Name | fHWNDmeqZGvnShfckohDCDFpABFKDmABFKDmHwSYDmABFKDmLbgXfn_1 |
Workunit | 1915822 |
Created | 10 Aug 2019, 11:36:01 UTC |
Sent | 10 Aug 2019, 11:44:10 UTC |
Report deadline | 17 Aug 2019, 11:44:10 UTC |
Received | 10 Aug 2019, 16:30:46 UTC |
Server state | Over |
Outcome | Success |
Client state | Done |
Exit status | 0 (0x00000000) |
Computer ID | 4132 |
Run time | 4 hours 34 min 43 sec |
CPU time | 1 days 5 hours 40 min 19 sec |
Validate state | Valid |
Credit | 1,085.77 |
Device peak FLOPS | 28.46 GFLOPS |
Application version | ATLAS Simulation v0.70 (native_mt) x86_64-pc-linux-gnu |
Peak working set size | 1.85 GB |
Peak swap size | 21.43 GB |
Peak disk usage | 770.21 MB |
<core_client_version>7.6.31</core_client_version> <![CDATA[ <stderr_txt> 05:52:43 (7613): wrapper (7.7.26015): starting 05:52:43 (7613): wrapper: running run_atlas (--nthreads 8) singularity image is /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sys.argv = ['run_atlas', '--nthreads', '8'] THREADS=8 Checking for CVMFS CVMFS is installed OS:cat: /etc/redhat-release: No such file or directory This is not SLC6, need to run with Singularity.... Checking Singularity... Singularity is installed, version 2.4.2-dist Testing the function of Singularity... Checking singularity with cmd:singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 hostname Singularity Works... copy /var/lib/boinc2/slots/30/shared/RTE.tar.gz copy /var/lib/boinc2/slots/30/shared/ATLAS.root_0 copy /var/lib/boinc2/slots/30/shared/input.tar.gz copy /var/lib/boinc2/slots/30/shared/start_atlas.sh export ATHENA_PROC_NUMBER=8;start atlas job with grep: pandaJobData.out: No such file or directory cmd = singularity exec --pwd /var/lib/boinc2/slots/30 -B /cvmfs,/var /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sh start_atlas.sh > runtime_log 2> runtime_log.err running cmd return value is 0 Moving ./HITS.18722298._014045.pool.root.1 to shared/HITS.pool.root.1 *****************The last 100 lines of the pilot log****************** 2019-08-10 16:26:54,718 | DEBUG | queue_monitor | pilot.control.job | send_state | wrote heartbeat to file /var/lib/boinc2/slots/30/heartbeat.json 2019-08-10 16:26:54,719 | INFO | queue_monitor | pilot.control.job | queue_monitor | job 4442733334 was dequeued from the monitored payloads queue 2019-08-10 16:26:55,423 | INFO | retrieve | pilot.util.auxiliary | make_job_report | 2019-08-10 16:26:55,423 | INFO | retrieve | pilot.util.auxiliary | make_job_report | job summary report 2019-08-10 16:26:55,424 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-08-10 16:26:55,424 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4442733334 2019-08-10 16:26:55,424 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18722298 2019-08-10 16:26:55,424 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none) 2019-08-10 16:26:55,424 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE 2019-08-10 16:26:55,424 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished 2019-08-10 16:26:55,424 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0 2019-08-10 16:26:55,425 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0 2019-08-10 16:26:55,425 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag: 2019-08-10 16:26:55,425 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0 2019-08-10 16:26:55,425 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK 2019-08-10 16:26:55,425 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 107867 s 2019-08-10 16:26:55,425 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 200 2019-08-10 16:26:55,426 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0 2019-08-10 16:26:55,426 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 54516 2019-08-10 16:26:55,426 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: 54516 2019-08-10 16:26:55,426 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 8 2019-08-10 16:26:55,426 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False 2019-08-10 16:26:55,426 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-08-10 16:26:55,426 | INFO | retrieve | pilot.util.auxiliary | make_job_report | 2019-08-10 16:26:55,426 | INFO | retrieve | pilot.control.job | has_job_completed | job 4442733334 has completed 2019-08-10 16:26:55,427 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called 2019-08-10 16:26:55,434 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /var/lib/boinc2/slots/30/PanDA_Pilot-4442733334 2019-08-10 16:26:56,440 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [54516] 2019-08-10 16:26:56,440 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 54516 2019-08-10 16:26:56,440 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes 2019-08-10 16:26:57,442 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes 2019-08-10 16:26:57,442 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=54516 2019-08-10 16:26:57,674 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [54516] (in reverse order) 2019-08-10 16:26:57,804 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s) 2019-08-10 16:26:57,805 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs 2019-08-10 16:26:57,805 | INFO | retrieve | pilot.control.job | retrieve | ready for new job 2019-08-10 16:26:57,805 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging No handlers could be found for logger "pilot.util.mpi" 2019-08-10 16:26:58,357 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1 2019-08-10 16:27:08,406 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1 2019-08-10 16:27:08,406 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /var/lib/boinc2/slots/30 2019-08-10 16:27:08,496 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (279018733568 B) 2019-08-10 16:27:08,496 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job 2019-08-10 16:27:08,497 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished 2019-08-10 16:27:08,547 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended 2019-08-10 16:27:08,582 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set 2019-08-10 16:27:08,582 | DEBUG | job | pilot.control.job | control | [job] control thread has finished 2019-08-10 16:27:08,606 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished 2019-08-10 16:27:08,722 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished 2019-08-10 16:27:08,806 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration 2019-08-10 16:27:08,818 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 12 threads 2019-08-10 16:27:08,819 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139670038193920)>, <ExcThread(queue_monitoring, started 139669543036672)>, <ExcThread(validate_pre, started 139669568214784)>, <ExcThread(copytool_out, started 139669796742912)>, <ExcThread(execute_payloads, started 139668947449600)>, <ExcThread(create_data_payload, started 139669576607488)>, <ExcThread(copytool_in, started 139668972627712)>, <ExcThread(data, started 139669805135616)>, <ExcThread(failed_post, started 139668955842304)>, <ExcThread(queue_monitor, started 139668964235008)>, <ExcThread(job_monitor, started 139668981020416)>, <ExcThread(payload, started 139669585000192)>] 2019-08-10 16:27:09,089 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished 2019-08-10 16:27:09,120 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 11 threads 2019-08-10 16:27:09,120 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139670038193920)>, <ExcThread(queue_monitoring, started 139669543036672)>, <ExcThread(validate_pre, started 139669568214784)>, <ExcThread(copytool_out, started 139669796742912)>, <ExcThread(execute_payloads, started 139668947449600)>, <ExcThread(copytool_in, started 139668972627712)>, <ExcThread(data, started 139669805135616)>, <ExcThread(failed_post, started 139668955842304)>, <ExcThread(queue_monitor, started 139668964235008)>, <ExcThread(job_monitor, started 139668981020416)>, <ExcThread(payload, started 139669585000192)>] 2019-08-10 16:27:09,326 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set 2019-08-10 16:27:09,326 | DEBUG | data | pilot.control.data | control | [data] control thread has finished 2019-08-10 16:27:09,410 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set 2019-08-10 16:27:09,410 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished 2019-08-10 16:27:09,422 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 9 threads 2019-08-10 16:27:09,422 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139670038193920)>, <ExcThread(queue_monitoring, started 139669543036672)>, <ExcThread(validate_pre, started 139669568214784)>, <ExcThread(copytool_out, started 139669796742912)>, <ExcThread(execute_payloads, started 139668947449600)>, <ExcThread(copytool_in, started 139668972627712)>, <ExcThread(failed_post, started 139668955842304)>, <ExcThread(queue_monitor, started 139668964235008)>, <ExcThread(job_monitor, started 139668981020416)>] 2019-08-10 16:27:09,526 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration 2019-08-10 16:27:09,702 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished 2019-08-10 16:27:09,738 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 8 threads 2019-08-10 16:27:09,738 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139670038193920)>, <ExcThread(queue_monitoring, started 139669543036672)>, <ExcThread(validate_pre, started 139669568214784)>, <ExcThread(copytool_out, started 139669796742912)>, <ExcThread(execute_payloads, started 139668947449600)>, <ExcThread(failed_post, started 139668955842304)>, <ExcThread(queue_monitor, started 139668964235008)>, <ExcThread(job_monitor, started 139668981020416)>] 2019-08-10 16:27:09,809 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished 2019-08-10 16:27:09,830 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished 2019-08-10 16:27:09,842 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 6 threads 2019-08-10 16:27:09,842 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139670038193920)>, <ExcThread(queue_monitoring, started 139669543036672)>, <ExcThread(validate_pre, started 139669568214784)>, <ExcThread(failed_post, started 139668955842304)>, <ExcThread(queue_monitor, started 139668964235008)>, <ExcThread(job_monitor, started 139668981020416)>] 2019-08-10 16:27:09,868 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished 2019-08-10 16:27:09,926 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration 2019-08-10 16:27:09,926 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished 2019-08-10 16:27:09,945 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished 2019-08-10 16:27:09,946 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 3 threads 2019-08-10 16:27:09,946 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139670038193920)>, <ExcThread(queue_monitoring, started 139669543036672)>, <ExcThread(job_monitor, started 139668981020416)>] 2019-08-10 16:27:12,527 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished 2019-08-10 16:27:12,570 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 2 threads 2019-08-10 16:27:12,571 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139670038193920)>, <ExcThread(job_monitor, started 139668981020416)>] 2019-08-10 16:27:20,762 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 61 s) 2019-08-10 16:27:20,762 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished 2019-08-10 16:27:20,826 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0) 2019-08-10 16:27:20,826 | INFO | MainThread | root | wrap_up | traces error code: 0 2019-08-10 16:27:20,826 | INFO | MainThread | root | wrap_up | pilot has finished 2019-08-10 16:27:21 UTC [wrapper] ==== pilot stdout END ==== 2019-08-10 16:27:21 UTC [wrapper] ==== wrapper stdout RESUME ==== 2019-08-10 16:27:21 UTC [wrapper] Pilot exit status: 0 2019-08-10 16:27:21 UTC [wrapper] STATUSCODE: 0 2019-08-10 16:27:21 UTC [wrapper] apfmon messages muted ---- find pandaID.out ---- total 48 -rw-rw-r-- 1 320 320 11357 Jul 25 08:38 LICENSE drwxrwxr-x 14 320 320 4096 Aug 10 05:55 pilot -rwxrwxr-x 1 320 320 20463 Jul 25 08:38 pilot.py -rw-r--r-- 1 320 320 8 Aug 7 05:02 PILOTVERSION -rw-rw-r-- 1 320 320 2251 Jul 25 08:38 README.md -rw-rw-r-- 1 320 320 221 Jul 25 08:38 TODO.md 2019-08-10 16:27:21 UTC [wrapper] Test setup, not cleaning 2019-08-10 16:27:21 UTC [wrapper] ==== wrapper stdout END ==== 2019-08-10 16:27:21 UTC [wrapper] ==== wrapper stderr END ==== ***************diag file************ runtimeenvironments=APPS/HEP/ATLAS-SITE; Processors=1 WallTime=16440.93s KernelTime=1370.38s UserTime=106819.07s CPUUsage=658% MaxResidentMemory=2032248kB AverageResidentMemory=0kB AverageTotalMemory=0kB AverageUnsharedMemory=0kB AverageUnsharedStack=0kB AverageSharedMemory=0kB PageSize=4096B MajorPageFaults=667449 MinorPageFaults=20274313 Swaps=0 ForcedSwitches=2952117 WaitSwitches=10926130 Inputs=151871624 Outputs=980368 SocketReceived=0 SocketSent=0 Signals=0 nodename=wHewitt@d8 exitcode=0 ******************************WorkDir*********************** total 285748 drwxrwx--x 7 root root 4096 Aug 10 10:27 . drwxrwxrwx 35 root root 4096 Aug 9 02:25 .. -rw------- 1 root root 7408903 Aug 10 05:55 agis_ddmendpoints.json -rw------- 1 root root 4506548 Aug 10 05:55 agis_schedconf.cvmfs.json drwx------ 2 root root 4096 Aug 10 05:53 .alrb drwxr-xr-x 3 root root 4096 Aug 10 05:53 APPS drwxr-xr-x 2 root root 4096 Aug 10 05:55 .arc -rw------- 1 root root 544 Aug 10 05:53 .asetup -rw------- 1 root root 829 Aug 10 05:57 .asetup.save -rw-r--r-- 1 root root 0 Aug 10 05:52 boinc_lockfile -rw-r--r-- 1 root root 8192 Aug 10 10:27 boinc_mmap_file -rw-r--r-- 1 root root 539 Aug 10 09:58 boinc_task_state.xml -rw-r--r-- 1 root root 277831214 Aug 10 05:53 EVNT.18605754._000271.pool.root.1 -rw------- 1 root root 499 Aug 10 10:27 fHWNDmeqZGvnShfckohDCDFpABFKDmABFKDmHwSYDmABFKDmLbgXfn.diag -rw------- 1 root root 81705 Aug 10 10:26 heartbeat.json -rw-r--r-- 1 root root 8514 Aug 10 05:52 init_data.xml -rw-r--r-- 1 root root 262344 Aug 10 05:53 input.tar.gz -rw-r--r-- 1 root root 112 Aug 10 05:52 job.xml -rw------- 1 root root 856245 Aug 10 10:27 log.18722298._014045.job.log.1 -rw------- 1 root root 1202676 Aug 10 10:26 log.18722298._014045.job.log.tgz.1 -rw------- 1 root root 391 Aug 10 10:27 output.list -rw------- 1 4871 1028 2915 Aug 10 00:15 pandaJobData.out drwxr-xr-x 3 320 320 4096 Aug 7 05:02 pilot2 -rw-r--r-- 1 root root 253018 Aug 9 23:29 pilot2.tar.gz -rw------- 1 root root 9835 Aug 10 10:27 pilotlog.txt -rw-r--r-- 1 root root 4468 Aug 10 00:15 queuedata.json -rw-r--r-- 1 root root 815 Aug 10 05:53 RTE.tar.gz -rwxr-xr-x 1 root root 8648 Aug 10 05:52 run_atlas -rwx------ 1 4871 1028 15232 Aug 10 00:15 runpilot2-wrapper.sh -rw-r--r-- 1 root root 692 Aug 10 10:27 runtime_log -rw-r--r-- 1 root root 6871 Aug 10 10:27 runtime_log.err drwxrwx--x 2 root root 4096 Aug 10 10:27 shared -rw-r--r-- 1 root root 8688 Aug 10 05:53 start_atlas.sh -rw-r--r-- 1 root root 18198 Aug 10 10:27 stderr.txt -rw-r--r-- 1 root root 107 Aug 10 05:52 wrapper_26015_x86_64-pc-linux-gnu -rw-r--r-- 1 root root 29 Aug 10 10:27 wrapper_checkpoint.txt running start_atlas return value is 0 Parent exit 0 child process exit 0 10:27:24 (7613): run_atlas exited; CPU time 106819.348000 10:27:24 (7613): called boinc_finish(0) </stderr_txt> ]]>
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