Name | PkPNDmHh6FvnShfckohDCDFpABFKDmABFKDmqreXDmABFKDmYfNbLo_0 |
Workunit | 1915223 |
Created | 8 Aug 2019, 23:08:27 UTC |
Sent | 9 Aug 2019, 9:35:44 UTC |
Report deadline | 16 Aug 2019, 9:35:44 UTC |
Received | 9 Aug 2019, 13:34:47 UTC |
Server state | Over |
Outcome | Success |
Client state | Done |
Exit status | 0 (0x00000000) |
Computer ID | 4132 |
Run time | 3 hours 53 min 43 sec |
CPU time | 23 hours 48 min 36 sec |
Validate state | Valid |
Credit | 923.74 |
Device peak FLOPS | 28.46 GFLOPS |
Application version | ATLAS Simulation v0.70 (native_mt) x86_64-pc-linux-gnu |
Peak working set size | 1.85 GB |
Peak swap size | 20.68 GB |
Peak disk usage | 728.23 MB |
<core_client_version>7.6.31</core_client_version> <![CDATA[ <stderr_txt> 03:37:37 (51074): wrapper (7.7.26015): starting 03:37:37 (51074): wrapper: running run_atlas (--nthreads 8) singularity image is /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sys.argv = ['run_atlas', '--nthreads', '8'] THREADS=8 Checking for CVMFS CVMFS is installed OS:cat: /etc/redhat-release: No such file or directory This is not SLC6, need to run with Singularity.... Checking Singularity... Singularity is installed, version 2.4.2-dist Testing the function of Singularity... Checking singularity with cmd:singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 hostname Singularity Works... copy /var/lib/boinc2/slots/12/shared/RTE.tar.gz copy /var/lib/boinc2/slots/12/shared/ATLAS.root_0 copy /var/lib/boinc2/slots/12/shared/input.tar.gz copy /var/lib/boinc2/slots/12/shared/start_atlas.sh export ATHENA_PROC_NUMBER=8;start atlas job with grep: pandaJobData.out: No such file or directory cmd = singularity exec --pwd /var/lib/boinc2/slots/12 -B /cvmfs,/var /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sh start_atlas.sh > runtime_log 2> runtime_log.err running cmd return value is 0 Moving ./HITS.18722261._010806.pool.root.1 to shared/HITS.pool.root.1 *****************The last 100 lines of the pilot log****************** 2019-08-09 13:30:57,681 | INFO | retrieve | pilot.util.auxiliary | make_job_report | 2019-08-09 13:30:57,682 | INFO | retrieve | pilot.util.auxiliary | make_job_report | job summary report 2019-08-09 13:30:57,682 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-08-09 13:30:57,682 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4441066713 2019-08-09 13:30:57,682 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18722261 2019-08-09 13:30:57,682 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none) 2019-08-09 13:30:57,682 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE 2019-08-09 13:30:57,683 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished 2019-08-09 13:30:57,683 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0 2019-08-09 13:30:57,683 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0 2019-08-09 13:30:57,683 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag: 2019-08-09 13:30:57,683 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0 2019-08-09 13:30:57,683 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK 2019-08-09 13:30:57,683 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 86596 s 2019-08-09 13:30:57,683 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 200 2019-08-09 13:30:57,684 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0 2019-08-09 13:30:57,684 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 26119 2019-08-09 13:30:57,684 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: 26119 2019-08-09 13:30:57,684 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 8 2019-08-09 13:30:57,684 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False 2019-08-09 13:30:57,684 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-08-09 13:30:57,684 | INFO | retrieve | pilot.util.auxiliary | make_job_report | 2019-08-09 13:30:57,684 | INFO | retrieve | pilot.control.job | has_job_completed | job 4441066713 has completed 2019-08-09 13:30:57,685 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called 2019-08-09 13:30:57,693 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /var/lib/boinc2/slots/12/PanDA_Pilot-4441066713 2019-08-09 13:30:58,698 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [26119] 2019-08-09 13:30:58,698 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 26119 2019-08-09 13:30:58,698 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes 2019-08-09 13:30:59,706 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes 2019-08-09 13:30:59,706 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=26119 2019-08-09 13:30:59,980 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [26119] (in reverse order) 2019-08-09 13:31:00,250 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s) 2019-08-09 13:31:00,250 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs 2019-08-09 13:31:00,250 | INFO | retrieve | pilot.control.job | retrieve | ready for new job 2019-08-09 13:31:00,250 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging No handlers could be found for logger "pilot.util.mpi" 2019-08-09 13:31:00,760 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1 2019-08-09 13:31:10,810 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1 2019-08-09 13:31:10,810 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /var/lib/boinc2/slots/12 2019-08-09 13:31:10,861 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (258557870080 B) 2019-08-09 13:31:10,861 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job 2019-08-09 13:31:10,861 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished 2019-08-09 13:31:10,948 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished 2019-08-09 13:31:10,972 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished 2019-08-09 13:31:11,038 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 14 threads 2019-08-09 13:31:11,039 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140338007357184)>, <ExcThread(job, started 140337791084288)>, <ExcThread(copytool_in, started 140337200731904)>, <ExcThread(validate_post, started 140337242695424)>, <ExcThread(job_monitor, started 140337225910016)>, <ExcThread(payload, started 140337757513472)>, <ExcThread(failed_post, started 140337217517312)>, <ExcThread(data, started 140337774298880)>, <ExcThread(monitor, started 140337234302720)>, <ExcThread(queue_monitor, started 140336647108352)>, <ExcThread(validate, started 140337782691584)>, <ExcThread(queue_monitoring, started 140337251088128)>, <ExcThread(copytool_out, started 140337765906176)>, <ExcThread(execute_payloads, started 140337209124608)>] 2019-08-09 13:31:11,059 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration 2019-08-09 13:31:11,119 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished 2019-08-09 13:31:11,166 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended 2019-08-09 13:31:11,270 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished 2019-08-09 13:31:11,446 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 11 threads 2019-08-09 13:31:11,446 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140338007357184)>, <ExcThread(job, started 140337791084288)>, <ExcThread(validate_post, started 140337242695424)>, <ExcThread(job_monitor, started 140337225910016)>, <ExcThread(payload, started 140337757513472)>, <ExcThread(failed_post, started 140337217517312)>, <ExcThread(data, started 140337774298880)>, <ExcThread(queue_monitor, started 140336647108352)>, <ExcThread(validate, started 140337782691584)>, <ExcThread(queue_monitoring, started 140337251088128)>, <ExcThread(copytool_out, started 140337765906176)>] 2019-08-09 13:31:11,514 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set 2019-08-09 13:31:11,514 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished 2019-08-09 13:31:11,578 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished 2019-08-09 13:31:11,652 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set 2019-08-09 13:31:11,652 | DEBUG | data | pilot.control.data | control | [data] control thread has finished 2019-08-09 13:31:11,656 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 8 threads 2019-08-09 13:31:11,656 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140338007357184)>, <ExcThread(job, started 140337791084288)>, <ExcThread(validate_post, started 140337242695424)>, <ExcThread(job_monitor, started 140337225910016)>, <ExcThread(failed_post, started 140337217517312)>, <ExcThread(queue_monitor, started 140336647108352)>, <ExcThread(queue_monitoring, started 140337251088128)>, <ExcThread(copytool_out, started 140337765906176)>] 2019-08-09 13:31:11,794 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set 2019-08-09 13:31:11,798 | DEBUG | job | pilot.control.job | control | [job] control thread has finished 2019-08-09 13:31:11,802 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished 2019-08-09 13:31:11,810 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 6 threads 2019-08-09 13:31:11,810 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140338007357184)>, <ExcThread(job_monitor, started 140337225910016)>, <ExcThread(failed_post, started 140337217517312)>, <ExcThread(queue_monitor, started 140336647108352)>, <ExcThread(queue_monitoring, started 140337251088128)>, <ExcThread(copytool_out, started 140337765906176)>] 2019-08-09 13:31:12,204 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration 2019-08-09 13:31:12,205 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished 2019-08-09 13:31:12,222 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 5 threads 2019-08-09 13:31:12,222 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140338007357184)>, <ExcThread(job_monitor, started 140337225910016)>, <ExcThread(failed_post, started 140337217517312)>, <ExcThread(queue_monitoring, started 140337251088128)>, <ExcThread(copytool_out, started 140337765906176)>] 2019-08-09 13:31:12,230 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished 2019-08-09 13:31:12,302 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration 2019-08-09 13:31:12,323 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 4 threads 2019-08-09 13:31:12,324 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140338007357184)>, <ExcThread(job_monitor, started 140337225910016)>, <ExcThread(queue_monitoring, started 140337251088128)>, <ExcThread(copytool_out, started 140337765906176)>] 2019-08-09 13:31:13,306 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished 2019-08-09 13:31:13,351 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 3 threads 2019-08-09 13:31:13,351 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140338007357184)>, <ExcThread(job_monitor, started 140337225910016)>, <ExcThread(queue_monitoring, started 140337251088128)>] 2019-08-09 13:31:14,062 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished 2019-08-09 13:31:14,070 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 2 threads 2019-08-09 13:31:14,070 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140338007357184)>, <ExcThread(job_monitor, started 140337225910016)>] 2019-08-09 13:31:16,910 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 61 s) 2019-08-09 13:31:16,910 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished 2019-08-09 13:31:16,954 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0) 2019-08-09 13:31:16,958 | INFO | MainThread | root | wrap_up | traces error code: 0 2019-08-09 13:31:16,958 | INFO | MainThread | root | wrap_up | pilot has finished 2019-08-09 13:31:17 UTC [wrapper] ==== pilot stdout END ==== 2019-08-09 13:31:17 UTC [wrapper] ==== wrapper stdout RESUME ==== 2019-08-09 13:31:17 UTC [wrapper] Pilot exit status: 0 2019-08-09 13:31:17 UTC [wrapper] STATUSCODE: 0 2019-08-09 13:31:17 UTC [wrapper] apfmon messages muted ---- find pandaID.out ---- total 48 -rw-rw-r-- 1 320 320 11357 Jul 25 08:38 LICENSE drwxrwxr-x 14 320 320 4096 Aug 9 03:39 pilot -rwxrwxr-x 1 320 320 20463 Jul 25 08:38 pilot.py -rw-r--r-- 1 320 320 8 Aug 7 05:02 PILOTVERSION -rw-rw-r-- 1 320 320 2251 Jul 25 08:38 README.md -rw-rw-r-- 1 320 320 221 Jul 25 08:38 TODO.md 2019-08-09 13:31:17 UTC [wrapper] Test setup, not cleaning 2019-08-09 13:31:17 UTC [wrapper] ==== wrapper stdout END ==== 2019-08-09 13:31:17 UTC [wrapper] ==== wrapper stderr END ==== ***************diag file************ runtimeenvironments=APPS/HEP/ATLAS-SITE; Processors=1 WallTime=14009.04s KernelTime=1148.08s UserTime=85716.50s CPUUsage=620% MaxResidentMemory=1978592kB AverageResidentMemory=0kB AverageTotalMemory=0kB AverageUnsharedMemory=0kB AverageUnsharedStack=0kB AverageSharedMemory=0kB PageSize=4096B MajorPageFaults=607871 MinorPageFaults=23436411 Swaps=0 ForcedSwitches=4139972 WaitSwitches=9349988 Inputs=132357088 Outputs=897384 SocketReceived=0 SocketSent=0 Signals=0 nodename=wHewitt@d8 exitcode=0 ******************************WorkDir*********************** total 274572 drwxrwx--x 7 root root 4096 Aug 9 07:31 . drwxrwxrwx 35 root root 4096 Aug 9 02:25 .. -rw------- 1 root root 7409227 Aug 9 03:40 agis_ddmendpoints.json -rw------- 1 root root 4507313 Aug 9 03:40 agis_schedconf.cvmfs.json drwx------ 2 root root 4096 Aug 9 03:37 .alrb drwxr-xr-x 3 root root 4096 Aug 9 03:37 APPS drwxr-xr-x 2 root root 4096 Aug 9 03:39 .arc -rw------- 1 root root 544 Aug 9 03:38 .asetup -rw------- 1 root root 829 Aug 9 03:43 .asetup.save -rw-r--r-- 1 root root 0 Aug 9 03:37 boinc_lockfile -rw-r--r-- 1 root root 8192 Aug 9 07:31 boinc_mmap_file -rw-r--r-- 1 root root 538 Aug 9 07:09 boinc_task_state.xml -rw-r--r-- 1 root root 266479572 Aug 9 03:37 EVNT.18605752._000211.pool.root.1 -rw------- 1 root root 83915 Aug 9 07:30 heartbeat.json -rw-r--r-- 1 root root 8514 Aug 9 03:37 init_data.xml -rw-r--r-- 1 root root 262346 Aug 9 03:37 input.tar.gz -rw-r--r-- 1 root root 112 Aug 9 03:37 job.xml -rw------- 1 root root 759501 Aug 9 07:31 log.18722261._010806.job.log.1 -rw------- 1 root root 1201722 Aug 9 07:30 log.18722261._010806.job.log.tgz.1 -rw------- 1 root root 391 Aug 9 07:31 output.list -rw------- 1 4871 1028 2921 Aug 8 17:08 pandaJobData.out drwxr-xr-x 3 320 320 4096 Aug 7 05:02 pilot2 -rw-r--r-- 1 root root 253018 Aug 8 16:23 pilot2.tar.gz -rw------- 1 root root 10173 Aug 9 07:31 pilotlog.txt -rw------- 1 root root 497 Aug 9 07:31 PkPNDmHh6FvnShfckohDCDFpABFKDmABFKDmqreXDmABFKDmYfNbLo.diag -rw-r--r-- 1 root root 4468 Aug 8 17:07 queuedata.json -rw-r--r-- 1 root root 815 Aug 9 03:37 RTE.tar.gz -rwxr-xr-x 1 root root 8648 Aug 9 03:37 run_atlas -rwx------ 1 4871 1028 15232 Aug 8 17:08 runpilot2-wrapper.sh -rw-r--r-- 1 root root 692 Aug 9 07:31 runtime_log -rw-r--r-- 1 root root 6871 Aug 9 07:31 runtime_log.err drwxrwx--x 2 root root 4096 Aug 9 07:31 shared -rw-r--r-- 1 root root 8688 Aug 9 03:37 start_atlas.sh -rw-r--r-- 1 root root 18165 Aug 9 07:31 stderr.txt -rw-r--r-- 1 root root 107 Aug 9 03:37 wrapper_26015_x86_64-pc-linux-gnu -rw-r--r-- 1 root root 28 Aug 9 07:31 wrapper_checkpoint.txt running start_atlas return value is 0 Parent exit 0 child process exit 0 07:31:18 (51074): run_atlas exited; CPU time 85716.768000 07:31:18 (51074): called boinc_finish(0) </stderr_txt> ]]>
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