Name | inRLDmXVGGvnShfckohDCDFpABFKDmABFKDmzpvXDmABFKDm2C1GYn_0 |
Workunit | 1915495 |
Created | 9 Aug 2019, 9:37:21 UTC |
Sent | 9 Aug 2019, 11:33:41 UTC |
Report deadline | 16 Aug 2019, 11:33:41 UTC |
Received | 9 Aug 2019, 21:45:04 UTC |
Server state | Over |
Outcome | Success |
Client state | Done |
Exit status | 0 (0x00000000) |
Computer ID | 3911 |
Run time | 2 hours 17 min 25 sec |
CPU time | 8 hours 23 min 51 sec |
Validate state | Valid |
Credit | 243.53 |
Device peak FLOPS | 12.76 GFLOPS |
Application version | ATLAS Simulation v0.70 (native_mt) x86_64-pc-linux-gnu |
Peak working set size | 1.80 GB |
Peak swap size | 2.55 GB |
Peak disk usage | 612.53 MB |
<core_client_version>7.7.0</core_client_version> <![CDATA[ <stderr_txt> 20:27:15 (2185): wrapper (7.7.26015): starting 20:27:15 (2185): wrapper: running run_atlas (--nthreads 4) singularity image is /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sys.argv = ['run_atlas', '--nthreads', '4'] THREADS=4 Checking for CVMFS CVMFS is installed OS:CentOS Linux release 7.6.1810 (Core) This is not SLC6, need to run with Singularity.... Checking Singularity... Singularity is not installed, using version from CVMFS Testing the function of Singularity... Checking singularity with cmd:/cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 hostname Singularity Works... copy /home/grid/slots/0/shared/ATLAS.root_0 copy /home/grid/slots/0/shared/input.tar.gz copy /home/grid/slots/0/shared/RTE.tar.gz copy /home/grid/slots/0/shared/start_atlas.sh export ATHENA_PROC_NUMBER=4;start atlas job with grep: pandaJobData.out: No such file or directory cmd = /cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec --pwd /home/grid/slots/0 -B /cvmfs,/home /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sh start_atlas.sh > runtime_log 2> runtime_log.err running cmd return value is 0 Moving ./HITS.18722183._010175.pool.root.1 to shared/HITS.pool.root.1 *****************The last 100 lines of the pilot log****************** 2019-08-09 20:43:50,924 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18722183 2019-08-09 20:43:50,924 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none) 2019-08-09 20:43:50,924 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE 2019-08-09 20:43:50,924 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished 2019-08-09 20:43:50,924 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0 2019-08-09 20:43:50,924 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0 2019-08-09 20:43:50,924 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag: 2019-08-09 20:43:50,924 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0 2019-08-09 20:43:50,924 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK 2019-08-09 20:43:50,924 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 30363 s 2019-08-09 20:43:50,924 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 200 2019-08-09 20:43:50,924 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0 2019-08-09 20:43:50,925 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 8886 2019-08-09 20:43:50,925 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: 8886 2019-08-09 20:43:50,925 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 4 2019-08-09 20:43:50,925 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False 2019-08-09 20:43:50,925 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-08-09 20:43:50,925 | INFO | retrieve | pilot.util.auxiliary | make_job_report | 2019-08-09 20:43:50,925 | INFO | retrieve | pilot.control.job | has_job_completed | job 4441899398 has completed 2019-08-09 20:43:50,925 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called 2019-08-09 20:43:50,934 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /home/grid/slots/0/PanDA_Pilot-4441899398 2019-08-09 20:43:51,940 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [8886] 2019-08-09 20:43:51,940 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 8886 2019-08-09 20:43:51,940 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes 2019-08-09 20:43:52,942 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes 2019-08-09 20:43:52,943 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=8886 2019-08-09 20:43:52,996 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [8886] (in reverse order) 2019-08-09 20:43:53,038 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s) 2019-08-09 20:43:53,038 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs 2019-08-09 20:43:53,038 | INFO | retrieve | pilot.control.job | retrieve | ready for new job 2019-08-09 20:43:53,039 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging No handlers could be found for logger "pilot.util.mpi" 2019-08-09 20:43:53,546 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1 2019-08-09 20:44:03,594 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1 2019-08-09 20:44:03,594 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /home/grid/slots/0 2019-08-09 20:44:03,632 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (35884367872 B) 2019-08-09 20:44:03,633 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job 2019-08-09 20:44:03,633 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished 2019-08-09 20:44:03,683 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set 2019-08-09 20:44:03,683 | DEBUG | data | pilot.control.data | control | [data] control thread has finished 2019-08-09 20:44:03,745 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished 2019-08-09 20:44:03,783 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set 2019-08-09 20:44:03,783 | DEBUG | job | pilot.control.job | control | [job] control thread has finished 2019-08-09 20:44:03,895 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 13 threads 2019-08-09 20:44:03,895 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140455382570752)>, <ExcThread(copytool_in, started 140454599313152)>, <ExcThread(validate, started 140455157905152)>, <ExcThread(job_monitor, started 140454590920448)>, <ExcThread(failed_post, started 140454582527744)>, <ExcThread(queue_monitoring, started 140454607705856)>, <ExcThread(queue_monitor, started 140454574135040)>, <ExcThread(monitor, started 140455115941632)>, <ExcThread(copytool_out, started 140455124334336)>, <ExcThread(create_data_payload, started 140455132727040)>, <ExcThread(execute_payloads, started 140454020511488)>, <ExcThread(payload, started 140455141119744)>, <ExcThread(validate_pre, started 140455107548928)>] 2019-08-09 20:44:04,151 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished 2019-08-09 20:44:04,152 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished 2019-08-09 20:44:04,197 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 11 threads 2019-08-09 20:44:04,197 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140455382570752)>, <ExcThread(copytool_in, started 140454599313152)>, <ExcThread(job_monitor, started 140454590920448)>, <ExcThread(failed_post, started 140454582527744)>, <ExcThread(queue_monitoring, started 140454607705856)>, <ExcThread(queue_monitor, started 140454574135040)>, <ExcThread(monitor, started 140455115941632)>, <ExcThread(copytool_out, started 140455124334336)>, <ExcThread(execute_payloads, started 140454020511488)>, <ExcThread(payload, started 140455141119744)>, <ExcThread(validate_pre, started 140455107548928)>] 2019-08-09 20:44:04,215 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set 2019-08-09 20:44:04,216 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished 2019-08-09 20:44:04,398 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 10 threads 2019-08-09 20:44:04,399 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140455382570752)>, <ExcThread(copytool_in, started 140454599313152)>, <ExcThread(job_monitor, started 140454590920448)>, <ExcThread(failed_post, started 140454582527744)>, <ExcThread(queue_monitoring, started 140454607705856)>, <ExcThread(queue_monitor, started 140454574135040)>, <ExcThread(monitor, started 140455115941632)>, <ExcThread(copytool_out, started 140455124334336)>, <ExcThread(execute_payloads, started 140454020511488)>, <ExcThread(validate_pre, started 140455107548928)>] 2019-08-09 20:44:04,455 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended 2019-08-09 20:44:04,499 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 9 threads 2019-08-09 20:44:04,500 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140455382570752)>, <ExcThread(copytool_in, started 140454599313152)>, <ExcThread(job_monitor, started 140454590920448)>, <ExcThread(failed_post, started 140454582527744)>, <ExcThread(queue_monitoring, started 140454607705856)>, <ExcThread(queue_monitor, started 140454574135040)>, <ExcThread(copytool_out, started 140455124334336)>, <ExcThread(execute_payloads, started 140454020511488)>, <ExcThread(validate_pre, started 140455107548928)>] 2019-08-09 20:44:04,563 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration 2019-08-09 20:44:04,577 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished 2019-08-09 20:44:04,600 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 8 threads 2019-08-09 20:44:04,601 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140455382570752)>, <ExcThread(copytool_in, started 140454599313152)>, <ExcThread(job_monitor, started 140454590920448)>, <ExcThread(failed_post, started 140454582527744)>, <ExcThread(queue_monitoring, started 140454607705856)>, <ExcThread(queue_monitor, started 140454574135040)>, <ExcThread(copytool_out, started 140455124334336)>, <ExcThread(validate_pre, started 140455107548928)>] 2019-08-09 20:44:04,646 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished 2019-08-09 20:44:04,677 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration 2019-08-09 20:44:04,701 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 7 threads 2019-08-09 20:44:04,702 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140455382570752)>, <ExcThread(job_monitor, started 140454590920448)>, <ExcThread(failed_post, started 140454582527744)>, <ExcThread(queue_monitoring, started 140454607705856)>, <ExcThread(queue_monitor, started 140454574135040)>, <ExcThread(copytool_out, started 140455124334336)>, <ExcThread(validate_pre, started 140455107548928)>] 2019-08-09 20:44:04,791 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished 2019-08-09 20:44:04,802 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 6 threads 2019-08-09 20:44:04,803 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140455382570752)>, <ExcThread(job_monitor, started 140454590920448)>, <ExcThread(failed_post, started 140454582527744)>, <ExcThread(queue_monitoring, started 140454607705856)>, <ExcThread(queue_monitor, started 140454574135040)>, <ExcThread(copytool_out, started 140455124334336)>] 2019-08-09 20:44:05,078 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration 2019-08-09 20:44:05,078 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished 2019-08-09 20:44:05,091 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished 2019-08-09 20:44:05,105 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 4 threads 2019-08-09 20:44:05,105 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140455382570752)>, <ExcThread(job_monitor, started 140454590920448)>, <ExcThread(queue_monitoring, started 140454607705856)>, <ExcThread(copytool_out, started 140455124334336)>] 2019-08-09 20:44:05,678 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished 2019-08-09 20:44:05,710 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 3 threads 2019-08-09 20:44:05,710 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140455382570752)>, <ExcThread(job_monitor, started 140454590920448)>, <ExcThread(queue_monitoring, started 140454607705856)>] 2019-08-09 20:44:07,565 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished 2019-08-09 20:44:07,624 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 2 threads 2019-08-09 20:44:07,624 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140455382570752)>, <ExcThread(job_monitor, started 140454590920448)>] 2019-08-09 20:44:38,103 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 62 s) 2019-08-09 20:44:38,103 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished 2019-08-09 20:44:38,151 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0) 2019-08-09 20:44:38,152 | INFO | MainThread | root | wrap_up | traces error code: 0 2019-08-09 20:44:38,152 | INFO | MainThread | root | wrap_up | pilot has finished 2019-08-09 20:44:38 UTC [wrapper] ==== pilot stdout END ==== 2019-08-09 20:44:38 UTC [wrapper] ==== wrapper stdout RESUME ==== 2019-08-09 20:44:38 UTC [wrapper] Pilot exit status: 0 2019-08-09 20:44:38 UTC [wrapper] STATUSCODE: 0 2019-08-09 20:44:38 UTC [wrapper] apfmon messages muted ---- find pandaID.out ---- total 44 -rw-------. 1 grid grid 11357 Jul 25 16:38 LICENSE drwx------. 14 grid grid 216 Aug 9 20:27 pilot -rwx------. 1 grid grid 20463 Jul 25 16:38 pilot.py -rw-------. 1 grid grid 8 Aug 7 13:02 PILOTVERSION -rw-------. 1 grid grid 2251 Jul 25 16:38 README.md -rw-------. 1 grid grid 221 Jul 25 16:38 TODO.md 2019-08-09 20:44:38 UTC [wrapper] Test setup, not cleaning 2019-08-09 20:44:38 UTC [wrapper] ==== wrapper stdout END ==== 2019-08-09 20:44:38 UTC [wrapper] ==== wrapper stderr END ==== ***************diag file************ runtimeenvironments=APPS/HEP/ATLAS-SITE; Processors=1 WallTime=8239.75s KernelTime=264.08s UserTime=30231.60s CPUUsage=370% MaxResidentMemory=1945328kB AverageResidentMemory=0kB AverageTotalMemory=0kB AverageUnsharedMemory=0kB AverageUnsharedStack=0kB AverageSharedMemory=0kB PageSize=4096B MajorPageFaults=310637 MinorPageFaults=13996746 Swaps=0 ForcedSwitches=3546757 WaitSwitches=6172617 Inputs=75672616 Outputs=612008 SocketReceived=0 SocketSent=0 Signals=0 nodename=David_Cameron@dcameron04.cern.ch exitcode=0 ******************************WorkDir*********************** total 251520 drwxrwx--x. 7 grid grid 4096 Aug 9 22:44 . drwxr-x--x. 3 grid grid 15 Aug 8 09:08 .. -rw-------. 1 grid grid 7408903 Aug 9 20:27 agis_ddmendpoints.json -rw-------. 1 grid grid 4507181 Aug 9 20:27 agis_schedconf.cvmfs.json drwx------. 2 grid grid 6 Aug 9 20:27 .alrb drwxr-xr-x. 3 grid grid 17 Aug 9 20:27 APPS drwxr-xr-x. 2 grid grid 6 Aug 9 20:27 .arc -rw-------. 1 grid grid 538 Aug 9 20:27 .asetup -rw-------. 1 grid grid 826 Aug 9 20:28 .asetup.save -rw-rw-r--. 1 grid grid 0 Aug 9 20:27 boinc_lockfile -rw-rw-r--. 1 grid grid 8192 Aug 9 22:44 boinc_mmap_file -rw-rw-r--. 1 grid grid 536 Aug 9 22:38 boinc_task_state.xml -rw-rw-r--. 1 grid grid 243510492 Aug 9 20:27 EVNT.18605745._000227.pool.root.1 -rw-------. 1 grid grid 99527 Aug 9 22:43 heartbeat.json -rw-rw-r--. 1 grid grid 5862 Aug 9 20:27 init_data.xml -rw-rw-r--. 1 grid grid 262343 Aug 9 20:27 input.tar.gz -rw-------. 1 grid grid 516 Aug 9 22:44 inRLDmXVGGvnShfckohDCDFpABFKDmABFKDmzpvXDmABFKDm2C1GYn.diag -rw-rw-r--. 1 grid grid 112 Aug 9 20:27 job.xml -rw-------. 1 grid grid 510207 Aug 9 22:44 log.18722183._010175.job.log.1 -rw-------. 1 grid grid 834871 Aug 9 22:43 log.18722183._010175.job.log.tgz.1 -rw-------. 1 grid grid 391 Aug 9 22:44 output.list -rw-------. 1 grid grid 2920 Aug 9 11:36 pandaJobData.out drwx------. 3 grid grid 174 Aug 7 13:02 pilot2 -rw-r--r--. 1 grid grid 253018 Aug 9 11:26 pilot2.tar.gz -rw-------. 1 grid grid 11835 Aug 9 22:44 pilotlog.txt -rw-r--r--. 1 grid grid 4468 Aug 9 11:36 queuedata.json -rw-rw-r--. 1 grid grid 815 Aug 9 20:27 RTE.tar.gz -rwxr-xr-x. 1 grid grid 8648 Aug 9 20:27 run_atlas -rwx------. 1 grid grid 15232 Aug 9 11:36 runpilot2-wrapper.sh -rw-rw-r--. 1 grid grid 692 Aug 9 22:44 runtime_log -rw-rw-r--. 1 grid grid 6807 Aug 9 22:44 runtime_log.err drwxrwx--x. 2 grid grid 131 Aug 9 22:44 shared -rw-rw-r--. 1 grid grid 8688 Aug 9 20:27 start_atlas.sh -rw-rw-r--. 1 grid grid 19383 Aug 9 22:44 stderr.txt -rw-rw-r--. 1 grid grid 107 Aug 9 20:27 wrapper_26015_x86_64-pc-linux-gnu -rw-rw-r--. 1 grid grid 27 Aug 9 22:44 wrapper_checkpoint.txt running start_atlas return value is 0 Parent exit 0 child process exit 0 22:44:39 (2185): run_atlas exited; CPU time 30231.990133 22:44:39 (2185): called boinc_finish(0) </stderr_txt> ]]>
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