Name | KfMNDmbqMGvnShfckohDCDFpABFKDmABFKDmfm6XDmABFKDmJ7yPbm_1 |
Workunit | 1915595 |
Created | 9 Aug 2019, 20:29:06 UTC |
Sent | 10 Aug 2019, 1:31:42 UTC |
Report deadline | 17 Aug 2019, 1:31:42 UTC |
Received | 10 Aug 2019, 6:09:22 UTC |
Server state | Over |
Outcome | Success |
Client state | Done |
Exit status | 0 (0x00000000) |
Computer ID | 4132 |
Run time | 4 hours 31 min 13 sec |
CPU time | 1 days 4 hours 17 min 58 sec |
Validate state | Valid |
Credit | 1,071.97 |
Device peak FLOPS | 28.46 GFLOPS |
Application version | ATLAS Simulation v0.70 (native_mt) x86_64-pc-linux-gnu |
Peak working set size | 1.85 GB |
Peak swap size | 2.56 GB |
Peak disk usage | 766.09 MB |
<core_client_version>7.6.31</core_client_version> <![CDATA[ <stderr_txt> 19:34:13 (15001): wrapper (7.7.26015): starting 19:34:13 (15001): wrapper: running run_atlas (--nthreads 8) singularity image is /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sys.argv = ['run_atlas', '--nthreads', '8'] THREADS=8 Checking for CVMFS CVMFS is installed OS:cat: /etc/redhat-release: No such file or directory This is not SLC6, need to run with Singularity.... Checking Singularity... Singularity is installed, version 2.4.2-dist Testing the function of Singularity... Checking singularity with cmd:singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 hostname Singularity Works... copy /var/lib/boinc2/slots/6/shared/RTE.tar.gz copy /var/lib/boinc2/slots/6/shared/ATLAS.root_0 copy /var/lib/boinc2/slots/6/shared/input.tar.gz copy /var/lib/boinc2/slots/6/shared/start_atlas.sh export ATHENA_PROC_NUMBER=8;start atlas job with grep: pandaJobData.out: No such file or directory cmd = singularity exec --pwd /var/lib/boinc2/slots/6 -B /cvmfs,/var /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sh start_atlas.sh > runtime_log 2> runtime_log.err running cmd return value is 0 Moving ./HITS.18722298._012733.pool.root.1 to shared/HITS.pool.root.1 *****************The last 100 lines of the pilot log****************** 2019-08-10 06:03:56,942 | INFO | retrieve | pilot.util.auxiliary | make_job_report | job summary report 2019-08-10 06:03:56,942 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-08-10 06:03:56,942 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4442307542 2019-08-10 06:03:56,942 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18722298 2019-08-10 06:03:56,942 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none) 2019-08-10 06:03:56,942 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE 2019-08-10 06:03:56,942 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished 2019-08-10 06:03:56,942 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0 2019-08-10 06:03:56,943 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0 2019-08-10 06:03:56,943 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag: 2019-08-10 06:03:56,943 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0 2019-08-10 06:03:56,943 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK 2019-08-10 06:03:56,943 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 103111 s 2019-08-10 06:03:56,943 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 200 2019-08-10 06:03:56,943 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0 2019-08-10 06:03:56,943 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 63966 2019-08-10 06:03:56,943 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: 63966 2019-08-10 06:03:56,943 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 8 2019-08-10 06:03:56,943 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False 2019-08-10 06:03:56,943 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-08-10 06:03:56,943 | INFO | retrieve | pilot.util.auxiliary | make_job_report | 2019-08-10 06:03:56,944 | INFO | retrieve | pilot.control.job | has_job_completed | job 4442307542 has completed 2019-08-10 06:03:56,944 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called 2019-08-10 06:03:56,958 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /var/lib/boinc2/slots/6/PanDA_Pilot-4442307542 2019-08-10 06:03:57,722 | INFO | monitor | pilot.control.monitor | control | 16053 s have passed since pilot start 2019-08-10 06:03:57,962 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [63966] 2019-08-10 06:03:57,962 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 63966 2019-08-10 06:03:57,962 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes 2019-08-10 06:03:58,966 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes 2019-08-10 06:03:58,966 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=63966 2019-08-10 06:03:59,149 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [63966] (in reverse order) 2019-08-10 06:03:59,269 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s) 2019-08-10 06:03:59,269 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs 2019-08-10 06:03:59,270 | INFO | retrieve | pilot.control.job | retrieve | ready for new job 2019-08-10 06:03:59,270 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging No handlers could be found for logger "pilot.util.mpi" 2019-08-10 06:03:59,774 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1 2019-08-10 06:04:09,823 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1 2019-08-10 06:04:09,826 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /var/lib/boinc2/slots/6 2019-08-10 06:04:09,867 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (275750322176 B) 2019-08-10 06:04:09,868 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job 2019-08-10 06:04:09,868 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished 2019-08-10 06:04:09,959 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 16 threads 2019-08-10 06:04:09,960 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140420734863104)>, <ExcThread(job, started 140420519380736)>, <ExcThread(job_monitor, started 140419593664256)>, <ExcThread(validate, started 140420510988032)>, <ExcThread(copytool_in, started 140420088571648)>, <ExcThread(queue_monitor, started 140419585271552)>, <ExcThread(validate_post, started 140420105357056)>, <ExcThread(failed_post, started 140420080178944)>, <ExcThread(execute_payloads, started 140419576878848)>, <ExcThread(queue_monitoring, started 140420096964352)>, <ExcThread(monitor, started 140420122142464)>, <ExcThread(validate_pre, started 140420130535168)>, <ExcThread(payload, started 140420477417216)>, <ExcThread(copytool_out, started 140420485809920)>, <ExcThread(create_data_payload, started 140420494202624)>, <ExcThread(data, started 140420502595328)>] 2019-08-10 06:04:09,976 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished 2019-08-10 06:04:10,247 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished 2019-08-10 06:04:10,253 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set 2019-08-10 06:04:10,253 | DEBUG | job | pilot.control.job | control | [job] control thread has finished 2019-08-10 06:04:10,293 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration 2019-08-10 06:04:10,432 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished 2019-08-10 06:04:10,466 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 12 threads 2019-08-10 06:04:10,466 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140420734863104)>, <ExcThread(job_monitor, started 140419593664256)>, <ExcThread(validate, started 140420510988032)>, <ExcThread(queue_monitor, started 140419585271552)>, <ExcThread(validate_post, started 140420105357056)>, <ExcThread(execute_payloads, started 140419576878848)>, <ExcThread(queue_monitoring, started 140420096964352)>, <ExcThread(monitor, started 140420122142464)>, <ExcThread(validate_pre, started 140420130535168)>, <ExcThread(payload, started 140420477417216)>, <ExcThread(copytool_out, started 140420485809920)>, <ExcThread(data, started 140420502595328)>] 2019-08-10 06:04:10,610 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration 2019-08-10 06:04:10,714 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set 2019-08-10 06:04:10,714 | DEBUG | data | pilot.control.data | control | [data] control thread has finished 2019-08-10 06:04:10,754 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended 2019-08-10 06:04:10,762 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished 2019-08-10 06:04:10,768 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 9 threads 2019-08-10 06:04:10,768 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140420734863104)>, <ExcThread(job_monitor, started 140419593664256)>, <ExcThread(queue_monitor, started 140419585271552)>, <ExcThread(validate_post, started 140420105357056)>, <ExcThread(execute_payloads, started 140419576878848)>, <ExcThread(queue_monitoring, started 140420096964352)>, <ExcThread(validate_pre, started 140420130535168)>, <ExcThread(payload, started 140420477417216)>, <ExcThread(copytool_out, started 140420485809920)>] 2019-08-10 06:04:11,030 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration 2019-08-10 06:04:11,031 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished 2019-08-10 06:04:11,046 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set 2019-08-10 06:04:11,046 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished 2019-08-10 06:04:11,060 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished 2019-08-10 06:04:11,070 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 6 threads 2019-08-10 06:04:11,070 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140420734863104)>, <ExcThread(job_monitor, started 140419593664256)>, <ExcThread(validate_post, started 140420105357056)>, <ExcThread(execute_payloads, started 140419576878848)>, <ExcThread(queue_monitoring, started 140420096964352)>, <ExcThread(copytool_out, started 140420485809920)>] 2019-08-10 06:04:11,095 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished 2019-08-10 06:04:11,172 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 5 threads 2019-08-10 06:04:11,172 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140420734863104)>, <ExcThread(job_monitor, started 140419593664256)>, <ExcThread(validate_post, started 140420105357056)>, <ExcThread(queue_monitoring, started 140420096964352)>, <ExcThread(copytool_out, started 140420485809920)>] 2019-08-10 06:04:11,293 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished 2019-08-10 06:04:11,374 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 4 threads 2019-08-10 06:04:11,374 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140420734863104)>, <ExcThread(job_monitor, started 140419593664256)>, <ExcThread(validate_post, started 140420105357056)>, <ExcThread(queue_monitoring, started 140420096964352)>] 2019-08-10 06:04:11,454 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished 2019-08-10 06:04:11,475 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 3 threads 2019-08-10 06:04:11,475 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140420734863104)>, <ExcThread(job_monitor, started 140419593664256)>, <ExcThread(queue_monitoring, started 140420096964352)>] 2019-08-10 06:04:13,611 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished 2019-08-10 06:04:13,698 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 2 threads 2019-08-10 06:04:13,699 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140420734863104)>, <ExcThread(job_monitor, started 140419593664256)>] 2019-08-10 06:04:44,126 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 62 s) 2019-08-10 06:04:44,126 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished 2019-08-10 06:04:44,219 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0) 2019-08-10 06:04:44,220 | INFO | MainThread | root | wrap_up | traces error code: 0 2019-08-10 06:04:44,220 | INFO | MainThread | root | wrap_up | pilot has finished 2019-08-10 06:05:24 UTC [wrapper] ==== pilot stdout END ==== 2019-08-10 06:05:24 UTC [wrapper] ==== wrapper stdout RESUME ==== 2019-08-10 06:05:24 UTC [wrapper] Pilot exit status: 0 2019-08-10 06:05:24 UTC [wrapper] STATUSCODE: 0 2019-08-10 06:05:24 UTC [wrapper] apfmon messages muted ---- find pandaID.out ---- total 48 -rw-rw-r-- 1 320 320 11357 Jul 25 08:38 LICENSE drwxrwxr-x 14 320 320 4096 Aug 9 19:36 pilot -rwxrwxr-x 1 320 320 20463 Jul 25 08:38 pilot.py -rw-r--r-- 1 320 320 8 Aug 7 05:02 PILOTVERSION -rw-rw-r-- 1 320 320 2251 Jul 25 08:38 README.md -rw-rw-r-- 1 320 320 221 Jul 25 08:38 TODO.md 2019-08-10 06:05:24 UTC [wrapper] Test setup, not cleaning 2019-08-10 06:05:24 UTC [wrapper] ==== wrapper stdout END ==== 2019-08-10 06:05:24 UTC [wrapper] ==== wrapper stderr END ==== ***************diag file************ runtimeenvironments=APPS/HEP/ATLAS-SITE; Processors=1 WallTime=16250.97s KernelTime=1536.79s UserTime=101878.27s CPUUsage=636% MaxResidentMemory=1983664kB AverageResidentMemory=0kB AverageTotalMemory=0kB AverageUnsharedMemory=0kB AverageUnsharedStack=0kB AverageSharedMemory=0kB PageSize=4096B MajorPageFaults=877602 MinorPageFaults=28253117 Swaps=0 ForcedSwitches=7775024 WaitSwitches=11202140 Inputs=157559376 Outputs=961776 SocketReceived=0 SocketSent=0 Signals=0 nodename=wHewitt@d8 exitcode=0 ******************************WorkDir*********************** total 286124 drwxrwx--x 7 root root 4096 Aug 10 00:05 . drwxrwxrwx 35 root root 4096 Aug 9 02:25 .. -rw------- 1 root root 7408903 Aug 9 19:36 agis_ddmendpoints.json -rw------- 1 root root 4507141 Aug 9 19:36 agis_schedconf.cvmfs.json drwx------ 2 root root 4096 Aug 9 19:34 .alrb drwxr-xr-x 3 root root 4096 Aug 9 19:34 APPS drwxr-xr-x 2 root root 4096 Aug 9 19:36 .arc -rw------- 1 root root 543 Aug 9 19:34 .asetup -rw------- 1 root root 829 Aug 9 19:38 .asetup.save -rw-r--r-- 1 root root 0 Aug 9 19:34 boinc_lockfile -rw-r--r-- 1 root root 8192 Aug 10 00:05 boinc_mmap_file -rw-r--r-- 1 root root 538 Aug 9 23:43 boinc_task_state.xml -rw-r--r-- 1 root root 278186103 Aug 9 19:34 EVNT.18605754._000245.pool.root.1 -rw------- 1 root root 101298 Aug 10 00:03 heartbeat.json -rw-r--r-- 1 root root 8513 Aug 9 19:34 init_data.xml -rw-r--r-- 1 root root 262339 Aug 9 19:34 input.tar.gz -rw-r--r-- 1 root root 112 Aug 9 19:34 job.xml -rw------- 1 root root 499 Aug 10 00:05 KfMNDmbqMGvnShfckohDCDFpABFKDmABFKDmfm6XDmABFKDmJ7yPbm.diag -rw------- 1 root root 856371 Aug 10 00:05 log.18722298._012733.job.log.1 -rw------- 1 root root 1208710 Aug 10 00:03 log.18722298._012733.job.log.tgz.1 -rw------- 1 root root 391 Aug 10 00:05 output.list -rw------- 1 4871 1028 2915 Aug 9 10:23 pandaJobData.out drwxr-xr-x 3 320 320 4096 Aug 7 05:02 pilot2 -rw-r--r-- 1 root root 253018 Aug 9 09:29 pilot2.tar.gz -rw------- 1 root root 10413 Aug 10 00:04 pilotlog.txt -rw-r--r-- 1 root root 4468 Aug 9 10:20 queuedata.json -rw-r--r-- 1 root root 815 Aug 9 19:34 RTE.tar.gz -rwxr-xr-x 1 root root 8648 Aug 9 19:34 run_atlas -rwx------ 1 4871 1028 15232 Aug 9 10:23 runpilot2-wrapper.sh -rw-r--r-- 1 root root 692 Aug 10 00:05 runtime_log -rw-r--r-- 1 root root 6844 Aug 10 00:05 runtime_log.err drwxrwx--x 2 root root 4096 Aug 10 00:05 shared -rw-r--r-- 1 root root 8688 Aug 9 19:34 start_atlas.sh -rw-r--r-- 1 root root 18439 Aug 10 00:05 stderr.txt -rw-r--r-- 1 root root 107 Aug 9 19:34 wrapper_26015_x86_64-pc-linux-gnu -rw-r--r-- 1 root root 29 Aug 10 00:05 wrapper_checkpoint.txt running start_atlas return value is 0 Parent exit 0 child process exit 0 00:05:25 (15001): run_atlas exited; CPU time 101878.524000 00:05:25 (15001): called boinc_finish(0) </stderr_txt> ]]>
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