Name | jvaLDmhE9FvnShfckohDCDFpABFKDmABFKDmT2jXDmABFKDmUgy6Xo_2 |
Workunit | 1915277 |
Created | 9 Aug 2019, 13:41:53 UTC |
Sent | 9 Aug 2019, 15:04:08 UTC |
Report deadline | 16 Aug 2019, 15:04:08 UTC |
Received | 10 Aug 2019, 3:50:10 UTC |
Server state | Over |
Outcome | Success |
Client state | Done |
Exit status | 0 (0x00000000) |
Computer ID | 3911 |
Run time | 4 hours 24 min 49 sec |
CPU time | 16 hours 41 min 3 sec |
Validate state | Valid |
Credit | 469.27 |
Device peak FLOPS | 12.76 GFLOPS |
Application version | ATLAS Simulation v0.70 (native_mt) x86_64-pc-linux-gnu |
Peak working set size | 1.80 GB |
Peak swap size | 2.57 GB |
Peak disk usage | 762.96 MB |
<core_client_version>7.7.0</core_client_version> <![CDATA[ <stderr_txt> 00:24:59 (19225): wrapper (7.7.26015): starting 00:24:59 (19225): wrapper: running run_atlas (--nthreads 4) singularity image is /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sys.argv = ['run_atlas', '--nthreads', '4'] THREADS=4 Checking for CVMFS CVMFS is installed OS:CentOS Linux release 7.6.1810 (Core) This is not SLC6, need to run with Singularity.... Checking Singularity... Singularity is not installed, using version from CVMFS Testing the function of Singularity... Checking singularity with cmd:/cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 hostname Singularity Works... copy /home/grid/slots/0/shared/ATLAS.root_0 copy /home/grid/slots/0/shared/input.tar.gz copy /home/grid/slots/0/shared/RTE.tar.gz copy /home/grid/slots/0/shared/start_atlas.sh export ATHENA_PROC_NUMBER=4;start atlas job with grep: pandaJobData.out: No such file or directory cmd = /cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec --pwd /home/grid/slots/0 -B /cvmfs,/home /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sh start_atlas.sh > runtime_log 2> runtime_log.err running cmd return value is 0 Moving ./HITS.18722298._011638.pool.root.1 to shared/HITS.pool.root.1 *****************The last 100 lines of the pilot log****************** 2019-08-10 02:48:44,368 | INFO | retrieve | pilot.util.auxiliary | make_job_report | 2019-08-10 02:48:44,368 | INFO | retrieve | pilot.util.auxiliary | make_job_report | job summary report 2019-08-10 02:48:44,369 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-08-10 02:48:44,369 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4441192980 2019-08-10 02:48:44,369 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18722298 2019-08-10 02:48:44,369 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none) 2019-08-10 02:48:44,369 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE 2019-08-10 02:48:44,369 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished 2019-08-10 02:48:44,369 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0 2019-08-10 02:48:44,369 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0 2019-08-10 02:48:44,369 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag: 2019-08-10 02:48:44,369 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0 2019-08-10 02:48:44,369 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK 2019-08-10 02:48:44,370 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 60320 s 2019-08-10 02:48:44,370 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 200 2019-08-10 02:48:44,370 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0 2019-08-10 02:48:44,370 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 25899 2019-08-10 02:48:44,370 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: 25899 2019-08-10 02:48:44,370 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 4 2019-08-10 02:48:44,370 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False 2019-08-10 02:48:44,370 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-08-10 02:48:44,370 | INFO | retrieve | pilot.util.auxiliary | make_job_report | 2019-08-10 02:48:44,370 | INFO | retrieve | pilot.control.job | has_job_completed | job 4441192980 has completed 2019-08-10 02:48:44,370 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called 2019-08-10 02:48:44,383 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /home/grid/slots/0/PanDA_Pilot-4441192980 2019-08-10 02:48:45,384 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [25899] 2019-08-10 02:48:45,384 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 25899 2019-08-10 02:48:45,384 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes 2019-08-10 02:48:46,387 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes 2019-08-10 02:48:46,388 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=25899 2019-08-10 02:48:46,443 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [25899] (in reverse order) 2019-08-10 02:48:46,494 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s) 2019-08-10 02:48:46,494 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs 2019-08-10 02:48:46,494 | INFO | retrieve | pilot.control.job | retrieve | ready for new job 2019-08-10 02:48:46,494 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging No handlers could be found for logger "pilot.util.mpi" 2019-08-10 02:48:47,006 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1 2019-08-10 02:48:57,025 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1 2019-08-10 02:48:57,025 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /home/grid/slots/0 2019-08-10 02:48:57,072 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (34951135232 B) 2019-08-10 02:48:57,073 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job 2019-08-10 02:48:57,073 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished 2019-08-10 02:48:57,089 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration 2019-08-10 02:48:57,102 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration 2019-08-10 02:48:57,136 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished 2019-08-10 02:48:57,163 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set 2019-08-10 02:48:57,163 | DEBUG | data | pilot.control.data | control | [data] control thread has finished 2019-08-10 02:48:57,251 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended 2019-08-10 02:48:57,277 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished 2019-08-10 02:48:57,358 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 12 threads 2019-08-10 02:48:57,358 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140110531438336)>, <ExcThread(job, started 140110315173632)>, <ExcThread(validate_pre, started 140110054012672)>, <ExcThread(create_data_payload, started 140110062405376)>, <ExcThread(queue_monitoring, started 140110070798080)>, <ExcThread(validate_post, started 140109542319872)>, <ExcThread(payload, started 140110079190784)>, <ExcThread(copytool_in, started 140110037227264)>, <ExcThread(copytool_out, started 140110087583488)>, <ExcThread(job_monitor, started 140109525534464)>, <ExcThread(queue_monitor, started 140109508749056)>, <ExcThread(validate, started 140110306780928)>] 2019-08-10 02:48:57,507 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished 2019-08-10 02:48:57,536 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set 2019-08-10 02:48:57,537 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished 2019-08-10 02:48:57,559 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 10 threads 2019-08-10 02:48:57,560 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140110531438336)>, <ExcThread(job, started 140110315173632)>, <ExcThread(create_data_payload, started 140110062405376)>, <ExcThread(queue_monitoring, started 140110070798080)>, <ExcThread(validate_post, started 140109542319872)>, <ExcThread(copytool_in, started 140110037227264)>, <ExcThread(copytool_out, started 140110087583488)>, <ExcThread(job_monitor, started 140109525534464)>, <ExcThread(queue_monitor, started 140109508749056)>, <ExcThread(validate, started 140110306780928)>] 2019-08-10 02:48:57,648 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished 2019-08-10 02:48:57,761 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 9 threads 2019-08-10 02:48:57,761 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140110531438336)>, <ExcThread(job, started 140110315173632)>, <ExcThread(create_data_payload, started 140110062405376)>, <ExcThread(queue_monitoring, started 140110070798080)>, <ExcThread(validate_post, started 140109542319872)>, <ExcThread(copytool_out, started 140110087583488)>, <ExcThread(job_monitor, started 140109525534464)>, <ExcThread(queue_monitor, started 140109508749056)>, <ExcThread(validate, started 140110306780928)>] 2019-08-10 02:48:58,059 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set 2019-08-10 02:48:58,060 | DEBUG | job | pilot.control.job | control | [job] control thread has finished 2019-08-10 02:48:58,063 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 8 threads 2019-08-10 02:48:58,063 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140110531438336)>, <ExcThread(create_data_payload, started 140110062405376)>, <ExcThread(queue_monitoring, started 140110070798080)>, <ExcThread(validate_post, started 140109542319872)>, <ExcThread(copytool_out, started 140110087583488)>, <ExcThread(job_monitor, started 140109525534464)>, <ExcThread(queue_monitor, started 140109508749056)>, <ExcThread(validate, started 140110306780928)>] 2019-08-10 02:48:58,090 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished 2019-08-10 02:48:58,109 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished 2019-08-10 02:48:58,122 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished 2019-08-10 02:48:58,164 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 5 threads 2019-08-10 02:48:58,164 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140110531438336)>, <ExcThread(queue_monitoring, started 140110070798080)>, <ExcThread(job_monitor, started 140109525534464)>, <ExcThread(queue_monitor, started 140109508749056)>, <ExcThread(validate, started 140110306780928)>] 2019-08-10 02:48:58,510 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished 2019-08-10 02:48:58,567 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 4 threads 2019-08-10 02:48:58,567 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140110531438336)>, <ExcThread(queue_monitoring, started 140110070798080)>, <ExcThread(job_monitor, started 140109525534464)>, <ExcThread(queue_monitor, started 140109508749056)>] 2019-08-10 02:48:58,684 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration 2019-08-10 02:48:58,684 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished 2019-08-10 02:48:58,769 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 3 threads 2019-08-10 02:48:58,769 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140110531438336)>, <ExcThread(queue_monitoring, started 140110070798080)>, <ExcThread(job_monitor, started 140109525534464)>] 2019-08-10 02:49:00,104 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished 2019-08-10 02:49:00,179 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 2 threads 2019-08-10 02:49:00,180 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140110531438336)>, <ExcThread(job_monitor, started 140109525534464)>] 2019-08-10 02:49:45,606 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 123 s) 2019-08-10 02:49:45,606 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished 2019-08-10 02:49:45,606 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0) 2019-08-10 02:49:45,607 | INFO | MainThread | root | wrap_up | traces error code: 0 2019-08-10 02:49:45,607 | INFO | MainThread | root | wrap_up | pilot has finished 2019-08-10 02:49:45 UTC [wrapper] ==== pilot stdout END ==== 2019-08-10 02:49:45 UTC [wrapper] ==== wrapper stdout RESUME ==== 2019-08-10 02:49:45 UTC [wrapper] Pilot exit status: 0 2019-08-10 02:49:45 UTC [wrapper] STATUSCODE: 0 2019-08-10 02:49:45 UTC [wrapper] apfmon messages muted ---- find pandaID.out ---- total 44 -rw-------. 1 grid grid 11357 Jul 25 16:38 LICENSE drwx------. 14 grid grid 216 Aug 10 00:25 pilot -rwx------. 1 grid grid 20463 Jul 25 16:38 pilot.py -rw-------. 1 grid grid 8 Aug 7 13:02 PILOTVERSION -rw-------. 1 grid grid 2251 Jul 25 16:38 README.md -rw-------. 1 grid grid 221 Jul 25 16:38 TODO.md 2019-08-10 02:49:45 UTC [wrapper] Test setup, not cleaning 2019-08-10 02:49:45 UTC [wrapper] ==== wrapper stdout END ==== 2019-08-10 02:49:46 UTC [wrapper] ==== wrapper stderr END ==== ***************diag file************ runtimeenvironments=APPS/HEP/ATLAS-SITE; Processors=1 WallTime=15876.21s KernelTime=456.15s UserTime=60062.97s CPUUsage=381% MaxResidentMemory=1945260kB AverageResidentMemory=0kB AverageTotalMemory=0kB AverageUnsharedMemory=0kB AverageUnsharedStack=0kB AverageSharedMemory=0kB PageSize=4096B MajorPageFaults=461973 MinorPageFaults=18996464 Swaps=0 ForcedSwitches=7013268 WaitSwitches=9664466 Inputs=111430984 Outputs=957592 SocketReceived=0 SocketSent=0 Signals=0 nodename=David_Cameron@dcameron04.cern.ch exitcode=0 ******************************WorkDir*********************** total 285628 drwxrwx--x. 7 grid grid 4096 Aug 10 04:49 . drwxr-x--x. 3 grid grid 15 Aug 8 09:08 .. -rw-------. 1 grid grid 7408903 Aug 10 00:25 agis_ddmendpoints.json -rw-------. 1 grid grid 4506980 Aug 10 00:25 agis_schedconf.cvmfs.json drwx------. 2 grid grid 6 Aug 10 00:25 .alrb drwxr-xr-x. 3 grid grid 17 Aug 10 00:25 APPS drwxr-xr-x. 2 grid grid 6 Aug 10 00:25 .arc -rw-------. 1 grid grid 538 Aug 10 00:25 .asetup -rw-------. 1 grid grid 826 Aug 10 00:26 .asetup.save -rw-rw-r--. 1 grid grid 0 Aug 10 00:24 boinc_lockfile -rw-rw-r--. 1 grid grid 8192 Aug 10 04:49 boinc_mmap_file -rw-rw-r--. 1 grid grid 537 Aug 10 04:40 boinc_task_state.xml -rw-rw-r--. 1 grid grid 278191090 Aug 10 00:25 EVNT.18605754._000224.pool.root.1 -rw-------. 1 grid grid 80017 Aug 10 04:48 heartbeat.json -rw-rw-r--. 1 grid grid 5862 Aug 10 00:24 init_data.xml -rw-rw-r--. 1 grid grid 262345 Aug 10 00:25 input.tar.gz -rw-rw-r--. 1 grid grid 112 Aug 10 00:24 job.xml -rw-------. 1 grid grid 518 Aug 10 04:49 jvaLDmhE9FvnShfckohDCDFpABFKDmABFKDmT2jXDmABFKDmUgy6Xo.diag -rw-------. 1 grid grid 758253 Aug 10 04:49 log.18722298._011638.job.log.1 -rw-------. 1 grid grid 849218 Aug 10 04:48 log.18722298._011638.job.log.tgz.1 -rw-------. 1 grid grid 391 Aug 10 04:49 output.list -rw-------. 1 grid grid 2914 Aug 9 03:51 pandaJobData.out drwx------. 3 grid grid 174 Aug 7 13:02 pilot2 -rw-r--r--. 1 grid grid 253018 Aug 9 03:26 pilot2.tar.gz -rw-------. 1 grid grid 10212 Aug 10 04:49 pilotlog.txt -rw-r--r--. 1 grid grid 4468 Aug 9 03:50 queuedata.json -rw-rw-r--. 1 grid grid 815 Aug 10 00:25 RTE.tar.gz -rwxr-xr-x. 1 grid grid 8648 Aug 10 00:24 run_atlas -rwx------. 1 grid grid 15232 Aug 9 03:51 runpilot2-wrapper.sh -rw-rw-r--. 1 grid grid 692 Aug 10 04:49 runtime_log -rw-rw-r--. 1 grid grid 6807 Aug 10 04:49 runtime_log.err drwxrwx--x. 2 grid grid 131 Aug 10 04:49 shared -rw-rw-r--. 1 grid grid 8688 Aug 10 00:25 start_atlas.sh -rw-rw-r--. 1 grid grid 18354 Aug 10 04:49 stderr.txt -rw-rw-r--. 1 grid grid 107 Aug 10 00:24 wrapper_26015_x86_64-pc-linux-gnu -rw-rw-r--. 1 grid grid 28 Aug 10 04:49 wrapper_checkpoint.txt running start_atlas return value is 0 Parent exit 0 child process exit 0 04:49:46 (19225): run_atlas exited; CPU time 60063.357570 04:49:46 (19225): called boinc_finish(0) </stderr_txt> ]]>
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