Name | LgSMDmK86FvnShfckohDCDFpABFKDmABFKDmUVfXDmABFKDmZg6Nsn_0 |
Workunit | 1915227 |
Created | 8 Aug 2019, 23:36:27 UTC |
Sent | 9 Aug 2019, 1:44:21 UTC |
Report deadline | 16 Aug 2019, 1:44:21 UTC |
Received | 9 Aug 2019, 11:33:41 UTC |
Server state | Over |
Outcome | Success |
Client state | Done |
Exit status | 0 (0x00000000) |
Computer ID | 3911 |
Run time | 2 hours 6 min 10 sec |
CPU time | 7 hours 42 min 9 sec |
Validate state | Valid |
Credit | 223.58 |
Device peak FLOPS | 12.76 GFLOPS |
Application version | ATLAS Simulation v0.70 (native_mt) x86_64-pc-linux-gnu |
Peak working set size | 1.80 GB |
Peak swap size | 3.72 GB |
Peak disk usage | 852.59 MB |
<core_client_version>7.7.0</core_client_version> <![CDATA[ <stderr_txt> 10:27:11 (4249): wrapper (7.7.26015): starting 10:27:11 (4249): wrapper: running run_atlas (--nthreads 4) singularity image is /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sys.argv = ['run_atlas', '--nthreads', '4'] THREADS=4 Checking for CVMFS CVMFS is installed OS:CentOS Linux release 7.6.1810 (Core) This is not SLC6, need to run with Singularity.... Checking Singularity... Singularity is installed, version singularity version 3.2.1-1 Testing the function of Singularity... Checking singularity with cmd:singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 hostname Singularity Works... copy /home/grid/slots/0/shared/ATLAS.root_0 copy /home/grid/slots/0/shared/input.tar.gz copy /home/grid/slots/0/shared/RTE.tar.gz copy /home/grid/slots/0/shared/start_atlas.sh export ATHENA_PROC_NUMBER=4;start atlas job with grep: pandaJobData.out: No such file or directory cmd = singularity exec --pwd /home/grid/slots/0 -B /cvmfs,/home /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sh start_atlas.sh > runtime_log 2> runtime_log.err running cmd return value is 0 Moving ./HITS.18604991._041529.pool.root.1 to shared/HITS.pool.root.1 *****************The last 100 lines of the pilot log****************** 2019-08-09 10:32:52,394 | INFO | retrieve | pilot.util.auxiliary | make_job_report | job summary report 2019-08-09 10:32:52,394 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-08-09 10:32:52,394 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4441067668 2019-08-09 10:32:52,394 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18604991 2019-08-09 10:32:52,394 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none) 2019-08-09 10:32:52,394 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE 2019-08-09 10:32:52,395 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished 2019-08-09 10:32:52,395 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0 2019-08-09 10:32:52,395 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0 2019-08-09 10:32:52,395 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag: 2019-08-09 10:32:52,395 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0 2019-08-09 10:32:52,395 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK 2019-08-09 10:32:52,395 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 27836 s 2019-08-09 10:32:52,395 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 200 2019-08-09 10:32:52,395 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0 2019-08-09 10:32:52,395 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 10930 2019-08-09 10:32:52,395 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: 10930 2019-08-09 10:32:52,395 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 4 2019-08-09 10:32:52,395 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False 2019-08-09 10:32:52,395 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-08-09 10:32:52,395 | INFO | retrieve | pilot.util.auxiliary | make_job_report | 2019-08-09 10:32:52,396 | INFO | retrieve | pilot.control.job | has_job_completed | job 4441067668 has completed 2019-08-09 10:32:52,396 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called 2019-08-09 10:32:52,403 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /home/grid/slots/0/PanDA_Pilot-4441067668 2019-08-09 10:32:53,408 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [10930] 2019-08-09 10:32:53,408 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 10930 2019-08-09 10:32:53,408 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes 2019-08-09 10:32:54,414 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes 2019-08-09 10:32:54,414 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=10930 2019-08-09 10:32:54,459 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [10930] (in reverse order) 2019-08-09 10:32:54,497 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s) 2019-08-09 10:32:54,498 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs 2019-08-09 10:32:54,498 | INFO | retrieve | pilot.control.job | retrieve | ready for new job 2019-08-09 10:32:54,498 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging No handlers could be found for logger "pilot.util.mpi" 2019-08-09 10:32:55,008 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1 2019-08-09 10:33:04,471 | INFO | monitor | pilot.control.monitor | control | 7519 s have passed since pilot start 2019-08-09 10:33:05,023 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1 2019-08-09 10:33:05,024 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /home/grid/slots/0 2019-08-09 10:33:05,064 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (36128686080 B) 2019-08-09 10:33:05,064 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job 2019-08-09 10:33:05,065 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished 2019-08-09 10:33:05,196 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set 2019-08-09 10:33:05,196 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished 2019-08-09 10:33:05,236 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished 2019-08-09 10:33:05,307 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 14 threads 2019-08-09 10:33:05,307 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139983014385408)>, <ExcThread(job, started 139982798112512)>, <ExcThread(validate_post, started 139982152910592)>, <ExcThread(job_monitor, started 139982144517888)>, <ExcThread(execute_payloads, started 139981641217792)>, <ExcThread(copytool_out, started 139982689781504)>, <ExcThread(queue_monitor, started 139982136125184)>, <ExcThread(failed_post, started 139982127732480)>, <ExcThread(copytool_in, started 139982169696000)>, <ExcThread(validate, started 139982714959616)>, <ExcThread(monitor, started 139982161303296)>, <ExcThread(queue_monitoring, started 139982672996096)>, <ExcThread(validate_pre, started 139982664603392)>, <ExcThread(data, started 139982706566912)>] 2019-08-09 10:33:05,477 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended 2019-08-09 10:33:05,499 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished 2019-08-09 10:33:05,600 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished 2019-08-09 10:33:05,609 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 11 threads 2019-08-09 10:33:05,609 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139983014385408)>, <ExcThread(job, started 139982798112512)>, <ExcThread(job_monitor, started 139982144517888)>, <ExcThread(execute_payloads, started 139981641217792)>, <ExcThread(copytool_out, started 139982689781504)>, <ExcThread(queue_monitor, started 139982136125184)>, <ExcThread(copytool_in, started 139982169696000)>, <ExcThread(validate, started 139982714959616)>, <ExcThread(queue_monitoring, started 139982672996096)>, <ExcThread(validate_pre, started 139982664603392)>, <ExcThread(data, started 139982706566912)>] 2019-08-09 10:33:05,951 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set 2019-08-09 10:33:05,952 | DEBUG | data | pilot.control.data | control | [data] control thread has finished 2019-08-09 10:33:05,992 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished 2019-08-09 10:33:06,084 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set 2019-08-09 10:33:06,085 | DEBUG | job | pilot.control.job | control | [job] control thread has finished 2019-08-09 10:33:06,112 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 8 threads 2019-08-09 10:33:06,112 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139983014385408)>, <ExcThread(job_monitor, started 139982144517888)>, <ExcThread(execute_payloads, started 139981641217792)>, <ExcThread(copytool_out, started 139982689781504)>, <ExcThread(queue_monitor, started 139982136125184)>, <ExcThread(copytool_in, started 139982169696000)>, <ExcThread(validate, started 139982714959616)>, <ExcThread(queue_monitoring, started 139982672996096)>] 2019-08-09 10:33:06,127 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished 2019-08-09 10:33:06,213 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 7 threads 2019-08-09 10:33:06,213 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139983014385408)>, <ExcThread(job_monitor, started 139982144517888)>, <ExcThread(execute_payloads, started 139981641217792)>, <ExcThread(copytool_out, started 139982689781504)>, <ExcThread(queue_monitor, started 139982136125184)>, <ExcThread(copytool_in, started 139982169696000)>, <ExcThread(queue_monitoring, started 139982672996096)>] 2019-08-09 10:33:06,228 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished 2019-08-09 10:33:06,230 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished 2019-08-09 10:33:06,265 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration 2019-08-09 10:33:06,314 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 5 threads 2019-08-09 10:33:06,314 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139983014385408)>, <ExcThread(job_monitor, started 139982144517888)>, <ExcThread(copytool_out, started 139982689781504)>, <ExcThread(queue_monitor, started 139982136125184)>, <ExcThread(queue_monitoring, started 139982672996096)>] 2019-08-09 10:33:06,891 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration 2019-08-09 10:33:06,891 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished 2019-08-09 10:33:06,918 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 4 threads 2019-08-09 10:33:06,919 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139983014385408)>, <ExcThread(job_monitor, started 139982144517888)>, <ExcThread(copytool_out, started 139982689781504)>, <ExcThread(queue_monitoring, started 139982672996096)>] 2019-08-09 10:33:06,937 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration 2019-08-09 10:33:07,266 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished 2019-08-09 10:33:07,324 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 3 threads 2019-08-09 10:33:07,324 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139983014385408)>, <ExcThread(job_monitor, started 139982144517888)>, <ExcThread(queue_monitoring, started 139982672996096)>] 2019-08-09 10:33:09,938 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished 2019-08-09 10:33:09,945 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 2 threads 2019-08-09 10:33:09,945 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139983014385408)>, <ExcThread(job_monitor, started 139982144517888)>] 2019-08-09 10:33:18,416 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 62 s) 2019-08-09 10:33:18,416 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished 2019-08-09 10:33:18,417 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0) 2019-08-09 10:33:18,417 | INFO | MainThread | root | wrap_up | traces error code: 0 2019-08-09 10:33:18,417 | INFO | MainThread | root | wrap_up | pilot has finished 2019-08-09 10:33:18 UTC [wrapper] ==== pilot stdout END ==== 2019-08-09 10:33:18 UTC [wrapper] ==== wrapper stdout RESUME ==== 2019-08-09 10:33:18 UTC [wrapper] Pilot exit status: 0 2019-08-09 10:33:18 UTC [wrapper] STATUSCODE: 0 2019-08-09 10:33:18 UTC [wrapper] apfmon messages muted ---- find pandaID.out ---- total 44 -rw-------. 1 grid grid 11357 Jul 25 16:38 LICENSE drwx------. 14 grid grid 216 Aug 9 10:27 pilot -rwx------. 1 grid grid 20463 Jul 25 16:38 pilot.py -rw-------. 1 grid grid 8 Aug 7 13:02 PILOTVERSION -rw-------. 1 grid grid 2251 Jul 25 16:38 README.md -rw-------. 1 grid grid 221 Jul 25 16:38 TODO.md 2019-08-09 10:33:18 UTC [wrapper] Test setup, not cleaning 2019-08-09 10:33:18 UTC [wrapper] ==== wrapper stdout END ==== 2019-08-09 10:33:18 UTC [wrapper] ==== wrapper stderr END ==== ***************diag file************ runtimeenvironments=APPS/HEP/ATLAS-SITE; Processors=1 WallTime=7548.91s KernelTime=222.71s UserTime=27729.15s CPUUsage=370% MaxResidentMemory=1944808kB AverageResidentMemory=0kB AverageTotalMemory=0kB AverageUnsharedMemory=0kB AverageUnsharedStack=0kB AverageSharedMemory=0kB PageSize=4096B MajorPageFaults=297148 MinorPageFaults=13590739 Swaps=0 ForcedSwitches=3253129 WaitSwitches=6046984 Inputs=72310544 Outputs=543184 SocketReceived=0 SocketSent=0 Signals=0 nodename=David_Cameron@dcameron04.cern.ch exitcode=0 ******************************WorkDir*********************** total 381004 drwxrwx--x. 7 grid grid 4096 Aug 9 12:33 . drwxr-x--x. 3 grid grid 15 Aug 8 09:08 .. -rw-------. 1 grid grid 7409227 Aug 9 10:27 agis_ddmendpoints.json -rw-------. 1 grid grid 4507449 Aug 9 10:27 agis_schedconf.cvmfs.json drwx------. 2 grid grid 6 Aug 9 10:27 .alrb drwxr-xr-x. 3 grid grid 17 Aug 9 10:27 APPS drwxr-xr-x. 2 grid grid 6 Aug 9 10:27 .arc -rw-------. 1 grid grid 538 Aug 9 10:27 .asetup -rw-------. 1 grid grid 826 Aug 9 10:28 .asetup.save -rw-r--r--. 1 grid grid 0 Aug 9 10:27 boinc_lockfile -rw-r--r--. 1 grid grid 8192 Aug 9 12:33 boinc_mmap_file -rw-r--r--. 1 grid grid 536 Aug 9 12:26 boinc_task_state.xml -rw-r--r--. 1 grid grid 376207177 Aug 9 10:27 EVNT.17323818._001043.pool.root.1 -rw-------. 1 grid grid 62814 Aug 9 12:32 heartbeat.json -rw-r--r--. 1 grid grid 5857 Aug 9 10:27 init_data.xml -rw-r--r--. 1 grid grid 262362 Aug 9 10:27 input.tar.gz -rw-r--r--. 1 grid grid 112 Aug 9 10:27 job.xml -rw-------. 1 grid grid 516 Aug 9 12:33 LgSMDmK86FvnShfckohDCDFpABFKDmABFKDmUVfXDmABFKDmZg6Nsn.diag -rw-------. 1 grid grid 454400 Aug 9 12:33 log.18604991._041529.job.log.1 -rw-------. 1 grid grid 821200 Aug 9 12:32 log.18604991._041529.job.log.tgz.1 -rw-------. 1 grid grid 391 Aug 9 12:33 output.list -rw-------. 1 grid grid 2873 Aug 9 01:36 pandaJobData.out drwx------. 3 grid grid 174 Aug 7 13:02 pilot2 -rw-r--r--. 1 grid grid 253018 Aug 9 01:26 pilot2.tar.gz -rw-------. 1 grid grid 10404 Aug 9 12:33 pilotlog.txt -rw-r--r--. 1 grid grid 4468 Aug 9 01:35 queuedata.json -rw-r--r--. 1 grid grid 815 Aug 9 10:27 RTE.tar.gz -rwxr-xr-x. 1 grid grid 8648 Aug 9 10:27 run_atlas -rwx------. 1 grid grid 15232 Aug 9 01:36 runpilot2-wrapper.sh -rw-r--r--. 1 grid grid 692 Aug 9 12:33 runtime_log -rw-r--r--. 1 grid grid 6807 Aug 9 12:33 runtime_log.err drwxrwx--x. 2 grid grid 131 Aug 9 12:33 shared -rw-r--r--. 1 grid grid 8688 Aug 9 10:27 start_atlas.sh -rw-r--r--. 1 grid grid 18276 Aug 9 12:33 stderr.txt -rw-r--r--. 1 grid grid 107 Aug 9 10:27 wrapper_26015_x86_64-pc-linux-gnu -rw-r--r--. 1 grid grid 27 Aug 9 12:33 wrapper_checkpoint.txt running start_atlas return value is 0 Parent exit 0 child process exit 0 12:33:19 (4249): run_atlas exited; CPU time 27729.589890 12:33:19 (4249): called boinc_finish(0) </stderr_txt> ]]>
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