| Name | LcWNDmT6xFvnShfckohDCDFpABFKDmABFKDmpWGXDmABFKDmW0pFIn_3 |
| Workunit | 1914993 |
| Created | 9 Aug 2019, 5:26:41 UTC |
| Sent | 9 Aug 2019, 23:25:14 UTC |
| Report deadline | 16 Aug 2019, 23:25:14 UTC |
| Received | 10 Aug 2019, 9:01:09 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 3911 |
| Run time | 1 hours 55 min 50 sec |
| CPU time | 7 hours 1 min 21 sec |
| Validate state | Valid |
| Credit | 205.27 |
| Device peak FLOPS | 12.76 GFLOPS |
| Application version | ATLAS Simulation v0.70 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.81 GB |
| Peak swap size | 2.54 GB |
| Peak disk usage | 841.52 MB |
Stderr output
<core_client_version>7.7.0</core_client_version> <![CDATA[ <stderr_txt> 08:04:58 (4767): wrapper (7.7.26015): starting 08:04:58 (4767): wrapper: running run_atlas (--nthreads 4) singularity image is /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sys.argv = ['run_atlas', '--nthreads', '4'] THREADS=4 Checking for CVMFS CVMFS is installed OS:CentOS Linux release 7.6.1810 (Core) This is not SLC6, need to run with Singularity.... Checking Singularity... Singularity is not installed, using version from CVMFS Testing the function of Singularity... Checking singularity with cmd:/cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 hostname Singularity Works... copy /home/grid/slots/0/shared/ATLAS.root_0 copy /home/grid/slots/0/shared/input.tar.gz copy /home/grid/slots/0/shared/RTE.tar.gz copy /home/grid/slots/0/shared/start_atlas.sh export ATHENA_PROC_NUMBER=4;start atlas job with grep: pandaJobData.out: No such file or directory cmd = /cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec --pwd /home/grid/slots/0 -B /cvmfs,/home /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sh start_atlas.sh > runtime_log 2> runtime_log.err running cmd return value is 0 Moving ./HITS.18604976._041081.pool.root.1 to shared/HITS.pool.root.1 *****************The last 100 lines of the pilot log****************** 2019-08-10 07:59:57,407 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished 2019-08-10 07:59:57,408 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0 2019-08-10 07:59:57,408 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0 2019-08-10 07:59:57,408 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag: 2019-08-10 07:59:57,408 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0 2019-08-10 07:59:57,408 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK 2019-08-10 07:59:57,408 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 25397 s 2019-08-10 07:59:57,408 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 200 2019-08-10 07:59:57,408 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0 2019-08-10 07:59:57,408 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 11439 2019-08-10 07:59:57,408 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: 11439 2019-08-10 07:59:57,408 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 4 2019-08-10 07:59:57,408 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False 2019-08-10 07:59:57,408 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-08-10 07:59:57,408 | INFO | retrieve | pilot.util.auxiliary | make_job_report | 2019-08-10 07:59:57,408 | INFO | retrieve | pilot.control.job | has_job_completed | job 4437383278 has completed 2019-08-10 07:59:57,409 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called 2019-08-10 07:59:57,416 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /home/grid/slots/0/PanDA_Pilot-4437383278 2019-08-10 07:59:58,421 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [11439] 2019-08-10 07:59:58,422 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 11439 2019-08-10 07:59:58,422 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes 2019-08-10 07:59:59,427 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes 2019-08-10 07:59:59,427 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=11439 2019-08-10 07:59:59,487 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [11439] (in reverse order) 2019-08-10 07:59:59,531 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s) 2019-08-10 07:59:59,532 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs 2019-08-10 07:59:59,532 | INFO | retrieve | pilot.control.job | retrieve | ready for new job 2019-08-10 07:59:59,532 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging No handlers could be found for logger "pilot.util.mpi" 2019-08-10 08:00:00,043 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1 2019-08-10 08:00:10,091 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1 2019-08-10 08:00:10,091 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /home/grid/slots/0 2019-08-10 08:00:10,131 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (34523316224 B) 2019-08-10 08:00:10,132 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job 2019-08-10 08:00:10,132 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished 2019-08-10 08:00:10,144 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished 2019-08-10 08:00:10,159 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended 2019-08-10 08:00:10,188 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set 2019-08-10 08:00:10,189 | DEBUG | data | pilot.control.data | control | [data] control thread has finished 2019-08-10 08:00:10,303 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished 2019-08-10 08:00:10,317 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set 2019-08-10 08:00:10,317 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished 2019-08-10 08:00:10,319 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 11 threads 2019-08-10 08:00:10,320 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140249425237760)>, <ExcThread(job, started 140249208964864)>, <ExcThread(validate_pre, started 140248658994944)>, <ExcThread(execute_payloads, started 140248063407872)>, <ExcThread(queue_monitor, started 140248633816832)>, <ExcThread(queue_monitoring, started 140248650602240)>, <ExcThread(failed_post, started 140248617031424)>, <ExcThread(copytool_in, started 140248642209536)>, <ExcThread(job_monitor, started 140248667387648)>, <ExcThread(create_data_payload, started 140249183786752)>, <ExcThread(copytool_out, started 140249158608640)>] 2019-08-10 08:00:10,386 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set 2019-08-10 08:00:10,386 | DEBUG | job | pilot.control.job | control | [job] control thread has finished 2019-08-10 08:00:10,421 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 10 threads 2019-08-10 08:00:10,421 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140249425237760)>, <ExcThread(validate_pre, started 140248658994944)>, <ExcThread(execute_payloads, started 140248063407872)>, <ExcThread(queue_monitor, started 140248633816832)>, <ExcThread(queue_monitoring, started 140248650602240)>, <ExcThread(failed_post, started 140248617031424)>, <ExcThread(copytool_in, started 140248642209536)>, <ExcThread(job_monitor, started 140248667387648)>, <ExcThread(create_data_payload, started 140249183786752)>, <ExcThread(copytool_out, started 140249158608640)>] 2019-08-10 08:00:10,725 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished 2019-08-10 08:00:10,824 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 9 threads 2019-08-10 08:00:10,824 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140249425237760)>, <ExcThread(validate_pre, started 140248658994944)>, <ExcThread(execute_payloads, started 140248063407872)>, <ExcThread(queue_monitor, started 140248633816832)>, <ExcThread(queue_monitoring, started 140248650602240)>, <ExcThread(failed_post, started 140248617031424)>, <ExcThread(copytool_in, started 140248642209536)>, <ExcThread(job_monitor, started 140248667387648)>, <ExcThread(copytool_out, started 140249158608640)>] 2019-08-10 08:00:10,870 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished 2019-08-10 08:00:10,925 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 8 threads 2019-08-10 08:00:10,925 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140249425237760)>, <ExcThread(validate_pre, started 140248658994944)>, <ExcThread(execute_payloads, started 140248063407872)>, <ExcThread(queue_monitor, started 140248633816832)>, <ExcThread(queue_monitoring, started 140248650602240)>, <ExcThread(copytool_in, started 140248642209536)>, <ExcThread(job_monitor, started 140248667387648)>, <ExcThread(copytool_out, started 140249158608640)>] 2019-08-10 08:00:11,031 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished 2019-08-10 08:00:11,127 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 7 threads 2019-08-10 08:00:11,127 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140249425237760)>, <ExcThread(validate_pre, started 140248658994944)>, <ExcThread(queue_monitor, started 140248633816832)>, <ExcThread(queue_monitoring, started 140248650602240)>, <ExcThread(copytool_in, started 140248642209536)>, <ExcThread(job_monitor, started 140248667387648)>, <ExcThread(copytool_out, started 140249158608640)>] 2019-08-10 08:00:11,132 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration 2019-08-10 08:00:11,267 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished 2019-08-10 08:00:11,329 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 6 threads 2019-08-10 08:00:11,329 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140249425237760)>, <ExcThread(queue_monitor, started 140248633816832)>, <ExcThread(queue_monitoring, started 140248650602240)>, <ExcThread(copytool_in, started 140248642209536)>, <ExcThread(job_monitor, started 140248667387648)>, <ExcThread(copytool_out, started 140249158608640)>] 2019-08-10 08:00:11,367 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished 2019-08-10 08:00:11,430 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 5 threads 2019-08-10 08:00:11,430 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140249425237760)>, <ExcThread(queue_monitor, started 140248633816832)>, <ExcThread(queue_monitoring, started 140248650602240)>, <ExcThread(job_monitor, started 140248667387648)>, <ExcThread(copytool_out, started 140249158608640)>] 2019-08-10 08:00:11,893 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration 2019-08-10 08:00:11,893 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished 2019-08-10 08:00:11,907 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration 2019-08-10 08:00:11,933 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 4 threads 2019-08-10 08:00:11,934 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140249425237760)>, <ExcThread(queue_monitoring, started 140248650602240)>, <ExcThread(job_monitor, started 140248667387648)>, <ExcThread(copytool_out, started 140249158608640)>] 2019-08-10 08:00:12,133 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished 2019-08-10 08:00:12,135 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 3 threads 2019-08-10 08:00:12,135 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140249425237760)>, <ExcThread(queue_monitoring, started 140248650602240)>, <ExcThread(job_monitor, started 140248667387648)>] 2019-08-10 08:00:14,909 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished 2019-08-10 08:00:14,958 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 2 threads 2019-08-10 08:00:14,959 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140249425237760)>, <ExcThread(job_monitor, started 140248667387648)>] 2019-08-10 08:00:45,891 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 61 s) 2019-08-10 08:00:45,891 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished 2019-08-10 08:00:45,892 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 1 threads 2019-08-10 08:00:45,892 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140249425237760)>] 2019-08-10 08:00:45,892 | DEBUG | MainThread | pilot.workflow.generic | run | aborting since there is[are] 0 daemon thread[s] which can be ignored 2019-08-10 08:00:45,892 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0) 2019-08-10 08:00:45,893 | INFO | MainThread | root | wrap_up | traces error code: 0 2019-08-10 08:00:45,893 | INFO | MainThread | root | wrap_up | pilot has finished 2019-08-10 08:00:46 UTC [wrapper] ==== pilot stdout END ==== 2019-08-10 08:00:46 UTC [wrapper] ==== wrapper stdout RESUME ==== 2019-08-10 08:00:46 UTC [wrapper] Pilot exit status: 0 2019-08-10 08:00:46 UTC [wrapper] STATUSCODE: 0 2019-08-10 08:00:46 UTC [wrapper] apfmon messages muted ---- find pandaID.out ---- total 44 -rw-------. 1 grid grid 11357 Jul 25 16:38 LICENSE drwx------. 14 grid grid 216 Aug 10 08:05 pilot -rwx------. 1 grid grid 20463 Jul 25 16:38 pilot.py -rw-------. 1 grid grid 8 Aug 7 13:02 PILOTVERSION -rw-------. 1 grid grid 2251 Jul 25 16:38 README.md -rw-------. 1 grid grid 221 Jul 25 16:38 TODO.md 2019-08-10 08:00:46 UTC [wrapper] Test setup, not cleaning 2019-08-10 08:00:46 UTC [wrapper] ==== wrapper stdout END ==== 2019-08-10 08:00:46 UTC [wrapper] ==== wrapper stderr END ==== ***************diag file************ runtimeenvironments=APPS/HEP/ATLAS-SITE; Processors=1 WallTime=6944.39s KernelTime=233.30s UserTime=25281.39s CPUUsage=367% MaxResidentMemory=1904836kB AverageResidentMemory=0kB AverageTotalMemory=0kB AverageUnsharedMemory=0kB AverageUnsharedStack=0kB AverageSharedMemory=0kB PageSize=4096B MajorPageFaults=287421 MinorPageFaults=13198964 Swaps=0 ForcedSwitches=2980992 WaitSwitches=5656973 Inputs=69635752 Outputs=507352 SocketReceived=0 SocketSent=0 Signals=0 nodename=David_Cameron@dcameron04.cern.ch exitcode=0 ******************************WorkDir*********************** total 381236 drwxrwx--x. 7 grid grid 4096 Aug 10 10:00 . drwxr-x--x. 3 grid grid 15 Aug 8 09:08 .. -rw-------. 1 grid grid 7408903 Aug 10 08:05 agis_ddmendpoints.json -rw-------. 1 grid grid 4507141 Aug 10 08:05 agis_schedconf.cvmfs.json drwx------. 2 grid grid 6 Aug 10 08:05 .alrb drwxr-xr-x. 3 grid grid 17 Aug 10 08:05 APPS drwxr-xr-x. 2 grid grid 6 Aug 10 08:05 .arc -rw-------. 1 grid grid 538 Aug 10 08:05 .asetup -rw-------. 1 grid grid 826 Aug 10 08:05 .asetup.save -rw-rw-r--. 1 grid grid 0 Aug 10 08:04 boinc_lockfile -rw-rw-r--. 1 grid grid 8192 Aug 10 10:00 boinc_mmap_file -rw-rw-r--. 1 grid grid 536 Aug 10 09:54 boinc_task_state.xml -rw-rw-r--. 1 grid grid 376449988 Aug 10 08:05 EVNT.17323813._000820.pool.root.1 -rw-------. 1 grid grid 69881 Aug 10 09:59 heartbeat.json -rw-rw-r--. 1 grid grid 5862 Aug 10 08:04 init_data.xml -rw-rw-r--. 1 grid grid 262346 Aug 10 08:05 input.tar.gz -rw-rw-r--. 1 grid grid 112 Aug 10 08:04 job.xml -rw-------. 1 grid grid 516 Aug 10 10:00 LcWNDmT6xFvnShfckohDCDFpABFKDmABFKDmpWGXDmABFKDmW0pFIn.diag -rw-------. 1 grid grid 438884 Aug 10 10:00 log.18604976._041081.job.log.1 -rw-------. 1 grid grid 822738 Aug 10 09:59 log.18604976._041081.job.log.tgz.1 -rw-------. 1 grid grid 391 Aug 10 10:00 output.list -rw-------. 1 grid grid 2873 Aug 8 15:57 pandaJobData.out drwx------. 3 grid grid 174 Aug 7 13:02 pilot2 -rw-r--r--. 1 grid grid 253018 Aug 8 15:35 pilot2.tar.gz -rw-------. 1 grid grid 11977 Aug 10 10:00 pilotlog.txt -rw-r--r--. 1 grid grid 4468 Aug 8 15:55 queuedata.json -rw-rw-r--. 1 grid grid 815 Aug 10 08:05 RTE.tar.gz -rwxr-xr-x. 1 grid grid 8648 Aug 10 08:04 run_atlas -rwx------. 1 grid grid 15232 Aug 8 15:57 runpilot2-wrapper.sh -rw-rw-r--. 1 grid grid 692 Aug 10 10:00 runtime_log -rw-rw-r--. 1 grid grid 6807 Aug 10 10:00 runtime_log.err drwxrwx--x. 2 grid grid 131 Aug 10 10:00 shared -rw-rw-r--. 1 grid grid 8688 Aug 10 08:05 start_atlas.sh -rw-rw-r--. 1 grid grid 19103 Aug 10 10:00 stderr.txt -rw-rw-r--. 1 grid grid 107 Aug 10 08:04 wrapper_26015_x86_64-pc-linux-gnu -rw-rw-r--. 1 grid grid 27 Aug 10 10:00 wrapper_checkpoint.txt running start_atlas return value is 0 Parent exit 0 child process exit 0 10:00:46 (4767): run_atlas exited; CPU time 25281.805923 10:00:46 (4767): called boinc_finish(0) </stderr_txt> ]]>
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