Stderr output

<core_client_version>7.15.0</core_client_version>
<![CDATA[
<stderr_txt>
09:53:40 (14919): wrapper (7.7.26015): starting
09:53:40 (14919): wrapper: running run_atlas (--nthreads 2)
singularity image is /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6
sys.argv = ['run_atlas', '--nthreads', '2']
THREADS=2
Checking for CVMFS
CVMFS is installed
OS:cat: /etc/redhat-release: Datei oder Verzeichnis nicht gefunden

This is not SLC6, need to run with Singularity....
Checking Singularity...
Singularity is installed, version singularity version 3.3.0-614.gf0cd4b488
Testing the function of Singularity...
Checking singularity with cmd:singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 hostname
Singularity Works...

copy /home/boinc/boinc1/slots/0/shared/ATLAS.root_0
copy /home/boinc/boinc1/slots/0/shared/RTE.tar.gz
copy /home/boinc/boinc1/slots/0/shared/input.tar.gz
copy /home/boinc/boinc1/slots/0/shared/start_atlas.sh
export ATHENA_PROC_NUMBER=2;start atlas job with grep: pandaJobData.out: Datei oder Verzeichnis nicht gefunden
cmd = singularity exec --pwd /home/boinc/boinc1/slots/0 -B /cvmfs,/home /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sh start_atlas.sh > runtime_log 2> runtime_log.err
running cmd return value is 0
Moving ./HITS.18604991._042817.pool.root.1 to shared/HITS.pool.root.1
*****************The last 100 lines of the pilot log******************
2019-08-10 13:30:17,903 | INFO     | retrieve            | pilot.util.auxiliary             | make_job_report           | --------------------------------------------------
2019-08-10 13:30:17,903 | INFO     | retrieve            | pilot.util.auxiliary             | make_job_report           | PanDA job id: 4442288775
2019-08-10 13:30:17,903 | INFO     | retrieve            | pilot.util.auxiliary             | make_job_report           | task id: 18604991
2019-08-10 13:30:17,903 | INFO     | retrieve            | pilot.util.auxiliary             | make_job_report           | errors: (none)
2019-08-10 13:30:17,903 | INFO     | retrieve            | pilot.util.auxiliary             | make_job_report           | status: LOG_TRANSFER = DONE 
2019-08-10 13:30:17,903 | INFO     | retrieve            | pilot.util.auxiliary             | make_job_report           | pilot state: finished 
2019-08-10 13:30:17,904 | INFO     | retrieve            | pilot.util.auxiliary             | make_job_report           | transexitcode: 0
2019-08-10 13:30:17,904 | INFO     | retrieve            | pilot.util.auxiliary             | make_job_report           | exeerrorcode: 0
2019-08-10 13:30:17,904 | INFO     | retrieve            | pilot.util.auxiliary             | make_job_report           | exeerrordiag: 
2019-08-10 13:30:17,904 | INFO     | retrieve            | pilot.util.auxiliary             | make_job_report           | exitcode: 0
2019-08-10 13:30:17,904 | INFO     | retrieve            | pilot.util.auxiliary             | make_job_report           | exitmsg: OK
2019-08-10 13:30:17,904 | INFO     | retrieve            | pilot.util.auxiliary             | make_job_report           | cpuconsumptiontime: 39448 s
2019-08-10 13:30:17,904 | INFO     | retrieve            | pilot.util.auxiliary             | make_job_report           | nevents: 200
2019-08-10 13:30:17,904 | INFO     | retrieve            | pilot.util.auxiliary             | make_job_report           | neventsw: 0
2019-08-10 13:30:17,904 | INFO     | retrieve            | pilot.util.auxiliary             | make_job_report           | pid: 21522
2019-08-10 13:30:17,905 | INFO     | retrieve            | pilot.util.auxiliary             | make_job_report           | pgrp: 21522
2019-08-10 13:30:17,905 | INFO     | retrieve            | pilot.util.auxiliary             | make_job_report           | corecount: 2
2019-08-10 13:30:17,905 | INFO     | retrieve            | pilot.util.auxiliary             | make_job_report           | event service: False
2019-08-10 13:30:17,905 | INFO     | retrieve            | pilot.util.auxiliary             | make_job_report           | --------------------------------------------------
2019-08-10 13:30:17,905 | INFO     | retrieve            | pilot.util.auxiliary             | make_job_report           | 
2019-08-10 13:30:17,905 | INFO     | retrieve            | pilot.control.job                | has_job_completed         | job 4442288775 has completed
2019-08-10 13:30:17,905 | INFO     | retrieve            | pilot.util.processes             | cleanup                   | overall cleanup function is called
2019-08-10 13:30:17,909 | DEBUG    | retrieve            | pilot.util.processes             | cleanup                   | work directory was removed: /home/boinc/boinc1/slots/0/PanDA_Pilot-4442288775
2019-08-10 13:30:18,914 | INFO     | retrieve            | pilot.info.jobdata               | collect_zombies           | --- collectZombieJob: --- 10, [21522]
2019-08-10 13:30:18,914 | INFO     | retrieve            | pilot.info.jobdata               | collect_zombies           | zombie collector trying to kill pid 21522
2019-08-10 13:30:18,915 | INFO     | retrieve            | pilot.info.jobdata               | collect_zombies           | harmless exception when collecting zombies: [Errno 10] No child processes
2019-08-10 13:30:19,920 | INFO     | retrieve            | pilot.util.processes             | cleanup                   | collected zombie processes
2019-08-10 13:30:19,920 | INFO     | retrieve            | pilot.util.processes             | cleanup                   | will now attempt to kill all subprocesses of pid=21522
2019-08-10 13:30:19,965 | INFO     | retrieve            | pilot.util.processes             | kill_processes            | process IDs to be killed: [21522] (in reverse order)
2019-08-10 13:30:20,000 | WARNING  | retrieve            | pilot.util.processes             | kill_processes            | found no corresponding commands to process id(s)
2019-08-10 13:30:20,000 | INFO     | retrieve            | pilot.util.processes             | kill_orphans              | Do not look for orphan processes in BOINC jobs
2019-08-10 13:30:20,000 | INFO     | retrieve            | pilot.control.job                | retrieve                  | ready for new job
2019-08-10 13:30:20,001 | INFO     | retrieve            | root                             | retrieve                  | pilot has finished for previous job - re-establishing logging
No handlers could be found for logger "pilot.util.mpi"
2019-08-10 13:30:20,507 | DEBUG    | retrieve            | pilot.control.job                | retrieve                  | getjob_requests=1
2019-08-10 13:30:30,550 | DEBUG    | retrieve            | pilot.control.job                | proceed_with_getjob       | proceed_with_getjob called with getjob_requests=1
2019-08-10 13:30:30,550 | DEBUG    | retrieve            | pilot.util.monitoring            | check_local_space         | checking local space on /home/boinc/boinc1/slots/0
2019-08-10 13:30:30,587 | INFO     | retrieve            | pilot.util.monitoring            | check_local_space         | sufficient remaining disk space (880900308992 B)
2019-08-10 13:30:30,587 | WARNING  | retrieve            | pilot.control.job                | proceed_with_getjob       | since timefloor is set to 0, pilot was only allowed to run one job
2019-08-10 13:30:30,588 | DEBUG    | retrieve            | pilot.control.job                | retrieve                  | [job] retrieve thread has finished
2019-08-10 13:30:30,835 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | thread count now at 16 threads
2019-08-10 13:30:30,836 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | enumerate: [<_MainThread(MainThread, started 140410050459392)>, <ExcThread(job, started 140409834186496)>, <ExcThread(monitor, started 140408990463744)>, <ExcThread(validate_pre, started 140409569265408)>, <ExcThread(validate_post, started 140408982071040)>, <ExcThread(job_monitor, started 140409552480000)>, <ExcThread(payload, started 140409577658112)>, <ExcThread(queue_monitor, started 140408973678336)>, <ExcThread(copytool_in, started 140409544087296)>, <ExcThread(queue_monitoring, started 140409586050816)>, <ExcThread(failed_post, started 140408965285632)>, <ExcThread(create_data_payload, started 140409594443520)>, <ExcThread(execute_payloads, started 140408956892928)>, <ExcThread(data, started 140409817401088)>, <ExcThread(validate, started 140409825793792)>, <ExcThread(copytool_out, started 140409809008384)>]
2019-08-10 13:30:30,883 | DEBUG    | create_data_payload | pilot.control.job                | create_data_payload       | [job] create_data_payload thread has finished
2019-08-10 13:30:30,903 | INFO     | monitor             | pilot.control.monitor            | control                   | [monitor] control thread has ended
2019-08-10 13:30:30,944 | DEBUG    | copytool_in         | pilot.control.data               | copytool_in               | [data] copytool_in thread has finished
2019-08-10 13:30:31,042 | INFO     | failed_post         | pilot.control.payload            | failed_post               | [payload] failed_post thread has finished
2019-08-10 13:30:31,075 | WARNING  | queue_monitoring    | pilot.util.common                | should_abort              | data:queue_monitoring:received graceful stop - abort after this iteration
2019-08-10 13:30:31,083 | DEBUG    | job                 | pilot.control.job                | control                   | job control ending since graceful_stop has been set
2019-08-10 13:30:31,083 | DEBUG    | job                 | pilot.control.job                | control                   | [job] control thread has finished
2019-08-10 13:30:31,235 | DEBUG    | data                | pilot.control.data               | control                   | data control ending since graceful_stop has been set
2019-08-10 13:30:31,235 | DEBUG    | data                | pilot.control.data               | control                   | [data] control thread has finished
2019-08-10 13:30:31,238 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | thread count now at 10 threads
2019-08-10 13:30:31,238 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | enumerate: [<_MainThread(MainThread, started 140410050459392)>, <ExcThread(validate_pre, started 140409569265408)>, <ExcThread(validate_post, started 140408982071040)>, <ExcThread(job_monitor, started 140409552480000)>, <ExcThread(payload, started 140409577658112)>, <ExcThread(queue_monitor, started 140408973678336)>, <ExcThread(queue_monitoring, started 140409586050816)>, <ExcThread(execute_payloads, started 140408956892928)>, <ExcThread(validate, started 140409825793792)>, <ExcThread(copytool_out, started 140409809008384)>]
2019-08-10 13:30:31,345 | INFO     | validate_pre        | pilot.control.payload            | validate_pre              | [payload] validate_pre thread has finished
2019-08-10 13:30:31,345 | DEBUG    | validate            | pilot.control.job                | validate                  | [job] validate thread has finished
2019-08-10 13:30:31,440 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | thread count now at 8 threads
2019-08-10 13:30:31,440 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | enumerate: [<_MainThread(MainThread, started 140410050459392)>, <ExcThread(validate_post, started 140408982071040)>, <ExcThread(job_monitor, started 140409552480000)>, <ExcThread(payload, started 140409577658112)>, <ExcThread(queue_monitor, started 140408973678336)>, <ExcThread(queue_monitoring, started 140409586050816)>, <ExcThread(execute_payloads, started 140408956892928)>, <ExcThread(copytool_out, started 140409809008384)>]
2019-08-10 13:30:31,581 | WARNING  | copytool_out        | pilot.util.common                | should_abort              | data:copytool_out:received graceful stop - abort after this iteration
2019-08-10 13:30:31,649 | DEBUG    | payload             | pilot.control.payload            | control                   | payload control ending since graceful_stop has been set
2019-08-10 13:30:31,649 | DEBUG    | payload             | pilot.control.payload            | control                   | [payload] control thread has finished
2019-08-10 13:30:31,742 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | thread count now at 7 threads
2019-08-10 13:30:31,742 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | enumerate: [<_MainThread(MainThread, started 140410050459392)>, <ExcThread(validate_post, started 140408982071040)>, <ExcThread(job_monitor, started 140409552480000)>, <ExcThread(queue_monitor, started 140408973678336)>, <ExcThread(queue_monitoring, started 140409586050816)>, <ExcThread(execute_payloads, started 140408956892928)>, <ExcThread(copytool_out, started 140409809008384)>]
2019-08-10 13:30:32,013 | INFO     | execute_payloads    | pilot.control.payload            | execute_payloads          | [payload] execute_payloads thread has finished
2019-08-10 13:30:32,045 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | thread count now at 6 threads
2019-08-10 13:30:32,045 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | enumerate: [<_MainThread(MainThread, started 140410050459392)>, <ExcThread(validate_post, started 140408982071040)>, <ExcThread(job_monitor, started 140409552480000)>, <ExcThread(queue_monitor, started 140408973678336)>, <ExcThread(queue_monitoring, started 140409586050816)>, <ExcThread(copytool_out, started 140409809008384)>]
2019-08-10 13:30:32,103 | INFO     | validate_post       | pilot.control.payload            | validate_post             | [payload] validate_post thread has finished
2019-08-10 13:30:32,146 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | thread count now at 5 threads
2019-08-10 13:30:32,146 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | enumerate: [<_MainThread(MainThread, started 140410050459392)>, <ExcThread(job_monitor, started 140409552480000)>, <ExcThread(queue_monitor, started 140408973678336)>, <ExcThread(queue_monitoring, started 140409586050816)>, <ExcThread(copytool_out, started 140409809008384)>]
2019-08-10 13:30:32,376 | WARNING  | queue_monitor       | pilot.util.common                | should_abort              | job:queue_monitor:received graceful stop - abort after this iteration
2019-08-10 13:30:32,376 | DEBUG    | queue_monitor       | pilot.control.job                | queue_monitor             | [job] queue monitor thread has finished
2019-08-10 13:30:32,448 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | thread count now at 4 threads
2019-08-10 13:30:32,448 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | enumerate: [<_MainThread(MainThread, started 140410050459392)>, <ExcThread(job_monitor, started 140409552480000)>, <ExcThread(queue_monitoring, started 140409586050816)>, <ExcThread(copytool_out, started 140409809008384)>]
2019-08-10 13:30:32,582 | DEBUG    | copytool_out        | pilot.control.data               | copytool_out              | [data] copytool_out thread has finished
2019-08-10 13:30:32,650 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | thread count now at 3 threads
2019-08-10 13:30:32,650 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | enumerate: [<_MainThread(MainThread, started 140410050459392)>, <ExcThread(job_monitor, started 140409552480000)>, <ExcThread(queue_monitoring, started 140409586050816)>]
2019-08-10 13:30:34,077 | DEBUG    | queue_monitoring    | pilot.control.data               | queue_monitoring          | [data] queue_monitor thread has finished
2019-08-10 13:30:34,161 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | thread count now at 2 threads
2019-08-10 13:30:34,161 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | enumerate: [<_MainThread(MainThread, started 140410050459392)>, <ExcThread(job_monitor, started 140409552480000)>]
2019-08-10 13:31:03,106 | WARNING  | job_monitor         | pilot.control.job                | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 62 s)
2019-08-10 13:31:03,106 | DEBUG    | job_monitor         | pilot.control.job                | job_monitor               | [job] job monitor thread has finished
2019-08-10 13:31:03,170 | INFO     | MainThread          | pilot.workflow.generic           | run                       | end of generic workflow (traces error code: 0)
2019-08-10 13:31:03,171 | INFO     | MainThread          | root                             | wrap_up                   | traces error code: 0
2019-08-10 13:31:03,171 | INFO     | MainThread          | root                             | wrap_up                   | pilot has finished
2019-08-10 13:31:03 UTC [wrapper] ==== pilot stdout END ====
2019-08-10 13:31:03 UTC [wrapper] ==== wrapper stdout RESUME ====
2019-08-10 13:31:03 UTC [wrapper] Pilot exit status: 0
2019-08-10 13:31:03 UTC [wrapper] STATUSCODE: 0
2019-08-10 13:31:03 UTC [wrapper] apfmon messages muted
---- find pandaID.out ----
insgesamt 48
-rw-------  1 boinc boinc 11357 25. Jul 16:38 LICENSE
drwx------ 14 boinc boinc  4096 10. Aug 09:54 pilot
-rwx------  1 boinc boinc 20463 25. Jul 16:38 pilot.py
-rw-------  1 boinc boinc     8  7. Aug 13:02 PILOTVERSION
-rw-------  1 boinc boinc  2251 25. Jul 16:38 README.md
-rw-------  1 boinc boinc   221 25. Jul 16:38 TODO.md

2019-08-10 13:31:03 UTC [wrapper] Test setup, not cleaning
2019-08-10 13:31:03 UTC [wrapper] ==== wrapper stdout END ====
2019-08-10 13:31:03 UTC [wrapper] ==== wrapper stderr END ====
***************diag file************
runtimeenvironments=APPS/HEP/ATLAS-SITE;
Processors=1
WallTime=20239.58s
KernelTime=199.81s
UserTime=39492.55s
CPUUsage=196%
MaxResidentMemory=2030632kB
AverageResidentMemory=0kB
AverageTotalMemory=0kB
AverageUnsharedMemory=0kB
AverageUnsharedStack=0kB
AverageSharedMemory=0kB
PageSize=4096B
MajorPageFaults=555841
MinorPageFaults=11157940
Swaps=0
ForcedSwitches=5663726
WaitSwitches=14101922
Inputs=128854760
Outputs=507984
SocketReceived=0
SocketSent=0
Signals=0

nodename=gyllic@boinc-debian-rechner
exitcode=0
******************************WorkDir***********************
insgesamt 382008
drwxrwx--x 7 boinc boinc      4096 Aug 10 15:31 .
drwxr-x--x 3 boinc boinc      4096 Aug  9 07:11 ..
-rw------- 1 boinc boinc       514 Aug 10 15:31 1HMNDm5QMGvnShfckohDCDFpABFKDmABFKDm1x5XDmABFKDmItFHPn.diag
-rw------- 1 boinc boinc   7408903 Aug 10 09:54 agis_ddmendpoints.json
-rw------- 1 boinc boinc   4507141 Aug 10 09:54 agis_schedconf.cvmfs.json
drwx------ 2 boinc boinc      4096 Aug 10 09:53 .alrb
drwxr-xr-x 3 boinc boinc      4096 Aug 10 09:53 APPS
drwxr-xr-x 2 boinc boinc      4096 Aug 10 09:54 .arc
-rw------- 1 boinc boinc       546 Aug 10 09:53 .asetup
-rw------- 1 boinc boinc       826 Aug 10 09:54 .asetup.save
-rw-r--r-- 1 boinc boinc         0 Aug 10 09:53 boinc_lockfile
-rw-r--r-- 1 boinc boinc      8192 Aug 10 15:30 boinc_mmap_file
-rw-r--r-- 1 boinc boinc       537 Aug 10 15:24 boinc_task_state.xml
-rw-r--r-- 1 boinc boinc 376818884 Aug 10 09:53 EVNT.17323818._001192.pool.root.1
-rw------- 1 boinc boinc     62881 Aug 10 15:30 heartbeat.json
-rw-r--r-- 1 boinc boinc      5956 Aug 10 09:53 init_data.xml
-rw-r--r-- 1 boinc boinc    262344 Aug 10 09:53 input.tar.gz
-rw-r--r-- 1 boinc boinc       112 Aug 10 09:53 job.xml
-rw------- 1 boinc boinc   1072495 Aug 10 15:31 log.18604991._042817.job.log.1
-rw------- 1 boinc boinc    587292 Aug 10 15:30 log.18604991._042817.job.log.tgz.1
-rw------- 1 boinc boinc       391 Aug 10 15:31 output.list
-rw------- 1 boinc boinc      2874 Aug  9 17:56 pandaJobData.out
drwx------ 3 boinc boinc      4096 Aug  7 13:02 pilot2
-rw-r--r-- 1 boinc boinc    253018 Aug  9 17:29 pilot2.tar.gz
-rw------- 1 boinc boinc     10928 Aug 10 15:31 pilotlog.txt
-rw-r--r-- 1 boinc boinc      4468 Aug  9 17:55 queuedata.json
-rw-r--r-- 1 boinc boinc       815 Aug 10 09:53 RTE.tar.gz
-rwxr-xr-x 1 boinc boinc      8648 Aug 10 09:53 run_atlas
-rwx------ 1 boinc boinc     15232 Aug  9 17:56 runpilot2-wrapper.sh
-rw-r--r-- 1 boinc boinc       692 Aug 10 15:31 runtime_log
-rw-r--r-- 1 boinc boinc      8040 Aug 10 15:31 runtime_log.err
-rw------- 1 boinc boinc       247 Aug 10 09:53 setup.sh.local
drwxrwx--x 2 boinc boinc      4096 Aug 10 15:31 shared
-rw-r--r-- 1 boinc boinc      8688 Aug 10 09:53 start_atlas.sh
-rw-r--r-- 1 boinc boinc     18774 Aug 10 15:31 stderr.txt
-rw-r--r-- 1 boinc boinc       107 Aug 10 09:53 wrapper_26015_x86_64-pc-linux-gnu
-rw-r--r-- 1 boinc boinc        28 Aug 10 15:30 wrapper_checkpoint.txt

running start_atlas return value is 0
Parent exit 0
child process exit 0
15:31:03 (14919): run_atlas exited; CPU time 39492.952000
15:31:03 (14919): called boinc_finish(0)

</stderr_txt>
]]>

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