Name | JkAMDmaxNGvnShfckohDCDFpABFKDmABFKDmeh8XDmABFKDmdR37pn_0 |
Workunit | 1915616 |
Created | 9 Aug 2019, 17:34:41 UTC |
Sent | 9 Aug 2019, 19:27:34 UTC |
Report deadline | 16 Aug 2019, 19:27:34 UTC |
Received | 10 Aug 2019, 5:31:21 UTC |
Server state | Over |
Outcome | Success |
Client state | Done |
Exit status | 0 (0x00000000) |
Computer ID | 3911 |
Run time | 1 hours 41 min 8 sec |
CPU time | 6 hours 2 min 44 sec |
Validate state | Valid |
Credit | 179.24 |
Device peak FLOPS | 12.76 GFLOPS |
Application version | ATLAS Simulation v0.70 (native_mt) x86_64-pc-linux-gnu |
Peak working set size | 1.79 GB |
Peak swap size | 3.42 GB |
Peak disk usage | 519.99 MB |
<core_client_version>7.7.0</core_client_version> <![CDATA[ <stderr_txt> 04:49:49 (22356): wrapper (7.7.26015): starting 04:49:49 (22356): wrapper: running run_atlas (--nthreads 4) singularity image is /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sys.argv = ['run_atlas', '--nthreads', '4'] THREADS=4 Checking for CVMFS CVMFS is installed OS:CentOS Linux release 7.6.1810 (Core) This is not SLC6, need to run with Singularity.... Checking Singularity... Singularity is not installed, using version from CVMFS Testing the function of Singularity... Checking singularity with cmd:/cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 hostname Singularity Works... copy /home/grid/slots/0/shared/ATLAS.root_0 copy /home/grid/slots/0/shared/input.tar.gz copy /home/grid/slots/0/shared/RTE.tar.gz copy /home/grid/slots/0/shared/start_atlas.sh export ATHENA_PROC_NUMBER=4;start atlas job with grep: pandaJobData.out: No such file or directory cmd = /cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec --pwd /home/grid/slots/0 -B /cvmfs,/home /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sh start_atlas.sh > runtime_log 2> runtime_log.err running cmd return value is 0 Moving ./HITS.18722355._008709.pool.root.1 to shared/HITS.pool.root.1 *****************The last 100 lines of the pilot log****************** 2019-08-10 04:29:58,687 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18722355 2019-08-10 04:29:58,687 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none) 2019-08-10 04:29:58,687 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE 2019-08-10 04:29:58,687 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished 2019-08-10 04:29:58,687 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0 2019-08-10 04:29:58,687 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0 2019-08-10 04:29:58,687 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag: 2019-08-10 04:29:58,687 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0 2019-08-10 04:29:58,687 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK 2019-08-10 04:29:58,687 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 21868 s 2019-08-10 04:29:58,687 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 200 2019-08-10 04:29:58,688 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0 2019-08-10 04:29:58,688 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 29030 2019-08-10 04:29:58,688 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: 29030 2019-08-10 04:29:58,688 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 4 2019-08-10 04:29:58,688 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False 2019-08-10 04:29:58,688 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-08-10 04:29:58,688 | INFO | retrieve | pilot.util.auxiliary | make_job_report | 2019-08-10 04:29:58,688 | INFO | retrieve | pilot.control.job | has_job_completed | job 4442495520 has completed 2019-08-10 04:29:58,688 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called 2019-08-10 04:29:58,698 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /home/grid/slots/0/PanDA_Pilot-4442495520 2019-08-10 04:29:59,703 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [29030] 2019-08-10 04:29:59,704 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 29030 2019-08-10 04:29:59,704 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes 2019-08-10 04:30:00,709 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes 2019-08-10 04:30:00,709 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=29030 2019-08-10 04:30:00,765 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [29030] (in reverse order) 2019-08-10 04:30:00,806 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s) 2019-08-10 04:30:00,806 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs 2019-08-10 04:30:00,806 | INFO | retrieve | pilot.control.job | retrieve | ready for new job 2019-08-10 04:30:00,806 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging No handlers could be found for logger "pilot.util.mpi" 2019-08-10 04:30:01,317 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1 2019-08-10 04:30:11,352 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1 2019-08-10 04:30:11,352 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /home/grid/slots/0 2019-08-10 04:30:11,393 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (34930163712 B) 2019-08-10 04:30:11,393 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job 2019-08-10 04:30:11,394 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished 2019-08-10 04:30:11,395 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration 2019-08-10 04:30:11,410 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration 2019-08-10 04:30:11,444 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended 2019-08-10 04:30:11,453 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 15 threads 2019-08-10 04:30:11,454 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139985426007808)>, <ExcThread(job, started 139985209734912)>, <ExcThread(create_data_payload, started 139985097307904)>, <ExcThread(copytool_in, started 139984719832832)>, <ExcThread(payload, started 139985105700608)>, <ExcThread(copytool_out, started 139985114093312)>, <ExcThread(validate_post, started 139984703047424)>, <ExcThread(failed_post, started 139984694654720)>, <ExcThread(queue_monitor, started 139984124245760)>, <ExcThread(validate, started 139985130878720)>, <ExcThread(job_monitor, started 139984686262016)>, <ExcThread(queue_monitoring, started 139985088915200)>, <ExcThread(execute_payloads, started 139984677869312)>, <ExcThread(validate_pre, started 139985080522496)>, <ExcThread(data, started 139985122486016)>] 2019-08-10 04:30:11,820 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished 2019-08-10 04:30:11,856 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 14 threads 2019-08-10 04:30:11,856 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139985426007808)>, <ExcThread(job, started 139985209734912)>, <ExcThread(create_data_payload, started 139985097307904)>, <ExcThread(payload, started 139985105700608)>, <ExcThread(copytool_out, started 139985114093312)>, <ExcThread(validate_post, started 139984703047424)>, <ExcThread(failed_post, started 139984694654720)>, <ExcThread(queue_monitor, started 139984124245760)>, <ExcThread(validate, started 139985130878720)>, <ExcThread(job_monitor, started 139984686262016)>, <ExcThread(queue_monitoring, started 139985088915200)>, <ExcThread(execute_payloads, started 139984677869312)>, <ExcThread(validate_pre, started 139985080522496)>, <ExcThread(data, started 139985122486016)>] 2019-08-10 04:30:11,872 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished 2019-08-10 04:30:11,879 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished 2019-08-10 04:30:11,896 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set 2019-08-10 04:30:11,896 | DEBUG | data | pilot.control.data | control | [data] control thread has finished 2019-08-10 04:30:11,991 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set 2019-08-10 04:30:11,992 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished 2019-08-10 04:30:12,058 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 10 threads 2019-08-10 04:30:12,058 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139985426007808)>, <ExcThread(job, started 139985209734912)>, <ExcThread(copytool_out, started 139985114093312)>, <ExcThread(failed_post, started 139984694654720)>, <ExcThread(queue_monitor, started 139984124245760)>, <ExcThread(validate, started 139985130878720)>, <ExcThread(job_monitor, started 139984686262016)>, <ExcThread(queue_monitoring, started 139985088915200)>, <ExcThread(execute_payloads, started 139984677869312)>, <ExcThread(validate_pre, started 139985080522496)>] 2019-08-10 04:30:12,097 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set 2019-08-10 04:30:12,098 | DEBUG | job | pilot.control.job | control | [job] control thread has finished 2019-08-10 04:30:12,159 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 9 threads 2019-08-10 04:30:12,159 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139985426007808)>, <ExcThread(copytool_out, started 139985114093312)>, <ExcThread(failed_post, started 139984694654720)>, <ExcThread(queue_monitor, started 139984124245760)>, <ExcThread(validate, started 139985130878720)>, <ExcThread(job_monitor, started 139984686262016)>, <ExcThread(queue_monitoring, started 139985088915200)>, <ExcThread(execute_payloads, started 139984677869312)>, <ExcThread(validate_pre, started 139985080522496)>] 2019-08-10 04:30:12,269 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished 2019-08-10 04:30:12,361 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 8 threads 2019-08-10 04:30:12,361 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139985426007808)>, <ExcThread(copytool_out, started 139985114093312)>, <ExcThread(queue_monitor, started 139984124245760)>, <ExcThread(validate, started 139985130878720)>, <ExcThread(job_monitor, started 139984686262016)>, <ExcThread(queue_monitoring, started 139985088915200)>, <ExcThread(execute_payloads, started 139984677869312)>, <ExcThread(validate_pre, started 139985080522496)>] 2019-08-10 04:30:12,410 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished 2019-08-10 04:30:12,462 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 7 threads 2019-08-10 04:30:12,462 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139985426007808)>, <ExcThread(queue_monitor, started 139984124245760)>, <ExcThread(validate, started 139985130878720)>, <ExcThread(job_monitor, started 139984686262016)>, <ExcThread(queue_monitoring, started 139985088915200)>, <ExcThread(execute_payloads, started 139984677869312)>, <ExcThread(validate_pre, started 139985080522496)>] 2019-08-10 04:30:12,541 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished 2019-08-10 04:30:12,563 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 6 threads 2019-08-10 04:30:12,563 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139985426007808)>, <ExcThread(queue_monitor, started 139984124245760)>, <ExcThread(validate, started 139985130878720)>, <ExcThread(job_monitor, started 139984686262016)>, <ExcThread(queue_monitoring, started 139985088915200)>, <ExcThread(validate_pre, started 139985080522496)>] 2019-08-10 04:30:12,782 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished 2019-08-10 04:30:12,837 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished 2019-08-10 04:30:12,865 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 4 threads 2019-08-10 04:30:12,865 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139985426007808)>, <ExcThread(queue_monitor, started 139984124245760)>, <ExcThread(job_monitor, started 139984686262016)>, <ExcThread(queue_monitoring, started 139985088915200)>] 2019-08-10 04:30:13,175 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration 2019-08-10 04:30:13,176 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished 2019-08-10 04:30:13,269 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 3 threads 2019-08-10 04:30:13,269 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139985426007808)>, <ExcThread(job_monitor, started 139984686262016)>, <ExcThread(queue_monitoring, started 139985088915200)>] 2019-08-10 04:30:14,397 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished 2019-08-10 04:30:14,477 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 2 threads 2019-08-10 04:30:14,478 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139985426007808)>, <ExcThread(job_monitor, started 139984686262016)>] 2019-08-10 04:30:54,995 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 61 s) 2019-08-10 04:30:54,995 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished 2019-08-10 04:30:55,061 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0) 2019-08-10 04:30:55,061 | INFO | MainThread | root | wrap_up | traces error code: 0 2019-08-10 04:30:55,062 | INFO | MainThread | root | wrap_up | pilot has finished 2019-08-10 04:30:55 UTC [wrapper] ==== pilot stdout END ==== 2019-08-10 04:30:55 UTC [wrapper] ==== wrapper stdout RESUME ==== 2019-08-10 04:30:55 UTC [wrapper] Pilot exit status: 0 2019-08-10 04:30:55 UTC [wrapper] STATUSCODE: 0 2019-08-10 04:30:55 UTC [wrapper] apfmon messages muted ---- find pandaID.out ---- total 44 -rw-------. 1 grid grid 11357 Jul 25 16:38 LICENSE drwx------. 14 grid grid 216 Aug 10 04:50 pilot -rwx------. 1 grid grid 20463 Jul 25 16:38 pilot.py -rw-------. 1 grid grid 8 Aug 7 13:02 PILOTVERSION -rw-------. 1 grid grid 2251 Jul 25 16:38 README.md -rw-------. 1 grid grid 221 Jul 25 16:38 TODO.md 2019-08-10 04:30:55 UTC [wrapper] Test setup, not cleaning 2019-08-10 04:30:55 UTC [wrapper] ==== wrapper stdout END ==== 2019-08-10 04:30:55 UTC [wrapper] ==== wrapper stderr END ==== ***************diag file************ runtimeenvironments=APPS/HEP/ATLAS-SITE; Processors=1 WallTime=6047.37s KernelTime=209.31s UserTime=21764.24s CPUUsage=363% MaxResidentMemory=1944324kB AverageResidentMemory=0kB AverageTotalMemory=0kB AverageUnsharedMemory=0kB AverageUnsharedStack=0kB AverageSharedMemory=0kB PageSize=4096B MajorPageFaults=270383 MinorPageFaults=12776604 Swaps=0 ForcedSwitches=2561401 WaitSwitches=5216619 Inputs=65839680 Outputs=550104 SocketReceived=0 SocketSent=0 Signals=0 nodename=David_Cameron@dcameron04.cern.ch exitcode=0 ******************************WorkDir*********************** total 209208 drwxrwx--x. 7 grid grid 4096 Aug 10 06:30 . drwxr-x--x. 3 grid grid 15 Aug 8 09:08 .. -rw-------. 1 grid grid 7408903 Aug 10 04:50 agis_ddmendpoints.json -rw-------. 1 grid grid 4507141 Aug 10 04:50 agis_schedconf.cvmfs.json drwx------. 2 grid grid 6 Aug 10 04:50 .alrb drwxr-xr-x. 3 grid grid 17 Aug 10 04:50 APPS drwxr-xr-x. 2 grid grid 6 Aug 10 04:50 .arc -rw-------. 1 grid grid 538 Aug 10 04:50 .asetup -rw-------. 1 grid grid 826 Aug 10 04:51 .asetup.save -rw-rw-r--. 1 grid grid 0 Aug 10 04:49 boinc_lockfile -rw-rw-r--. 1 grid grid 8192 Aug 10 06:30 boinc_mmap_file -rw-rw-r--. 1 grid grid 536 Aug 10 06:25 boinc_task_state.xml -rw-rw-r--. 1 grid grid 200344938 Aug 10 04:50 EVNT.18605773._000177.pool.root.1 -rw-------. 1 grid grid 63420 Aug 10 06:29 heartbeat.json -rw-rw-r--. 1 grid grid 5862 Aug 10 04:49 init_data.xml -rw-rw-r--. 1 grid grid 262345 Aug 10 04:50 input.tar.gz -rw-------. 1 grid grid 516 Aug 10 06:30 JkAMDmaxNGvnShfckohDCDFpABFKDmABFKDmeh8XDmABFKDmdR37pn.diag -rw-rw-r--. 1 grid grid 112 Aug 10 04:49 job.xml -rw-------. 1 grid grid 400071 Aug 10 06:30 log.18722355._008709.job.log.1 -rw-------. 1 grid grid 815666 Aug 10 06:29 log.18722355._008709.job.log.tgz.1 -rw-------. 1 grid grid 391 Aug 10 06:30 output.list -rw-------. 1 grid grid 2955 Aug 9 19:34 pandaJobData.out drwx------. 3 grid grid 174 Aug 7 13:02 pilot2 -rw-r--r--. 1 grid grid 253018 Aug 9 19:28 pilot2.tar.gz -rw-------. 1 grid grid 12068 Aug 10 06:30 pilotlog.txt -rw-r--r--. 1 grid grid 4468 Aug 9 19:30 queuedata.json -rw-rw-r--. 1 grid grid 815 Aug 10 04:50 RTE.tar.gz -rwxr-xr-x. 1 grid grid 8648 Aug 10 04:49 run_atlas -rwx------. 1 grid grid 15232 Aug 9 19:34 runpilot2-wrapper.sh -rw-rw-r--. 1 grid grid 692 Aug 10 06:30 runtime_log -rw-rw-r--. 1 grid grid 6807 Aug 10 06:30 runtime_log.err drwxrwx--x. 2 grid grid 131 Aug 10 06:30 shared -rw-rw-r--. 1 grid grid 8688 Aug 10 04:50 start_atlas.sh -rw-rw-r--. 1 grid grid 19624 Aug 10 06:30 stderr.txt -rw-rw-r--. 1 grid grid 107 Aug 10 04:49 wrapper_26015_x86_64-pc-linux-gnu -rw-rw-r--. 1 grid grid 27 Aug 10 06:30 wrapper_checkpoint.txt running start_atlas return value is 0 Parent exit 0 child process exit 0 06:30:55 (22356): run_atlas exited; CPU time 21764.620257 06:30:55 (22356): called boinc_finish(0) </stderr_txt> ]]>
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