Name | LlIKDmay4FvnShfckohDCDFpABFKDmABFKDmxabXDmABFKDmN0hB1m_0 |
Workunit | 1915193 |
Created | 8 Aug 2019, 21:19:08 UTC |
Sent | 8 Aug 2019, 21:58:54 UTC |
Report deadline | 15 Aug 2019, 21:58:54 UTC |
Received | 8 Aug 2019, 23:43:40 UTC |
Server state | Over |
Outcome | Success |
Client state | Done |
Exit status | 0 (0x00000000) |
Computer ID | 4132 |
Run time | 1 hours 36 min 15 sec |
CPU time | 8 hours 2 min 16 sec |
Validate state | Valid |
Credit | 380.41 |
Device peak FLOPS | 28.46 GFLOPS |
Application version | ATLAS Simulation v0.70 (native_mt) x86_64-pc-linux-gnu |
Peak working set size | 1.84 GB |
Peak swap size | 2.55 GB |
Peak disk usage | 859.10 MB |
<core_client_version>7.6.31</core_client_version> <![CDATA[ <stderr_txt> 16:05:11 (61937): wrapper (7.7.26015): starting 16:05:11 (61937): wrapper: running run_atlas (--nthreads 8) singularity image is /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sys.argv = ['run_atlas', '--nthreads', '8'] THREADS=8 Checking for CVMFS CVMFS is installed OS:cat: /etc/redhat-release: No such file or directory This is not SLC6, need to run with Singularity.... Checking Singularity... Singularity is installed, version 2.4.2-dist Testing the function of Singularity... Checking singularity with cmd:singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 hostname Singularity Works... copy /var/lib/boinc2/slots/0/shared/RTE.tar.gz copy /var/lib/boinc2/slots/0/shared/ATLAS.root_0 copy /var/lib/boinc2/slots/0/shared/input.tar.gz copy /var/lib/boinc2/slots/0/shared/start_atlas.sh export ATHENA_PROC_NUMBER=8;start atlas job with grep: pandaJobData.out: No such file or directory cmd = singularity exec --pwd /var/lib/boinc2/slots/0 -B /cvmfs,/var /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sh start_atlas.sh > runtime_log 2> runtime_log.err running cmd return value is 0 Moving ./HITS.18604991._041488.pool.root.1 to shared/HITS.pool.root.1 *****************The last 100 lines of the pilot log****************** 2019-08-08 23:40:54,195 | DEBUG | queue_monitor | pilot.control.job | send_state | wrote heartbeat to file /var/lib/boinc2/slots/0/heartbeat.json 2019-08-08 23:40:54,195 | INFO | queue_monitor | pilot.control.job | queue_monitor | job 4440710404 was dequeued from the monitored payloads queue 2019-08-08 23:40:54,918 | INFO | retrieve | pilot.util.auxiliary | make_job_report | 2019-08-08 23:40:54,918 | INFO | retrieve | pilot.util.auxiliary | make_job_report | job summary report 2019-08-08 23:40:54,918 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-08-08 23:40:54,918 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4440710404 2019-08-08 23:40:54,918 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18604991 2019-08-08 23:40:54,918 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none) 2019-08-08 23:40:54,918 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE 2019-08-08 23:40:54,918 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished 2019-08-08 23:40:54,918 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0 2019-08-08 23:40:54,919 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0 2019-08-08 23:40:54,919 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag: 2019-08-08 23:40:54,919 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0 2019-08-08 23:40:54,919 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK 2019-08-08 23:40:54,919 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 29176 s 2019-08-08 23:40:54,919 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 200 2019-08-08 23:40:54,919 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0 2019-08-08 23:40:54,919 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 32876 2019-08-08 23:40:54,919 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: 32876 2019-08-08 23:40:54,919 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 8 2019-08-08 23:40:54,919 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False 2019-08-08 23:40:54,919 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-08-08 23:40:54,919 | INFO | retrieve | pilot.util.auxiliary | make_job_report | 2019-08-08 23:40:54,919 | INFO | retrieve | pilot.control.job | has_job_completed | job 4440710404 has completed 2019-08-08 23:40:54,920 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called 2019-08-08 23:40:54,925 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /var/lib/boinc2/slots/0/PanDA_Pilot-4440710404 2019-08-08 23:40:55,930 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [32876] 2019-08-08 23:40:55,930 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 32876 2019-08-08 23:40:55,930 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes 2019-08-08 23:40:56,934 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes 2019-08-08 23:40:56,934 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=32876 2019-08-08 23:40:57,041 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [32876] (in reverse order) 2019-08-08 23:40:57,108 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s) 2019-08-08 23:40:57,108 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs 2019-08-08 23:40:57,109 | INFO | retrieve | pilot.control.job | retrieve | ready for new job 2019-08-08 23:40:57,109 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging No handlers could be found for logger "pilot.util.mpi" 2019-08-08 23:40:57,614 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1 2019-08-08 23:41:07,662 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1 2019-08-08 23:41:07,662 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /var/lib/boinc2/slots/0 2019-08-08 23:41:07,685 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (278773366784 B) 2019-08-08 23:41:07,686 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job 2019-08-08 23:41:07,686 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished 2019-08-08 23:41:07,934 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set 2019-08-08 23:41:07,934 | DEBUG | data | pilot.control.data | control | [data] control thread has finished 2019-08-08 23:41:07,952 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration 2019-08-08 23:41:08,071 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 15 threads 2019-08-08 23:41:08,071 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140217460942592)>, <ExcThread(job, started 140217245460224)>, <ExcThread(create_data_payload, started 140217220282112)>, <ExcThread(queue_monitor, started 140216237020928)>, <ExcThread(validate, started 140217237067520)>, <ExcThread(validate_post, started 140216824215296)>, <ExcThread(monitor, started 140216849393408)>, <ExcThread(validate_pre, started 140216857786112)>, <ExcThread(job_monitor, started 140216253806336)>, <ExcThread(copytool_out, started 140217211889408)>, <ExcThread(copytool_in, started 140216815822592)>, <ExcThread(execute_payloads, started 140216245413632)>, <ExcThread(queue_monitoring, started 140216841000704)>, <ExcThread(payload, started 140217203496704)>, <ExcThread(failed_post, started 140216807429888)>] 2019-08-08 23:41:08,105 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration 2019-08-08 23:41:08,142 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished 2019-08-08 23:41:08,434 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended 2019-08-08 23:41:08,436 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 13 threads 2019-08-08 23:41:08,436 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140217460942592)>, <ExcThread(job, started 140217245460224)>, <ExcThread(create_data_payload, started 140217220282112)>, <ExcThread(queue_monitor, started 140216237020928)>, <ExcThread(validate, started 140217237067520)>, <ExcThread(validate_post, started 140216824215296)>, <ExcThread(validate_pre, started 140216857786112)>, <ExcThread(job_monitor, started 140216253806336)>, <ExcThread(copytool_out, started 140217211889408)>, <ExcThread(execute_payloads, started 140216245413632)>, <ExcThread(queue_monitoring, started 140216841000704)>, <ExcThread(payload, started 140217203496704)>, <ExcThread(failed_post, started 140216807429888)>] 2019-08-08 23:41:08,486 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished 2019-08-08 23:41:08,646 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished 2019-08-08 23:41:08,738 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 11 threads 2019-08-08 23:41:08,738 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140217460942592)>, <ExcThread(job, started 140217245460224)>, <ExcThread(create_data_payload, started 140217220282112)>, <ExcThread(queue_monitor, started 140216237020928)>, <ExcThread(validate, started 140217237067520)>, <ExcThread(validate_pre, started 140216857786112)>, <ExcThread(job_monitor, started 140216253806336)>, <ExcThread(copytool_out, started 140217211889408)>, <ExcThread(queue_monitoring, started 140216841000704)>, <ExcThread(payload, started 140217203496704)>, <ExcThread(failed_post, started 140216807429888)>] 2019-08-08 23:41:08,777 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set 2019-08-08 23:41:08,777 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished 2019-08-08 23:41:08,891 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set 2019-08-08 23:41:08,892 | DEBUG | job | pilot.control.job | control | [job] control thread has finished 2019-08-08 23:41:08,902 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 9 threads 2019-08-08 23:41:08,902 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140217460942592)>, <ExcThread(create_data_payload, started 140217220282112)>, <ExcThread(queue_monitor, started 140216237020928)>, <ExcThread(validate, started 140217237067520)>, <ExcThread(validate_pre, started 140216857786112)>, <ExcThread(job_monitor, started 140216253806336)>, <ExcThread(copytool_out, started 140217211889408)>, <ExcThread(queue_monitoring, started 140216841000704)>, <ExcThread(failed_post, started 140216807429888)>] 2019-08-08 23:41:08,912 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished 2019-08-08 23:41:08,916 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished 2019-08-08 23:41:08,952 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished 2019-08-08 23:41:09,002 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 6 threads 2019-08-08 23:41:09,002 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140217460942592)>, <ExcThread(create_data_payload, started 140217220282112)>, <ExcThread(queue_monitor, started 140216237020928)>, <ExcThread(job_monitor, started 140216253806336)>, <ExcThread(queue_monitoring, started 140216841000704)>, <ExcThread(failed_post, started 140216807429888)>] 2019-08-08 23:41:09,150 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished 2019-08-08 23:41:09,173 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished 2019-08-08 23:41:09,183 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration 2019-08-08 23:41:09,183 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished 2019-08-08 23:41:09,204 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 3 threads 2019-08-08 23:41:09,204 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140217460942592)>, <ExcThread(job_monitor, started 140216253806336)>, <ExcThread(queue_monitoring, started 140216841000704)>] 2019-08-08 23:41:11,105 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished 2019-08-08 23:41:11,113 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 2 threads 2019-08-08 23:41:11,114 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140217460942592)>, <ExcThread(job_monitor, started 140216253806336)>] 2019-08-08 23:41:23,822 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 61 s) 2019-08-08 23:41:23,822 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished 2019-08-08 23:41:23,883 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0) 2019-08-08 23:41:23,883 | INFO | MainThread | root | wrap_up | traces error code: 0 2019-08-08 23:41:23,884 | INFO | MainThread | root | wrap_up | pilot has finished 2019-08-08 23:41:24 UTC [wrapper] ==== pilot stdout END ==== 2019-08-08 23:41:24 UTC [wrapper] ==== wrapper stdout RESUME ==== 2019-08-08 23:41:24 UTC [wrapper] Pilot exit status: 0 2019-08-08 23:41:24 UTC [wrapper] STATUSCODE: 0 2019-08-08 23:41:24 UTC [wrapper] apfmon messages muted ---- find pandaID.out ---- total 48 -rw-rw-r-- 1 320 320 11357 Jul 25 08:38 LICENSE drwxrwxr-x 14 320 320 4096 Aug 8 16:05 pilot -rwxrwxr-x 1 320 320 20463 Jul 25 08:38 pilot.py -rw-r--r-- 1 320 320 8 Aug 7 05:02 PILOTVERSION -rw-rw-r-- 1 320 320 2251 Jul 25 08:38 README.md -rw-rw-r-- 1 320 320 221 Jul 25 08:38 TODO.md 2019-08-08 23:41:24 UTC [wrapper] Test setup, not cleaning 2019-08-08 23:41:24 UTC [wrapper] ==== wrapper stdout END ==== 2019-08-08 23:41:24 UTC [wrapper] ==== wrapper stderr END ==== ***************diag file************ runtimeenvironments=APPS/HEP/ATLAS-SITE; Processors=1 WallTime=5771.27s KernelTime=343.78s UserTime=28936.42s CPUUsage=507% MaxResidentMemory=1975452kB AverageResidentMemory=0kB AverageTotalMemory=0kB AverageUnsharedMemory=0kB AverageUnsharedStack=0kB AverageSharedMemory=0kB PageSize=4096B MajorPageFaults=436016 MinorPageFaults=16760353 Swaps=0 ForcedSwitches=166077 WaitSwitches=6874238 Inputs=70608888 Outputs=546488 SocketReceived=0 SocketSent=0 Signals=0 nodename=wHewitt@d8 exitcode=0 ******************************WorkDir*********************** total 384440 drwxrwxrwx 7 root root 4096 Aug 8 17:41 . drwxrwxrwx 33 root root 4096 Aug 8 14:36 .. -rw------- 1 root root 7409227 Aug 8 16:05 agis_ddmendpoints.json -rw------- 1 root root 4533689 Aug 8 16:05 agis_schedconf.cvmfs.json drwx------ 2 root root 4096 Aug 8 16:05 .alrb drwxr-xr-x 3 root root 4096 Aug 8 16:05 APPS drwxr-xr-x 2 root root 4096 Aug 8 16:05 .arc -rw------- 1 root root 543 Aug 8 16:05 .asetup -rw------- 1 root root 829 Aug 8 16:06 .asetup.save -rw-r--r-- 1 root root 0 Aug 8 16:05 boinc_lockfile -rw-r--r-- 1 root root 8192 Aug 8 17:41 boinc_mmap_file -rw-r--r-- 1 root root 536 Aug 8 17:20 boinc_task_state.xml -rw-r--r-- 1 root root 379320243 Aug 8 16:05 EVNT.17323818._001178.pool.root.1 -rw------- 1 root root 74074 Aug 8 17:40 heartbeat.json -rw-r--r-- 1 root root 8513 Aug 8 16:05 init_data.xml -rw-r--r-- 1 root root 262337 Aug 8 16:05 input.tar.gz -rw-r--r-- 1 root root 112 Aug 8 16:05 job.xml -rw------- 1 root root 493 Aug 8 17:41 LlIKDmay4FvnShfckohDCDFpABFKDmABFKDmxabXDmABFKDmN0hB1m.diag -rw------- 1 root root 440793 Aug 8 17:41 log.18604991._041488.job.log.1 -rw------- 1 root root 1167433 Aug 8 17:40 log.18604991._041488.job.log.tgz.1 -rw------- 1 root root 391 Aug 8 17:41 output.list -rw------- 1 4871 1028 2872 Aug 8 15:18 pandaJobData.out drwxr-xr-x 3 320 320 4096 Aug 7 05:02 pilot2 -rw-r--r-- 1 root root 253018 Aug 8 14:34 pilot2.tar.gz -rw------- 1 root root 10238 Aug 8 17:41 pilotlog.txt -rw-r--r-- 1 root root 4468 Aug 8 15:15 queuedata.json -rw-r--r-- 1 root root 815 Aug 8 16:05 RTE.tar.gz -rwxr-xr-x 1 root root 8648 Aug 8 16:05 run_atlas -rwx------ 1 4871 1028 15232 Aug 8 15:18 runpilot2-wrapper.sh -rw-r--r-- 1 root root 692 Aug 8 17:41 runtime_log -rw-r--r-- 1 root root 6844 Aug 8 17:41 runtime_log.err drwxrwx--x 2 root root 4096 Aug 8 17:41 shared -rw-r--r-- 1 root root 8688 Aug 8 16:05 start_atlas.sh -rw-r--r-- 1 root root 18589 Aug 8 17:41 stderr.txt -rw-r--r-- 1 root root 107 Aug 8 16:05 wrapper_26015_x86_64-pc-linux-gnu -rw-r--r-- 1 root root 27 Aug 8 17:41 wrapper_checkpoint.txt running start_atlas return value is 0 Parent exit 0 child process exit 0 17:41:24 (61937): run_atlas exited; CPU time 28936.692000 17:41:24 (61937): called boinc_finish(0) </stderr_txt> ]]>
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