] validate_pre thread has finished
2019-08-08 22:57:01,004 | DEBUG    | data                | pilot.control.data               | control                   | data control ending since graceful_stop has been set
2019-08-08 22:57:01,005 | DEBUG    | data                | pilot.control.data               | control                   | [data] control thread has finished
2019-08-08 22:57:01,105 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | thread count now at 13 threads
2019-08-08 22:57:01,106 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | enumerate: [<_MainThread(MainThread, started 140093281818368)>, <ExcThread(job, started 140093065545472)>, <ExcThread(copytool_in, started 140092949645056)>, <ExcThread(payload, started 140092941252352)>, <ExcThread(queue_monitoring, started 140092958037760)>, <ExcThread(queue_monitor, started 140092320487168)>, <ExcThread(validate_post, started 140092362450688)>, <ExcThread(validate, started 140092974823168)>, <ExcThread(failed_post, started 140092345665280)>, <ExcThread(create_data_payload, started 140092932859648)>, <ExcThread(job_monitor, started 140092337272576)>, <ExcThread(execute_payloads, started 140092328879872)>, <ExcThread(copytool_out, started 140092966430464)>]
2019-08-08 22:57:01,110 | DEBUG    | job                 | pilot.control.job                | control                   | job control ending since graceful_stop has been set
2019-08-08 22:57:01,110 | DEBUG    | job                 | pilot.control.job                | control                   | [job] control thread has finished
2019-08-08 22:57:01,145 | DEBUG    | copytool_in         | pilot.control.data               | copytool_in               | [data] copytool_in thread has finished
2019-08-08 22:57:01,146 | DEBUG    | create_data_payload | pilot.control.job                | create_data_payload       | [job] create_data_payload thread has finished
2019-08-08 22:57:01,226 | WARNING  | copytool_out        | pilot.util.common                | should_abort              | data:copytool_out:received graceful stop - abort after this iteration
2019-08-08 22:57:01,307 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | thread count now at 10 threads
2019-08-08 22:57:01,307 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | enumerate: [<_MainThread(MainThread, started 140093281818368)>, <ExcThread(payload, started 140092941252352)>, <ExcThread(queue_monitoring, started 140092958037760)>, <ExcThread(queue_monitor, started 140092320487168)>, <ExcThread(validate_post, started 140092362450688)>, <ExcThread(validate, started 140092974823168)>, <ExcThread(failed_post, started 140092345665280)>, <ExcThread(job_monitor, started 140092337272576)>, <ExcThread(execute_payloads, started 140092328879872)>, <ExcThread(copytool_out, started 140092966430464)>]
2019-08-08 22:57:01,364 | WARNING  | queue_monitoring    | pilot.util.common                | should_abort              | data:queue_monitoring:received graceful stop - abort after this iteration
2019-08-08 22:57:01,421 | DEBUG    | payload             | pilot.control.payload            | control                   | payload control ending since graceful_stop has been set
2019-08-08 22:57:01,421 | DEBUG    | payload             | pilot.control.payload            | control                   | [payload] control thread has finished
2019-08-08 22:57:01,423 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | thread count now at 9 threads
2019-08-08 22:57:01,423 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | enumerate: [<_MainThread(MainThread, started 140093281818368)>, <ExcThread(queue_monitoring, started 140092958037760)>, <ExcThread(queue_monitor, started 140092320487168)>, <ExcThread(validate_post, started 140092362450688)>, <ExcThread(validate, started 140092974823168)>, <ExcThread(failed_post, started 140092345665280)>, <ExcThread(job_monitor, started 140092337272576)>, <ExcThread(execute_payloads, started 140092328879872)>, <ExcThread(copytool_out, started 140092966430464)>]
2019-08-08 22:57:01,718 | INFO     | failed_post         | pilot.control.payload            | failed_post               | [payload] failed_post thread has finished
2019-08-08 22:57:01,725 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | thread count now at 8 threads
2019-08-08 22:57:01,725 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | enumerate: [<_MainThread(MainThread, started 140093281818368)>, <ExcThread(queue_monitoring, started 140092958037760)>, <ExcThread(queue_monitor, started 140092320487168)>, <ExcThread(validate_post, started 140092362450688)>, <ExcThread(validate, started 140092974823168)>, <ExcThread(job_monitor, started 140092337272576)>, <ExcThread(execute_payloads, started 140092328879872)>, <ExcThread(copytool_out, started 140092966430464)>]
2019-08-08 22:57:01,807 | INFO     | execute_payloads    | pilot.control.payload            | execute_payloads          | [payload] execute_payloads thread has finished
2019-08-08 22:57:01,826 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | thread count now at 7 threads
2019-08-08 22:57:01,826 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | enumerate: [<_MainThread(MainThread, started 140093281818368)>, <ExcThread(queue_monitoring, started 140092958037760)>, <ExcThread(queue_monitor, started 140092320487168)>, <ExcThread(validate_post, started 140092362450688)>, <ExcThread(validate, started 140092974823168)>, <ExcThread(job_monitor, started 140092337272576)>, <ExcThread(copytool_out, started 140092966430464)>]
2019-08-08 22:57:02,047 | INFO     | validate_post       | pilot.control.payload            | validate_post             | [payload] validate_post thread has finished
2019-08-08 22:57:02,128 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | thread count now at 6 threads
2019-08-08 22:57:02,129 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | enumerate: [<_MainThread(MainThread, started 140093281818368)>, <ExcThread(queue_monitoring, started 140092958037760)>, <ExcThread(queue_monitor, started 140092320487168)>, <ExcThread(validate, started 140092974823168)>, <ExcThread(job_monitor, started 140092337272576)>, <ExcThread(copytool_out, started 140092966430464)>]
2019-08-08 22:57:02,226 | DEBUG    | copytool_out        | pilot.control.data               | copytool_out              | [data] copytool_out thread has finished
2019-08-08 22:57:02,229 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | thread count now at 5 threads
2019-08-08 22:57:02,230 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | enumerate: [<_MainThread(MainThread, started 140093281818368)>, <ExcThread(queue_monitoring, started 140092958037760)>, <ExcThread(queue_monitor, started 140092320487168)>, <ExcThread(validate, started 140092974823168)>, <ExcThread(job_monitor, started 140092337272576)>]
2019-08-08 22:57:02,232 | DEBUG    | validate            | pilot.control.job                | validate                  | [job] validate thread has finished
2019-08-08 22:57:02,330 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | thread count now at 4 threads
2019-08-08 22:57:02,331 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | enumerate: [<_MainThread(MainThread, started 140093281818368)>, <ExcThread(queue_monitoring, started 140092958037760)>, <ExcThread(queue_monitor, started 140092320487168)>, <ExcThread(job_monitor, started 140092337272576)>]
2019-08-08 22:57:02,649 | WARNING  | queue_monitor       | pilot.util.common                | should_abort              | job:queue_monitor:received graceful stop - abort after this iteration
2019-08-08 22:57:02,650 | DEBUG    | queue_monitor       | pilot.control.job                | queue_monitor             | [job] queue monitor thread has finished
2019-08-08 22:57:02,733 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | thread count now at 3 threads
2019-08-08 22:57:02,733 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | enumerate: [<_MainThread(MainThread, started 140093281818368)>, <ExcThread(queue_monitoring, started 140092958037760)>, <ExcThread(job_monitor, started 140092337272576)>]
2019-08-08 22:57:04,365 | DEBUG    | queue_monitoring    | pilot.control.data               | queue_monitoring          | [data] queue_monitor thread has finished
2019-08-08 22:57:04,444 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | thread count now at 2 threads
2019-08-08 22:57:04,444 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | enumerate: [<_MainThread(MainThread, started 140093281818368)>, <ExcThread(job_monitor, started 140092337272576)>]
2019-08-08 22:57:19,791 | WARNING  | job_monitor         | pilot.control.job                | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 61 s)
2019-08-08 22:57:19,791 | DEBUG    | job_monitor         | pilot.control.job                | job_monitor               | [job] job monitor thread has finished
2019-08-08 22:57:19,838 | INFO     | MainThread          | pilot.workflow.generic           | run                       | end of generic workflow (traces error code: 0)
2019-08-08 22:57:19,838 | INFO     | MainThread          | root                             | wrap_up                   | traces error code: 0
2019-08-08 22:57:19,838 | INFO     | MainThread          | root                             | wrap_up                   | pilot has finished
2019-08-08 22:57:19 UTC [wrapper] ==== pilot stdout END ====
2019-08-08 22:57:19 UTC [wrapper] ==== wrapper stdout RESUME ====
2019-08-08 22:57:19 UTC [wrapper] Pilot exit status: 0
2019-08-08 22:57:19 UTC [wrapper] STATUSCODE: 0
2019-08-08 22:57:19 UTC [wrapper] apfmon messages muted
---- find pandaID.out ----
insgesamt 48
-rw-------  1 boinc boinc 11357 25. Jul 16:38 LICENSE
drwx------ 14 boinc boinc  4096  8. Aug 20:07 pilot
-rwx------  1 boinc boinc 20463 25. Jul 16:38 pilot.py
-rw-------  1 boinc boinc     8  7. Aug 13:02 PILOTVERSION
-rw-------  1 boinc boinc  2251 25. Jul 16:38 README.md
-rw-------  1 boinc boinc   221 25. Jul 16:38 TODO.md

2019-08-08 22:57:20 UTC [wrapper] Test setup, not cleaning
2019-08-08 22:57:20 UTC [wrapper] ==== wrapper stdout END ====
2019-08-08 22:57:20 UTC [wrapper] ==== wrapper stderr END ====
***************diag file************
runtimeenvironments=APPS/HEP/ATLAS-SITE;
Processors=1
WallTime=17447.67s
KernelTime=211.60s
UserTime=33890.33s
CPUUsage=195%
MaxResidentMemory=2028912kB
AverageResidentMemory=0kB
AverageTotalMemory=0kB
AverageUnsharedMemory=0kB
AverageUnsharedStack=0kB
AverageSharedMemory=0kB
PageSize=4096B
MajorPageFaults=528557
MinorPageFaults=10644821
Swaps=0
ForcedSwitches=6454123
WaitSwitches=11405676
Inputs=126291248
Outputs=516280
SocketReceived=0
SocketSent=0
Signals=0

nodename=gyllic@boinc-debian-rechner
exitcode=0
******************************WorkDir***********************
insgesamt 380816
drwxrwx--x 7 boinc boinc      4096 Aug  9 00:57 .
drwxr-x--x 4 boinc boinc      4096 Aug  8 20:06 ..
-rw------- 1 boinc boinc   7409227 Aug  8 20:07 agis_ddmendpoints.json
-rw------- 1 boinc boinc   4533639 Aug  8 20:07 agis_schedconf.cvmfs.json
drwx------ 2 boinc boinc      4096 Aug  8 20:06 .alrb
drwxr-xr-x 3 boinc boinc      4096 Aug  8 20:06 APPS
drwxr-xr-x 2 boinc boinc      4096 Aug  8 20:07 .arc
-rw------- 1 boinc boinc       546 Aug  8 20:06 .asetup
-rw------- 1 boinc boinc       826 Aug  8 20:08 .asetup.save
-rw-r--r-- 1 boinc boinc         0 Aug  8 20:06 boinc_lockfile
-rw-r--r-- 1 boinc boinc      8192 Aug  9 00:57 boinc_mmap_file
-rw-r--r-- 1 boinc boinc       537 Aug  9 00:50 boinc_task_state.xml
-rw-r--r-- 1 boinc boinc 375729118 Aug  8 20:06 EVNT.17323852._002218.pool.root.1
-rw------- 1 boinc boinc     51527 Aug  9 00:56 heartbeat.json
-rw-r--r-- 1 boinc boinc      5953 Aug  8 20:06 init_data.xml
-rw-r--r-- 1 boinc boinc    262347 Aug  8 20:06 input.tar.gz
-rw-r--r-- 1 boinc boinc       112 Aug  8 20:06 job.xml
-rw------- 1 boinc boinc    931534 Aug  9 00:57 log.18605033._050990.job.log.1
-rw------- 1 boinc boinc    574921 Aug  9 00:56 log.18605033._050990.job.log.tgz.1
-rw------- 1 boinc boinc       514 Aug  9 00:57 o9eKDmZmzFvnShfckohDCDFpABFKDmABFKDmUbSXDmABFKDmuQ8p0m.diag
-rw------- 1 boinc boinc       391 Aug  9 00:57 output.list
-rw------- 1 boinc boinc      2887 Aug  8 17:45 pandaJobData.out
drwx------ 3 boinc boinc      4096 Aug  7 13:02 pilot2
-rw-r--r-- 1 boinc boinc    253018 Aug  8 17:32 pilot2.tar.gz
-rw------- 1 boinc boinc     12582 Aug  9 00:57 pilotlog.txt
-rw-r--r-- 1 boinc boinc      4468 Aug  8 17:45 queuedata.json
-rw-r--r-- 1 boinc boinc       815 Aug  8 20:06 RTE.tar.gz
-rwxr-xr-x 1 boinc boinc      8648 Aug  8 20:06 run_atlas
-rwx------ 1 boinc boinc     15232 Aug  8 17:45 runpilot2-wrapper.sh
-rw-r--r-- 1 boinc boinc       692 Aug  9 00:57 runtime_log
-rw-r--r-- 1 boinc boinc      8040 Aug  9 00:57 runtime_log.err
-rw------- 1 boinc boinc       247 Aug  8 20:06 setup.sh.local
drwxrwx--x 2 boinc boinc      4096 Aug  9 00:57 shared
-rw-r--r-- 1 boinc boinc      8688 Aug  8 20:06 start_atlas.sh
-rw-r--r-- 1 boinc boinc     19961 Aug  9 00:57 stderr.txt
-rw-r--r-- 1 boinc boinc       107 Aug  8 20:06 wrapper_26015_x86_64-pc-linux-gnu
-rw-r--r-- 1 boinc boinc        28 Aug  9 00:57 wrapper_checkpoint.txt

running start_atlas return value is 0
Parent exit 0
child process exit 0
00:57:20 (22898): run_atlas exited; CPU time 33890.704000
00:57:20 (22898): called boinc_finish(0)

</stderr_txt>
]]>

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