Name | hQcMDmNU3FvnShfckohDCDFpABFKDmABFKDmzvYXDmABFKDmqms7mm_0 |
Workunit | 1915154 |
Created | 8 Aug 2019, 19:42:54 UTC |
Sent | 8 Aug 2019, 20:30:15 UTC |
Report deadline | 15 Aug 2019, 20:30:15 UTC |
Received | 8 Aug 2019, 21:58:54 UTC |
Server state | Over |
Outcome | Success |
Client state | Done |
Exit status | 0 (0x00000000) |
Computer ID | 4132 |
Run time | 1 hours 20 min 32 sec |
CPU time | 7 hours 27 min 41 sec |
Validate state | Valid |
Credit | 318.34 |
Device peak FLOPS | 28.46 GFLOPS |
Application version | ATLAS Simulation v0.70 (native_mt) x86_64-pc-linux-gnu |
Peak working set size | 1.85 GB |
Peak swap size | 6.19 GB |
Peak disk usage | 835.65 MB |
<core_client_version>7.6.31</core_client_version> <![CDATA[ <stderr_txt> 14:36:15 (17689): wrapper (7.7.26015): starting 14:36:15 (17689): wrapper: running run_atlas (--nthreads 8) singularity image is /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sys.argv = ['run_atlas', '--nthreads', '8'] THREADS=8 Checking for CVMFS CVMFS is installed OS:cat: /etc/redhat-release: No such file or directory This is not SLC6, need to run with Singularity.... Checking Singularity... Singularity is installed, version 2.4.2-dist Testing the function of Singularity... Checking singularity with cmd:singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 hostname Singularity Works... copy /var/lib/boinc2/slots/28/shared/RTE.tar.gz copy /var/lib/boinc2/slots/28/shared/ATLAS.root_0 copy /var/lib/boinc2/slots/28/shared/input.tar.gz copy /var/lib/boinc2/slots/28/shared/start_atlas.sh export ATHENA_PROC_NUMBER=8;start atlas job with grep: pandaJobData.out: No such file or directory cmd = singularity exec --pwd /var/lib/boinc2/slots/28 -B /cvmfs,/var /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sh start_atlas.sh > runtime_log 2> runtime_log.err running cmd return value is 0 Moving ./HITS.18605033._051504.pool.root.1 to shared/HITS.pool.root.1 *****************The last 100 lines of the pilot log****************** 2019-08-08 21:56:17,530 | INFO | retrieve | pilot.util.auxiliary | make_job_report | 2019-08-08 21:56:17,531 | INFO | retrieve | pilot.util.auxiliary | make_job_report | job summary report 2019-08-08 21:56:17,531 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-08-08 21:56:17,531 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4440058176 2019-08-08 21:56:17,531 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18605033 2019-08-08 21:56:17,531 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none) 2019-08-08 21:56:17,531 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE 2019-08-08 21:56:17,531 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished 2019-08-08 21:56:17,531 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0 2019-08-08 21:56:17,531 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0 2019-08-08 21:56:17,532 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag: 2019-08-08 21:56:17,532 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0 2019-08-08 21:56:17,532 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK 2019-08-08 21:56:17,532 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 27176 s 2019-08-08 21:56:17,532 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 200 2019-08-08 21:56:17,532 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0 2019-08-08 21:56:17,532 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 68088 2019-08-08 21:56:17,532 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: 68088 2019-08-08 21:56:17,532 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 8 2019-08-08 21:56:17,532 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False 2019-08-08 21:56:17,532 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-08-08 21:56:17,533 | INFO | retrieve | pilot.util.auxiliary | make_job_report | 2019-08-08 21:56:17,533 | INFO | retrieve | pilot.control.job | has_job_completed | job 4440058176 has completed 2019-08-08 21:56:17,533 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called 2019-08-08 21:56:17,539 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /var/lib/boinc2/slots/28/PanDA_Pilot-4440058176 2019-08-08 21:56:18,543 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [68088] 2019-08-08 21:56:18,544 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 68088 2019-08-08 21:56:18,544 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes 2019-08-08 21:56:19,547 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes 2019-08-08 21:56:19,547 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=68088 2019-08-08 21:56:19,717 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [68088] (in reverse order) 2019-08-08 21:56:19,818 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s) 2019-08-08 21:56:19,819 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs 2019-08-08 21:56:19,819 | INFO | retrieve | pilot.control.job | retrieve | ready for new job 2019-08-08 21:56:19,819 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging No handlers could be found for logger "pilot.util.mpi" 2019-08-08 21:56:20,326 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1 2019-08-08 21:56:30,374 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1 2019-08-08 21:56:30,374 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /var/lib/boinc2/slots/28 2019-08-08 21:56:30,399 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (277947088896 B) 2019-08-08 21:56:30,399 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job 2019-08-08 21:56:30,400 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished 2019-08-08 21:56:30,416 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration 2019-08-08 21:56:30,418 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished 2019-08-08 21:56:30,502 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished 2019-08-08 21:56:30,678 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set 2019-08-08 21:56:30,678 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished 2019-08-08 21:56:30,698 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set 2019-08-08 21:56:30,698 | DEBUG | data | pilot.control.data | control | [data] control thread has finished 2019-08-08 21:56:30,804 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 12 threads 2019-08-08 21:56:30,805 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140095192712960)>, <ExcThread(job, started 140094976440064)>, <ExcThread(copytool_in, started 140093964670720)>, <ExcThread(failed_post, started 140094677690112)>, <ExcThread(job_monitor, started 140094686082816)>, <ExcThread(queue_monitoring, started 140094669297408)>, <ExcThread(validate_post, started 140094694475520)>, <ExcThread(monitor, started 140094711260928)>, <ExcThread(copytool_out, started 140094942869248)>, <ExcThread(execute_payloads, started 140093981456128)>, <ExcThread(validate, started 140094968047360)>, <ExcThread(queue_monitor, started 140093973063424)>] 2019-08-08 21:56:30,929 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished 2019-08-08 21:56:30,938 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished 2019-08-08 21:56:31,066 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended 2019-08-08 21:56:31,069 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 9 threads 2019-08-08 21:56:31,070 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140095192712960)>, <ExcThread(job, started 140094976440064)>, <ExcThread(failed_post, started 140094677690112)>, <ExcThread(job_monitor, started 140094686082816)>, <ExcThread(queue_monitoring, started 140094669297408)>, <ExcThread(validate_post, started 140094694475520)>, <ExcThread(copytool_out, started 140094942869248)>, <ExcThread(execute_payloads, started 140093981456128)>, <ExcThread(queue_monitor, started 140093973063424)>] 2019-08-08 21:56:31,282 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set 2019-08-08 21:56:31,282 | DEBUG | job | pilot.control.job | control | [job] control thread has finished 2019-08-08 21:56:31,371 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 8 threads 2019-08-08 21:56:31,372 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140095192712960)>, <ExcThread(failed_post, started 140094677690112)>, <ExcThread(job_monitor, started 140094686082816)>, <ExcThread(queue_monitoring, started 140094669297408)>, <ExcThread(validate_post, started 140094694475520)>, <ExcThread(copytool_out, started 140094942869248)>, <ExcThread(execute_payloads, started 140093981456128)>, <ExcThread(queue_monitor, started 140093973063424)>] 2019-08-08 21:56:31,417 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished 2019-08-08 21:56:31,472 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 7 threads 2019-08-08 21:56:31,473 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140095192712960)>, <ExcThread(failed_post, started 140094677690112)>, <ExcThread(job_monitor, started 140094686082816)>, <ExcThread(queue_monitoring, started 140094669297408)>, <ExcThread(validate_post, started 140094694475520)>, <ExcThread(execute_payloads, started 140093981456128)>, <ExcThread(queue_monitor, started 140093973063424)>] 2019-08-08 21:56:31,505 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished 2019-08-08 21:56:31,560 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished 2019-08-08 21:56:31,574 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 5 threads 2019-08-08 21:56:31,574 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140095192712960)>, <ExcThread(job_monitor, started 140094686082816)>, <ExcThread(queue_monitoring, started 140094669297408)>, <ExcThread(validate_post, started 140094694475520)>, <ExcThread(queue_monitor, started 140093973063424)>] 2019-08-08 21:56:31,902 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished 2019-08-08 21:56:31,912 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration 2019-08-08 21:56:31,977 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 4 threads 2019-08-08 21:56:31,977 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140095192712960)>, <ExcThread(job_monitor, started 140094686082816)>, <ExcThread(queue_monitoring, started 140094669297408)>, <ExcThread(queue_monitor, started 140093973063424)>] 2019-08-08 21:56:32,017 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration 2019-08-08 21:56:32,017 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished 2019-08-08 21:56:32,078 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 3 threads 2019-08-08 21:56:32,078 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140095192712960)>, <ExcThread(job_monitor, started 140094686082816)>, <ExcThread(queue_monitoring, started 140094669297408)>] 2019-08-08 21:56:34,913 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished 2019-08-08 21:56:34,996 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 2 threads 2019-08-08 21:56:34,996 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140095192712960)>, <ExcThread(job_monitor, started 140094686082816)>] 2019-08-08 21:56:46,297 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 62 s) 2019-08-08 21:56:46,297 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished 2019-08-08 21:56:46,363 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0) 2019-08-08 21:56:46,363 | INFO | MainThread | root | wrap_up | traces error code: 0 2019-08-08 21:56:46,363 | INFO | MainThread | root | wrap_up | pilot has finished 2019-08-08 21:56:46 UTC [wrapper] ==== pilot stdout END ==== 2019-08-08 21:56:46 UTC [wrapper] ==== wrapper stdout RESUME ==== 2019-08-08 21:56:46 UTC [wrapper] Pilot exit status: 0 2019-08-08 21:56:46 UTC [wrapper] STATUSCODE: 0 2019-08-08 21:56:46 UTC [wrapper] apfmon messages muted ---- find pandaID.out ---- total 48 -rw-rw-r-- 1 320 320 11357 Jul 25 08:38 LICENSE drwxrwxr-x 14 320 320 4096 Aug 8 14:37 pilot -rwxrwxr-x 1 320 320 20463 Jul 25 08:38 pilot.py -rw-r--r-- 1 320 320 8 Aug 7 05:02 PILOTVERSION -rw-rw-r-- 1 320 320 2251 Jul 25 08:38 README.md -rw-rw-r-- 1 320 320 221 Jul 25 08:38 TODO.md 2019-08-08 21:56:46 UTC [wrapper] Test setup, not cleaning 2019-08-08 21:56:46 UTC [wrapper] ==== wrapper stdout END ==== 2019-08-08 21:56:46 UTC [wrapper] ==== wrapper stderr END ==== ***************diag file************ runtimeenvironments=APPS/HEP/ATLAS-SITE; Processors=1 WallTime=4806.85s KernelTime=420.71s UserTime=26861.31s CPUUsage=567% MaxResidentMemory=1942500kB AverageResidentMemory=0kB AverageTotalMemory=0kB AverageUnsharedMemory=0kB AverageUnsharedStack=0kB AverageSharedMemory=0kB PageSize=4096B MajorPageFaults=398034 MinorPageFaults=24467314 Swaps=0 ForcedSwitches=286054 WaitSwitches=6297158 Inputs=73046248 Outputs=490928 SocketReceived=0 SocketSent=0 Signals=0 nodename=wHewitt@d8 exitcode=0 ******************************WorkDir*********************** total 382040 drwxrwx--x 7 root root 4096 Aug 8 15:56 . drwxrwxrwx 33 root root 4096 Aug 8 14:36 .. -rw------- 1 root root 7409227 Aug 8 14:38 agis_ddmendpoints.json -rw------- 1 root root 4533672 Aug 8 14:38 agis_schedconf.cvmfs.json drwx------ 2 root root 4096 Aug 8 14:36 .alrb drwxr-xr-x 3 root root 4096 Aug 8 14:36 APPS drwxr-xr-x 2 root root 4096 Aug 8 14:37 .arc -rw------- 1 root root 544 Aug 8 14:36 .asetup -rw------- 1 root root 829 Aug 8 14:39 .asetup.save -rw-r--r-- 1 root root 0 Aug 8 14:36 boinc_lockfile -rw-r--r-- 1 root root 8192 Aug 8 15:56 boinc_mmap_file -rw-r--r-- 1 root root 536 Aug 8 15:47 boinc_task_state.xml -rw-r--r-- 1 root root 376942201 Aug 8 14:36 EVNT.17323852._002120.pool.root.1 -rw------- 1 root root 59041 Aug 8 15:56 heartbeat.json -rw------- 1 root root 493 Aug 8 15:56 hQcMDmNU3FvnShfckohDCDFpABFKDmABFKDmzvYXDmABFKDmqms7mm.diag -rw-r--r-- 1 root root 8514 Aug 8 14:36 init_data.xml -rw-r--r-- 1 root root 262357 Aug 8 14:36 input.tar.gz -rw-r--r-- 1 root root 112 Aug 8 14:36 job.xml -rw------- 1 root root 384562 Aug 8 15:56 log.18605033._051504.job.log.1 -rw------- 1 root root 1163066 Aug 8 15:56 log.18605033._051504.job.log.tgz.1 -rw------- 1 root root 391 Aug 8 15:56 output.list -rw------- 1 4871 1028 2887 Aug 8 13:42 pandaJobData.out drwxr-xr-x 3 320 320 4096 Aug 7 05:02 pilot2 -rw-r--r-- 1 root root 253018 Aug 8 13:23 pilot2.tar.gz -rw------- 1 root root 10072 Aug 8 15:56 pilotlog.txt -rw-r--r-- 1 root root 4468 Aug 8 13:40 queuedata.json -rw-r--r-- 1 root root 815 Aug 8 14:36 RTE.tar.gz -rwxr-xr-x 1 root root 8648 Aug 8 14:36 run_atlas -rwx------ 1 4871 1028 15232 Aug 8 13:42 runpilot2-wrapper.sh -rw-r--r-- 1 root root 692 Aug 8 15:56 runtime_log -rw-r--r-- 1 root root 6871 Aug 8 15:56 runtime_log.err drwxrwx--x 2 root root 4096 Aug 8 15:56 shared -rw-r--r-- 1 root root 8688 Aug 8 14:36 start_atlas.sh -rw-r--r-- 1 root root 18060 Aug 8 15:56 stderr.txt -rw-r--r-- 1 root root 107 Aug 8 14:36 wrapper_26015_x86_64-pc-linux-gnu -rw-r--r-- 1 root root 27 Aug 8 15:56 wrapper_checkpoint.txt running start_atlas return value is 0 Parent exit 0 child process exit 0 15:56:46 (17689): run_atlas exited; CPU time 26861.508000 15:56:46 (17689): called boinc_finish(0) </stderr_txt> ]]>
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