Name | tm9LDmIA0GvnShfckohDCDFpABFKDmABFKDmKDAZDmABFKDmaLqfOo_0 |
Workunit | 1916249 |
Created | 11 Aug 2019, 10:22:22 UTC |
Sent | 11 Aug 2019, 13:09:44 UTC |
Report deadline | 18 Aug 2019, 13:09:44 UTC |
Received | 12 Aug 2019, 2:54:29 UTC |
Server state | Over |
Outcome | Success |
Client state | Done |
Exit status | 0 (0x00000000) |
Computer ID | 3911 |
Run time | 2 hours 57 min 0 sec |
CPU time | 11 hours 0 min 42 sec |
Validate state | Valid |
Credit | 313.66 |
Device peak FLOPS | 12.76 GFLOPS |
Application version | ATLAS Simulation v0.70 (native_mt) x86_64-pc-linux-gnu |
Peak working set size | 1.79 GB |
Peak swap size | 2.56 GB |
Peak disk usage | 600.45 MB |
<core_client_version>7.7.0</core_client_version> <![CDATA[ <stderr_txt> 00:57:09 (19358): wrapper (7.7.26015): starting 00:57:09 (19358): wrapper: running run_atlas (--nthreads 4) singularity image is /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sys.argv = ['run_atlas', '--nthreads', '4'] THREADS=4 Checking for CVMFS CVMFS is installed OS:CentOS Linux release 7.6.1810 (Core) This is not SLC6, need to run with Singularity.... Checking Singularity... Singularity is not installed, using version from CVMFS Testing the function of Singularity... Checking singularity with cmd:/cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 hostname Singularity Works... copy /home/grid/slots/0/shared/ATLAS.root_0 copy /home/grid/slots/0/shared/input.tar.gz copy /home/grid/slots/0/shared/RTE.tar.gz copy /home/grid/slots/0/shared/start_atlas.sh export ATHENA_PROC_NUMBER=4;start atlas job with grep: pandaJobData.out: No such file or directory cmd = /cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec --pwd /home/grid/slots/0 -B /cvmfs,/home /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sh start_atlas.sh > runtime_log 2> runtime_log.err running cmd return value is 0 Moving ./HITS.18722432._015444.pool.root.1 to shared/HITS.pool.root.1 *****************The last 100 lines of the pilot log****************** 2019-08-12 01:53:43,682 | DEBUG | queue_monitor | pilot.control.job | send_state | wrote heartbeat to file /home/grid/slots/0/heartbeat.json 2019-08-12 01:53:43,682 | INFO | queue_monitor | pilot.control.job | queue_monitor | job 4443053199 was dequeued from the monitored payloads queue 2019-08-12 01:53:44,110 | INFO | retrieve | pilot.util.auxiliary | make_job_report | 2019-08-12 01:53:44,110 | INFO | retrieve | pilot.util.auxiliary | make_job_report | job summary report 2019-08-12 01:53:44,110 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-08-12 01:53:44,110 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4443053199 2019-08-12 01:53:44,110 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18722432 2019-08-12 01:53:44,110 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none) 2019-08-12 01:53:44,110 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE 2019-08-12 01:53:44,110 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished 2019-08-12 01:53:44,110 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0 2019-08-12 01:53:44,110 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0 2019-08-12 01:53:44,110 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag: 2019-08-12 01:53:44,110 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0 2019-08-12 01:53:44,111 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK 2019-08-12 01:53:44,111 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 39811 s 2019-08-12 01:53:44,111 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 200 2019-08-12 01:53:44,111 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0 2019-08-12 01:53:44,111 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 26029 2019-08-12 01:53:44,111 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: 26029 2019-08-12 01:53:44,111 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 4 2019-08-12 01:53:44,111 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False 2019-08-12 01:53:44,111 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-08-12 01:53:44,111 | INFO | retrieve | pilot.util.auxiliary | make_job_report | 2019-08-12 01:53:44,111 | INFO | retrieve | pilot.control.job | has_job_completed | job 4443053199 has completed 2019-08-12 01:53:44,111 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called 2019-08-12 01:53:44,119 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /home/grid/slots/0/PanDA_Pilot-4443053199 2019-08-12 01:53:45,121 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [26029] 2019-08-12 01:53:45,121 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 26029 2019-08-12 01:53:45,121 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes 2019-08-12 01:53:46,126 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes 2019-08-12 01:53:46,127 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=26029 2019-08-12 01:53:46,186 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [26029] (in reverse order) 2019-08-12 01:53:46,233 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s) 2019-08-12 01:53:46,233 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs 2019-08-12 01:53:46,233 | INFO | retrieve | pilot.control.job | retrieve | ready for new job 2019-08-12 01:53:46,234 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging No handlers could be found for logger "pilot.util.mpi" 2019-08-12 01:53:46,745 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1 2019-08-12 01:53:56,776 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1 2019-08-12 01:53:56,777 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /home/grid/slots/0 2019-08-12 01:53:56,814 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (36072062976 B) 2019-08-12 01:53:56,814 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job 2019-08-12 01:53:56,814 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished 2019-08-12 01:53:56,870 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set 2019-08-12 01:53:56,870 | DEBUG | job | pilot.control.job | control | [job] control thread has finished 2019-08-12 01:53:56,906 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished 2019-08-12 01:53:56,911 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set 2019-08-12 01:53:56,911 | DEBUG | data | pilot.control.data | control | [data] control thread has finished 2019-08-12 01:53:56,935 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished 2019-08-12 01:53:57,007 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished 2019-08-12 01:53:57,129 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 11 threads 2019-08-12 01:53:57,130 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140442675582720)>, <ExcThread(payload, started 140442066740992)>, <ExcThread(job_monitor, started 140442049955584)>, <ExcThread(create_data_payload, started 140442434131712)>, <ExcThread(execute_payloads, started 140441647302400)>, <ExcThread(validate_pre, started 140442041562880)>, <ExcThread(queue_monitor, started 140441672480512)>, <ExcThread(validate, started 140442450917120)>, <ExcThread(monitor, started 140442033170176)>, <ExcThread(queue_monitoring, started 140442058348288)>, <ExcThread(copytool_out, started 140442425739008)>] 2019-08-12 01:53:57,182 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished 2019-08-12 01:53:57,432 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 10 threads 2019-08-12 01:53:57,432 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140442675582720)>, <ExcThread(payload, started 140442066740992)>, <ExcThread(job_monitor, started 140442049955584)>, <ExcThread(create_data_payload, started 140442434131712)>, <ExcThread(execute_payloads, started 140441647302400)>, <ExcThread(queue_monitor, started 140441672480512)>, <ExcThread(validate, started 140442450917120)>, <ExcThread(monitor, started 140442033170176)>, <ExcThread(queue_monitoring, started 140442058348288)>, <ExcThread(copytool_out, started 140442425739008)>] 2019-08-12 01:53:57,534 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished 2019-08-12 01:53:57,545 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished 2019-08-12 01:53:57,633 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended 2019-08-12 01:53:57,634 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 7 threads 2019-08-12 01:53:57,635 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140442675582720)>, <ExcThread(payload, started 140442066740992)>, <ExcThread(job_monitor, started 140442049955584)>, <ExcThread(queue_monitor, started 140441672480512)>, <ExcThread(validate, started 140442450917120)>, <ExcThread(queue_monitoring, started 140442058348288)>, <ExcThread(copytool_out, started 140442425739008)>] 2019-08-12 01:53:57,844 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished 2019-08-12 01:53:57,857 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration 2019-08-12 01:53:57,873 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set 2019-08-12 01:53:57,873 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished 2019-08-12 01:53:57,937 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 5 threads 2019-08-12 01:53:57,937 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140442675582720)>, <ExcThread(job_monitor, started 140442049955584)>, <ExcThread(queue_monitor, started 140441672480512)>, <ExcThread(queue_monitoring, started 140442058348288)>, <ExcThread(copytool_out, started 140442425739008)>] 2019-08-12 01:53:58,352 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration 2019-08-12 01:53:58,617 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration 2019-08-12 01:53:58,617 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished 2019-08-12 01:53:58,641 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 4 threads 2019-08-12 01:53:58,642 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140442675582720)>, <ExcThread(job_monitor, started 140442049955584)>, <ExcThread(queue_monitoring, started 140442058348288)>, <ExcThread(copytool_out, started 140442425739008)>] 2019-08-12 01:53:58,857 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished 2019-08-12 01:53:58,944 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 3 threads 2019-08-12 01:53:58,944 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140442675582720)>, <ExcThread(job_monitor, started 140442049955584)>, <ExcThread(queue_monitoring, started 140442058348288)>] 2019-08-12 01:54:01,353 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished 2019-08-12 01:54:01,361 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 2 threads 2019-08-12 01:54:01,361 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140442675582720)>, <ExcThread(job_monitor, started 140442049955584)>] 2019-08-12 01:54:07,207 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 62 s) 2019-08-12 01:54:07,207 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished 2019-08-12 01:54:07,301 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0) 2019-08-12 01:54:07,302 | INFO | MainThread | root | wrap_up | traces error code: 0 2019-08-12 01:54:07,303 | INFO | MainThread | root | wrap_up | pilot has finished 2019-08-12 01:54:07 UTC [wrapper] ==== pilot stdout END ==== 2019-08-12 01:54:07 UTC [wrapper] ==== wrapper stdout RESUME ==== 2019-08-12 01:54:07 UTC [wrapper] Pilot exit status: 0 2019-08-12 01:54:07 UTC [wrapper] STATUSCODE: 0 2019-08-12 01:54:07 UTC [wrapper] apfmon messages muted ---- find pandaID.out ---- total 44 -rw-------. 1 grid grid 11357 Jul 25 16:38 LICENSE drwx------. 14 grid grid 216 Aug 12 00:57 pilot -rwx------. 1 grid grid 20463 Jul 25 16:38 pilot.py -rw-------. 1 grid grid 8 Aug 7 13:02 PILOTVERSION -rw-------. 1 grid grid 2251 Jul 25 16:38 README.md -rw-------. 1 grid grid 221 Jul 25 16:38 TODO.md 2019-08-12 01:54:07 UTC [wrapper] Test setup, not cleaning 2019-08-12 01:54:07 UTC [wrapper] ==== wrapper stdout END ==== 2019-08-12 01:54:07 UTC [wrapper] ==== wrapper stderr END ==== ***************diag file************ runtimeenvironments=APPS/HEP/ATLAS-SITE; Processors=1 WallTime=10615.54s KernelTime=326.47s UserTime=39642.26s CPUUsage=376% MaxResidentMemory=1945220kB AverageResidentMemory=0kB AverageTotalMemory=0kB AverageUnsharedMemory=0kB AverageUnsharedStack=0kB AverageSharedMemory=0kB PageSize=4096B MajorPageFaults=360044 MinorPageFaults=15661158 Swaps=0 ForcedSwitches=4692314 WaitSwitches=7234119 Inputs=87203000 Outputs=726048 SocketReceived=0 SocketSent=0 Signals=0 nodename=David_Cameron@dcameron04.cern.ch exitcode=0 ******************************WorkDir*********************** total 229596 drwxrwx--x. 7 grid grid 4096 Aug 12 03:54 . drwxr-x--x. 3 grid grid 15 Aug 8 09:08 .. -rw-------. 1 grid grid 7408939 Aug 12 00:57 agis_ddmendpoints.json -rw-------. 1 grid grid 4506570 Aug 12 00:57 agis_schedconf.cvmfs.json drwx------. 2 grid grid 6 Aug 12 00:57 .alrb drwxr-xr-x. 3 grid grid 17 Aug 12 00:57 APPS drwxr-xr-x. 2 grid grid 6 Aug 12 00:57 .arc -rw-------. 1 grid grid 538 Aug 12 00:57 .asetup -rw-------. 1 grid grid 826 Aug 12 00:58 .asetup.save -rw-rw-r--. 1 grid grid 0 Aug 12 00:57 boinc_lockfile -rw-rw-r--. 1 grid grid 8192 Aug 12 03:53 boinc_mmap_file -rw-rw-r--. 1 grid grid 537 Aug 12 03:47 boinc_task_state.xml -rw-rw-r--. 1 grid grid 220957603 Aug 12 00:57 EVNT.18605781._000323.pool.root.1 -rw-------. 1 grid grid 106255 Aug 12 03:53 heartbeat.json -rw-rw-r--. 1 grid grid 5862 Aug 12 00:57 init_data.xml -rw-rw-r--. 1 grid grid 262350 Aug 12 00:57 input.tar.gz -rw-rw-r--. 1 grid grid 112 Aug 12 00:57 job.xml -rw-------. 1 grid grid 598276 Aug 12 03:54 log.18722432._015444.job.log.1 -rw-------. 1 grid grid 842679 Aug 12 03:53 log.18722432._015444.job.log.tgz.1 -rw-------. 1 grid grid 391 Aug 12 03:54 output.list -rw-------. 1 grid grid 2957 Aug 11 12:21 pandaJobData.out drwx------. 3 grid grid 174 Aug 7 13:02 pilot2 -rw-r--r--. 1 grid grid 253018 Aug 11 11:24 pilot2.tar.gz -rw-------. 1 grid grid 9355 Aug 12 03:54 pilotlog.txt -rw-r--r--. 1 grid grid 4468 Aug 11 12:21 queuedata.json -rw-rw-r--. 1 grid grid 815 Aug 12 00:57 RTE.tar.gz -rwxr-xr-x. 1 grid grid 8648 Aug 12 00:57 run_atlas -rwx------. 1 grid grid 15232 Aug 11 12:21 runpilot2-wrapper.sh -rw-rw-r--. 1 grid grid 692 Aug 12 03:54 runtime_log -rw-rw-r--. 1 grid grid 6807 Aug 12 03:54 runtime_log.err drwxrwx--x. 2 grid grid 131 Aug 12 03:54 shared -rw-rw-r--. 1 grid grid 8688 Aug 12 00:57 start_atlas.sh -rw-rw-r--. 1 grid grid 17860 Aug 12 03:54 stderr.txt -rw-------. 1 grid grid 517 Aug 12 03:54 tm9LDmIA0GvnShfckohDCDFpABFKDmABFKDmKDAZDmABFKDmaLqfOo.diag -rw-rw-r--. 1 grid grid 107 Aug 12 00:57 wrapper_26015_x86_64-pc-linux-gnu -rw-rw-r--. 1 grid grid 28 Aug 12 03:53 wrapper_checkpoint.txt running start_atlas return value is 0 Parent exit 0 child process exit 0 03:54:07 (19358): run_atlas exited; CPU time 39642.646522 03:54:07 (19358): called boinc_finish(0) </stderr_txt> ]]>
©2024 CERN