Name | 3LCMDmshaGvnShfckohDCDFpABFKDmABFKDmjVUYDmABFKDmL3ssrn_2 |
Workunit | 1915836 |
Created | 11 Aug 2019, 2:49:08 UTC |
Sent | 11 Aug 2019, 6:15:52 UTC |
Report deadline | 18 Aug 2019, 6:15:52 UTC |
Received | 11 Aug 2019, 19:32:33 UTC |
Server state | Over |
Outcome | Success |
Client state | Done |
Exit status | 0 (0x00000000) |
Computer ID | 3911 |
Run time | 4 hours 22 min 21 sec |
CPU time | 16 hours 35 min 30 sec |
Validate state | Valid |
Credit | 464.92 |
Device peak FLOPS | 12.76 GFLOPS |
Application version | ATLAS Simulation v0.70 (native_mt) x86_64-pc-linux-gnu |
Peak working set size | 1.82 GB |
Peak swap size | 2.57 GB |
Peak disk usage | 826.54 MB |
<core_client_version>7.7.0</core_client_version> <![CDATA[ <stderr_txt> 16:09:51 (19560): wrapper (7.7.26015): starting 16:09:51 (19560): wrapper: running run_atlas (--nthreads 4) singularity image is /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sys.argv = ['run_atlas', '--nthreads', '4'] THREADS=4 Checking for CVMFS CVMFS is installed OS:CentOS Linux release 7.6.1810 (Core) This is not SLC6, need to run with Singularity.... Checking Singularity... Singularity is not installed, using version from CVMFS Testing the function of Singularity... Checking singularity with cmd:/cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 hostname Singularity Works... copy /home/grid/slots/0/shared/ATLAS.root_0 copy /home/grid/slots/0/shared/input.tar.gz copy /home/grid/slots/0/shared/RTE.tar.gz copy /home/grid/slots/0/shared/start_atlas.sh export ATHENA_PROC_NUMBER=4;start atlas job with grep: pandaJobData.out: No such file or directory cmd = /cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec --pwd /home/grid/slots/0 -B /cvmfs,/home /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sh start_atlas.sh > runtime_log 2> runtime_log.err running cmd return value is 0 Moving ./HITS.18722298._014158.pool.root.1 to shared/HITS.pool.root.1 *****************The last 100 lines of the pilot log****************** 2019-08-11 18:31:08,237 | INFO | retrieve | pilot.util.auxiliary | make_job_report | job summary report 2019-08-11 18:31:08,238 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-08-11 18:31:08,238 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4442733450 2019-08-11 18:31:08,238 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18722298 2019-08-11 18:31:08,238 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none) 2019-08-11 18:31:08,238 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE 2019-08-11 18:31:08,238 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished 2019-08-11 18:31:08,238 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0 2019-08-11 18:31:08,238 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0 2019-08-11 18:31:08,238 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag: 2019-08-11 18:31:08,238 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0 2019-08-11 18:31:08,238 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK 2019-08-11 18:31:08,238 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 59976 s 2019-08-11 18:31:08,238 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 200 2019-08-11 18:31:08,238 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0 2019-08-11 18:31:08,239 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 26235 2019-08-11 18:31:08,239 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: 26235 2019-08-11 18:31:08,239 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 4 2019-08-11 18:31:08,239 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False 2019-08-11 18:31:08,239 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-08-11 18:31:08,239 | INFO | retrieve | pilot.util.auxiliary | make_job_report | 2019-08-11 18:31:08,239 | INFO | retrieve | pilot.control.job | has_job_completed | job 4442733450 has completed 2019-08-11 18:31:08,239 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called 2019-08-11 18:31:08,245 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /home/grid/slots/0/PanDA_Pilot-4442733450 2019-08-11 18:31:09,251 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [26235] 2019-08-11 18:31:09,251 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 26235 2019-08-11 18:31:09,251 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes 2019-08-11 18:31:09,567 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 62 s) 2019-08-11 18:31:10,255 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes 2019-08-11 18:31:10,256 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=26235 2019-08-11 18:31:10,307 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [26235] (in reverse order) 2019-08-11 18:31:10,347 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s) 2019-08-11 18:31:10,348 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs 2019-08-11 18:31:10,348 | INFO | retrieve | pilot.control.job | retrieve | ready for new job 2019-08-11 18:31:10,348 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging No handlers could be found for logger "pilot.util.mpi" 2019-08-11 18:31:10,857 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1 2019-08-11 18:31:20,906 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1 2019-08-11 18:31:20,906 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /home/grid/slots/0 2019-08-11 18:31:20,944 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (36287021056 B) 2019-08-11 18:31:20,945 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job 2019-08-11 18:31:20,945 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished 2019-08-11 18:31:20,971 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended 2019-08-11 18:31:20,975 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished 2019-08-11 18:31:20,981 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration 2019-08-11 18:31:20,993 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration 2019-08-11 18:31:21,020 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set 2019-08-11 18:31:21,020 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished 2019-08-11 18:31:21,108 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set 2019-08-11 18:31:21,108 | DEBUG | job | pilot.control.job | control | [job] control thread has finished 2019-08-11 18:31:21,114 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished 2019-08-11 18:31:21,115 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 11 threads 2019-08-11 18:31:21,116 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139773872289536)>, <ExcThread(job_monitor, started 139772731324160)>, <ExcThread(queue_monitoring, started 139773100406528)>, <ExcThread(validate_post, started 139773108799232)>, <ExcThread(queue_monitor, started 139772714538752)>, <ExcThread(copytool_out, started 139773125584640)>, <ExcThread(failed_post, started 139773092013824)>, <ExcThread(create_data_payload, started 139773630838528)>, <ExcThread(execute_payloads, started 139773083621120)>, <ExcThread(data, started 139773639231232)>, <ExcThread(validate, started 139773647623936)>] 2019-08-11 18:31:21,185 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished 2019-08-11 18:31:21,295 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished 2019-08-11 18:31:21,317 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 9 threads 2019-08-11 18:31:21,317 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139773872289536)>, <ExcThread(job_monitor, started 139772731324160)>, <ExcThread(queue_monitoring, started 139773100406528)>, <ExcThread(queue_monitor, started 139772714538752)>, <ExcThread(copytool_out, started 139773125584640)>, <ExcThread(failed_post, started 139773092013824)>, <ExcThread(create_data_payload, started 139773630838528)>, <ExcThread(execute_payloads, started 139773083621120)>, <ExcThread(data, started 139773639231232)>] 2019-08-11 18:31:21,487 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set 2019-08-11 18:31:21,487 | DEBUG | data | pilot.control.data | control | [data] control thread has finished 2019-08-11 18:31:21,518 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 8 threads 2019-08-11 18:31:21,519 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139773872289536)>, <ExcThread(job_monitor, started 139772731324160)>, <ExcThread(queue_monitoring, started 139773100406528)>, <ExcThread(queue_monitor, started 139772714538752)>, <ExcThread(copytool_out, started 139773125584640)>, <ExcThread(failed_post, started 139773092013824)>, <ExcThread(create_data_payload, started 139773630838528)>, <ExcThread(execute_payloads, started 139773083621120)>] 2019-08-11 18:31:21,711 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished 2019-08-11 18:31:21,720 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 7 threads 2019-08-11 18:31:21,721 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139773872289536)>, <ExcThread(job_monitor, started 139772731324160)>, <ExcThread(queue_monitoring, started 139773100406528)>, <ExcThread(queue_monitor, started 139772714538752)>, <ExcThread(copytool_out, started 139773125584640)>, <ExcThread(failed_post, started 139773092013824)>, <ExcThread(create_data_payload, started 139773630838528)>] 2019-08-11 18:31:21,994 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished 2019-08-11 18:31:22,012 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished 2019-08-11 18:31:22,023 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 5 threads 2019-08-11 18:31:22,023 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139773872289536)>, <ExcThread(job_monitor, started 139772731324160)>, <ExcThread(queue_monitoring, started 139773100406528)>, <ExcThread(queue_monitor, started 139772714538752)>, <ExcThread(failed_post, started 139773092013824)>] 2019-08-11 18:31:22,050 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished 2019-08-11 18:31:22,124 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 4 threads 2019-08-11 18:31:22,124 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139773872289536)>, <ExcThread(job_monitor, started 139772731324160)>, <ExcThread(queue_monitoring, started 139773100406528)>, <ExcThread(queue_monitor, started 139772714538752)>] 2019-08-11 18:31:22,740 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration 2019-08-11 18:31:22,740 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished 2019-08-11 18:31:22,829 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 3 threads 2019-08-11 18:31:22,830 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139773872289536)>, <ExcThread(job_monitor, started 139772731324160)>, <ExcThread(queue_monitoring, started 139773100406528)>] 2019-08-11 18:31:23,982 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished 2019-08-11 18:31:24,038 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 2 threads 2019-08-11 18:31:24,039 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139773872289536)>, <ExcThread(job_monitor, started 139772731324160)>] 2019-08-11 18:32:11,171 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 124 s) 2019-08-11 18:32:11,171 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished 2019-08-11 18:32:11,171 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0) 2019-08-11 18:32:11,172 | INFO | MainThread | root | wrap_up | traces error code: 0 2019-08-11 18:32:11,172 | INFO | MainThread | root | wrap_up | pilot has finished 2019-08-11 18:32:11 UTC [wrapper] ==== pilot stdout END ==== 2019-08-11 18:32:11 UTC [wrapper] ==== wrapper stdout RESUME ==== 2019-08-11 18:32:11 UTC [wrapper] Pilot exit status: 0 2019-08-11 18:32:11 UTC [wrapper] STATUSCODE: 0 2019-08-11 18:32:11 UTC [wrapper] apfmon messages muted ---- find pandaID.out ---- total 44 -rw-------. 1 grid grid 11357 Jul 25 16:38 LICENSE drwx------. 14 grid grid 216 Aug 11 16:10 pilot -rwx------. 1 grid grid 20463 Jul 25 16:38 pilot.py -rw-------. 1 grid grid 8 Aug 7 13:02 PILOTVERSION -rw-------. 1 grid grid 2251 Jul 25 16:38 README.md -rw-------. 1 grid grid 221 Jul 25 16:38 TODO.md 2019-08-11 18:32:11 UTC [wrapper] Test setup, not cleaning 2019-08-11 18:32:11 UTC [wrapper] ==== wrapper stdout END ==== 2019-08-11 18:32:11 UTC [wrapper] ==== wrapper stderr END ==== ***************diag file************ runtimeenvironments=APPS/HEP/ATLAS-SITE; Processors=1 WallTime=15736.56s KernelTime=440.87s UserTime=59729.76s CPUUsage=382% MaxResidentMemory=1944564kB AverageResidentMemory=0kB AverageTotalMemory=0kB AverageUnsharedMemory=0kB AverageUnsharedStack=0kB AverageSharedMemory=0kB PageSize=4096B MajorPageFaults=458450 MinorPageFaults=18885343 Swaps=0 ForcedSwitches=6923917 WaitSwitches=9573890 Inputs=110779592 Outputs=963944 SocketReceived=0 SocketSent=0 Signals=0 nodename=David_Cameron@dcameron04.cern.ch exitcode=0 ******************************WorkDir*********************** total 285476 drwxrwx--x. 7 grid grid 4096 Aug 11 20:32 . drwxr-x--x. 3 grid grid 15 Aug 8 09:08 .. -rw-------. 1 grid grid 518 Aug 11 20:32 3LCMDmshaGvnShfckohDCDFpABFKDmABFKDmjVUYDmABFKDmL3ssrn.diag -rw-------. 1 grid grid 7408939 Aug 11 16:10 agis_ddmendpoints.json -rw-------. 1 grid grid 4506622 Aug 11 16:10 agis_schedconf.cvmfs.json drwx------. 2 grid grid 6 Aug 11 16:09 .alrb drwxr-xr-x. 3 grid grid 17 Aug 11 16:09 APPS drwxr-xr-x. 2 grid grid 6 Aug 11 16:10 .arc -rw-------. 1 grid grid 538 Aug 11 16:09 .asetup -rw-------. 1 grid grid 826 Aug 11 16:10 .asetup.save -rw-rw-r--. 1 grid grid 0 Aug 11 16:09 boinc_lockfile -rw-rw-r--. 1 grid grid 8192 Aug 11 20:31 boinc_mmap_file -rw-rw-r--. 1 grid grid 537 Aug 11 20:23 boinc_task_state.xml -rw-rw-r--. 1 grid grid 278052387 Aug 11 16:09 EVNT.18605754._000273.pool.root.1 -rw-------. 1 grid grid 75961 Aug 11 20:31 heartbeat.json -rw-rw-r--. 1 grid grid 5862 Aug 11 16:09 init_data.xml -rw-rw-r--. 1 grid grid 262338 Aug 11 16:09 input.tar.gz -rw-rw-r--. 1 grid grid 112 Aug 11 16:09 job.xml -rw-------. 1 grid grid 750101 Aug 11 20:32 log.18722298._014158.job.log.1 -rw-------. 1 grid grid 845487 Aug 11 20:30 log.18722298._014158.job.log.tgz.1 -rw-------. 1 grid grid 391 Aug 11 20:32 output.list -rw-------. 1 grid grid 2915 Aug 10 09:10 pandaJobData.out drwx------. 3 grid grid 174 Aug 7 13:02 pilot2 -rw-r--r--. 1 grid grid 253018 Aug 10 08:32 pilot2.tar.gz -rw-------. 1 grid grid 10041 Aug 11 20:32 pilotlog.txt -rw-r--r--. 1 grid grid 4468 Aug 10 09:10 queuedata.json -rw-rw-r--. 1 grid grid 815 Aug 11 16:09 RTE.tar.gz -rwxr-xr-x. 1 grid grid 8648 Aug 11 16:09 run_atlas -rwx------. 1 grid grid 15232 Aug 10 09:10 runpilot2-wrapper.sh -rw-rw-r--. 1 grid grid 692 Aug 11 20:32 runtime_log -rw-rw-r--. 1 grid grid 6807 Aug 11 20:32 runtime_log.err drwxrwx--x. 2 grid grid 131 Aug 11 20:32 shared -rw-rw-r--. 1 grid grid 8688 Aug 11 16:09 start_atlas.sh -rw-rw-r--. 1 grid grid 18241 Aug 11 20:32 stderr.txt -rw-rw-r--. 1 grid grid 107 Aug 11 16:09 wrapper_26015_x86_64-pc-linux-gnu -rw-rw-r--. 1 grid grid 28 Aug 11 20:31 wrapper_checkpoint.txt running start_atlas return value is 0 Parent exit 0 child process exit 0 20:32:11 (19560): run_atlas exited; CPU time 59730.134411 20:32:11 (19560): called boinc_finish(0) </stderr_txt> ]]>
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