Name | AYoMDmkMhGvnShfckohDCDFpABFKDmABFKDmAUfYDmABFKDm9VVnvm_2 |
Workunit | 1915944 |
Created | 12 Aug 2019, 5:16:20 UTC |
Sent | 12 Aug 2019, 20:44:21 UTC |
Report deadline | 19 Aug 2019, 20:44:21 UTC |
Received | 13 Aug 2019, 11:31:02 UTC |
Server state | Over |
Outcome | Success |
Client state | Done |
Exit status | 0 (0x00000000) |
Computer ID | 4132 |
Run time | 2 hours 59 min 4 sec |
CPU time | 19 hours 44 min 8 sec |
Validate state | Valid |
Credit | 704.82 |
Device peak FLOPS | 28.34 GFLOPS |
Application version | ATLAS Simulation v0.71 (native_mt) x86_64-pc-linux-gnu |
Peak working set size | 1.85 GB |
Peak swap size | 2.56 GB |
Peak disk usage | 979.28 MB |
<core_client_version>7.6.31</core_client_version> <![CDATA[ <stderr_txt> 02:22:15 (52819): wrapper (7.7.26015): starting 02:22:15 (52819): wrapper: running run_atlas (--nthreads 8) singularity image is /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sys.argv = ['run_atlas', '--nthreads', '8'] THREADS=8 Checking for CVMFS CVMFS is installed OS:cat: /etc/redhat-release: No such file or directory This is not SLC6, need to run with Singularity.... Checking Singularity... Singularity is installed, version 2.4.2-dist Testing the function of Singularity... Checking singularity with cmd:singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 hostname Singularity Works... copy /var/lib/boinc2/slots/2/shared/RTE.tar.gz copy /var/lib/boinc2/slots/2/shared/ATLAS.root_0 copy /var/lib/boinc2/slots/2/shared/input.tar.gz copy /var/lib/boinc2/slots/2/shared/start_atlas.sh export ATHENA_PROC_NUMBER=8;start atlas job with PandaID=4442810966 cmd = singularity exec --pwd /var/lib/boinc2/slots/2 -B /cvmfs,/var /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sh start_atlas.sh > runtime_log 2> runtime_log.err running cmd return value is 0 Moving ./HITS.18722298._014758.pool.root.1 to shared/HITS.pool.root.1 *****************The last 100 lines of the pilot log****************** 2019-08-13 11:20:23,535 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18722298 2019-08-13 11:20:23,535 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none) 2019-08-13 11:20:23,535 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE 2019-08-13 11:20:23,535 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished 2019-08-13 11:20:23,536 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0 2019-08-13 11:20:23,536 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0 2019-08-13 11:20:23,536 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag: 2019-08-13 11:20:23,536 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0 2019-08-13 11:20:23,536 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK 2019-08-13 11:20:23,536 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 71633 s 2019-08-13 11:20:23,536 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 200 2019-08-13 11:20:23,536 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0 2019-08-13 11:20:23,536 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 23186 2019-08-13 11:20:23,536 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: 23186 2019-08-13 11:20:23,536 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 8 2019-08-13 11:20:23,536 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False 2019-08-13 11:20:23,537 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-08-13 11:20:23,537 | INFO | retrieve | pilot.util.auxiliary | make_job_report | 2019-08-13 11:20:23,537 | INFO | retrieve | pilot.control.job | has_job_completed | job 4442810966 has completed 2019-08-13 11:20:23,537 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called 2019-08-13 11:20:23,541 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /var/lib/boinc2/slots/2/PanDA_Pilot-4442810966 2019-08-13 11:20:24,543 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [23186] 2019-08-13 11:20:24,543 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 23186 2019-08-13 11:20:24,543 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes 2019-08-13 11:20:25,547 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes 2019-08-13 11:20:25,547 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=23186 2019-08-13 11:20:25,657 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [23186] (in reverse order) 2019-08-13 11:20:25,757 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s) 2019-08-13 11:20:25,757 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs 2019-08-13 11:20:25,757 | INFO | retrieve | pilot.control.job | retrieve | ready for new job 2019-08-13 11:20:25,757 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging No handlers could be found for logger "pilot.util.mpi" 2019-08-13 11:20:26,263 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1 2019-08-13 11:20:36,313 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1 2019-08-13 11:20:36,313 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /var/lib/boinc2/slots/2 2019-08-13 11:20:36,346 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (274643025920 B) 2019-08-13 11:20:36,346 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job 2019-08-13 11:20:36,346 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished 2019-08-13 11:20:36,371 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended 2019-08-13 11:20:36,380 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration 2019-08-13 11:20:36,424 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 15 threads 2019-08-13 11:20:36,424 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140448612517632)>, <ExcThread(job, started 140448397035264)>, <ExcThread(failed_post, started 140447729030912)>, <ExcThread(payload, started 140448291079936)>, <ExcThread(validate_pre, started 140447779387136)>, <ExcThread(job_monitor, started 140447762601728)>, <ExcThread(queue_monitoring, started 140447770994432)>, <ExcThread(data, started 140448307865344)>, <ExcThread(validate, started 140448316258048)>, <ExcThread(copytool_in, started 140447754209024)>, <ExcThread(copytool_out, started 140448274294528)>, <ExcThread(validate_post, started 140447745816320)>, <ExcThread(execute_payloads, started 140447242516224)>, <ExcThread(queue_monitor, started 140447737423616)>, <ExcThread(create_data_payload, started 140448299472640)>] 2019-08-13 11:20:36,437 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration 2019-08-13 11:20:36,619 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set 2019-08-13 11:20:36,619 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished 2019-08-13 11:20:36,726 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 14 threads 2019-08-13 11:20:36,726 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140448612517632)>, <ExcThread(job, started 140448397035264)>, <ExcThread(failed_post, started 140447729030912)>, <ExcThread(validate_pre, started 140447779387136)>, <ExcThread(job_monitor, started 140447762601728)>, <ExcThread(queue_monitoring, started 140447770994432)>, <ExcThread(data, started 140448307865344)>, <ExcThread(validate, started 140448316258048)>, <ExcThread(copytool_in, started 140447754209024)>, <ExcThread(copytool_out, started 140448274294528)>, <ExcThread(validate_post, started 140447745816320)>, <ExcThread(execute_payloads, started 140447242516224)>, <ExcThread(queue_monitor, started 140447737423616)>, <ExcThread(create_data_payload, started 140448299472640)>] 2019-08-13 11:20:37,079 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set 2019-08-13 11:20:37,079 | DEBUG | job | pilot.control.job | control | [job] control thread has finished 2019-08-13 11:20:37,101 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished 2019-08-13 11:20:37,160 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished 2019-08-13 11:20:37,227 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished 2019-08-13 11:20:37,228 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 10 threads 2019-08-13 11:20:37,228 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140448612517632)>, <ExcThread(failed_post, started 140447729030912)>, <ExcThread(validate_pre, started 140447779387136)>, <ExcThread(job_monitor, started 140447762601728)>, <ExcThread(queue_monitoring, started 140447770994432)>, <ExcThread(data, started 140448307865344)>, <ExcThread(copytool_in, started 140447754209024)>, <ExcThread(copytool_out, started 140448274294528)>, <ExcThread(queue_monitor, started 140447737423616)>, <ExcThread(create_data_payload, started 140448299472640)>] 2019-08-13 11:20:37,255 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished 2019-08-13 11:20:37,399 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set 2019-08-13 11:20:37,399 | DEBUG | data | pilot.control.data | control | [data] control thread has finished 2019-08-13 11:20:37,429 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 8 threads 2019-08-13 11:20:37,429 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140448612517632)>, <ExcThread(failed_post, started 140447729030912)>, <ExcThread(validate_pre, started 140447779387136)>, <ExcThread(job_monitor, started 140447762601728)>, <ExcThread(queue_monitoring, started 140447770994432)>, <ExcThread(copytool_in, started 140447754209024)>, <ExcThread(copytool_out, started 140448274294528)>, <ExcThread(queue_monitor, started 140447737423616)>] 2019-08-13 11:20:37,437 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished 2019-08-13 11:20:37,530 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 7 threads 2019-08-13 11:20:37,530 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140448612517632)>, <ExcThread(failed_post, started 140447729030912)>, <ExcThread(validate_pre, started 140447779387136)>, <ExcThread(job_monitor, started 140447762601728)>, <ExcThread(queue_monitoring, started 140447770994432)>, <ExcThread(copytool_in, started 140447754209024)>, <ExcThread(queue_monitor, started 140447737423616)>] 2019-08-13 11:20:37,551 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished 2019-08-13 11:20:37,631 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 6 threads 2019-08-13 11:20:37,631 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140448612517632)>, <ExcThread(failed_post, started 140447729030912)>, <ExcThread(validate_pre, started 140447779387136)>, <ExcThread(job_monitor, started 140447762601728)>, <ExcThread(queue_monitoring, started 140447770994432)>, <ExcThread(queue_monitor, started 140447737423616)>] 2019-08-13 11:20:37,665 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished 2019-08-13 11:20:37,732 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 5 threads 2019-08-13 11:20:37,732 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140448612517632)>, <ExcThread(failed_post, started 140447729030912)>, <ExcThread(job_monitor, started 140447762601728)>, <ExcThread(queue_monitoring, started 140447770994432)>, <ExcThread(queue_monitor, started 140447737423616)>] 2019-08-13 11:20:37,876 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished 2019-08-13 11:20:37,933 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 4 threads 2019-08-13 11:20:37,934 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140448612517632)>, <ExcThread(job_monitor, started 140447762601728)>, <ExcThread(queue_monitoring, started 140447770994432)>, <ExcThread(queue_monitor, started 140447737423616)>] 2019-08-13 11:20:38,021 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration 2019-08-13 11:20:38,021 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished 2019-08-13 11:20:38,034 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 3 threads 2019-08-13 11:20:38,035 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140448612517632)>, <ExcThread(job_monitor, started 140447762601728)>, <ExcThread(queue_monitoring, started 140447770994432)>] 2019-08-13 11:20:39,381 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished 2019-08-13 11:20:39,443 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 2 threads 2019-08-13 11:20:39,443 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140448612517632)>, <ExcThread(job_monitor, started 140447762601728)>] 2019-08-13 11:21:17,299 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 62 s) 2019-08-13 11:21:17,299 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished 2019-08-13 11:21:17,352 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0) 2019-08-13 11:21:17,352 | INFO | MainThread | root | wrap_up | traces error code: 0 2019-08-13 11:21:17,353 | INFO | MainThread | root | wrap_up | pilot has finished 2019-08-13 11:21:17 UTC [wrapper] ==== pilot stdout END ==== 2019-08-13 11:21:17 UTC [wrapper] ==== wrapper stdout RESUME ==== 2019-08-13 11:21:17 UTC [wrapper] Pilot exit status: 0 2019-08-13 11:21:17 UTC [wrapper] STATUSCODE: 0 2019-08-13 11:21:17 UTC [wrapper] apfmon messages muted ---- find pandaID.out ---- total 48 -rw-rw-r-- 1 320 320 11357 Jul 25 08:38 LICENSE drwxrwxr-x 14 320 320 4096 Aug 13 02:22 pilot -rwxrwxr-x 1 320 320 20463 Jul 25 08:38 pilot.py -rw-r--r-- 1 320 320 8 Aug 7 05:02 PILOTVERSION -rw-rw-r-- 1 320 320 2251 Jul 25 08:38 README.md -rw-rw-r-- 1 320 320 221 Jul 25 08:38 TODO.md 2019-08-13 11:21:17 UTC [wrapper] Test setup, not cleaning 2019-08-13 11:21:17 UTC [wrapper] ==== wrapper stdout END ==== 2019-08-13 11:21:17 UTC [wrapper] ==== wrapper stderr END ==== ***************diag file************ runtimeenvironments=APPS/HEP/ATLAS-SITE; Processors=1 WallTime=10740.95s KernelTime=751.33s UserTime=71047.89s CPUUsage=668% MaxResidentMemory=1963400kB AverageResidentMemory=0kB AverageTotalMemory=0kB AverageUnsharedMemory=0kB AverageUnsharedStack=0kB AverageSharedMemory=0kB PageSize=4096B MajorPageFaults=718921 MinorPageFaults=31507405 Swaps=0 ForcedSwitches=445314 WaitSwitches=10115605 Inputs=113057448 Outputs=952040 SocketReceived=0 SocketSent=0 Signals=0 nodename=wHewitt@d8 exitcode=0 ******************************WorkDir*********************** total 286280 drwxrwxrwx 7 root root 4096 Aug 13 05:21 . drwxrwxrwx 33 root root 4096 Aug 12 15:18 .. -rw------- 1 root root 7409065 Aug 13 02:22 agis_ddmendpoints.json -rw------- 1 root root 4517434 Aug 13 02:22 agis_schedconf.cvmfs.json drwx------ 2 root root 4096 Aug 13 02:22 .alrb drwxr-xr-x 3 root root 4096 Aug 13 02:22 APPS drwxr-xr-x 2 root root 4096 Aug 13 02:22 .arc -rw------- 1 root root 543 Aug 13 02:22 .asetup -rw------- 1 root root 829 Aug 13 02:23 .asetup.save -rw------- 1 root root 496 Aug 13 05:21 AYoMDmkMhGvnShfckohDCDFpABFKDmABFKDmAUfYDmABFKDm9VVnvm.diag -rw-r--r-- 1 root root 0 Aug 13 02:22 boinc_lockfile -rw-r--r-- 1 root root 8192 Aug 13 05:21 boinc_mmap_file -rw-r--r-- 1 root root 536 Aug 13 04:56 boinc_task_state.xml -rw-r--r-- 1 root root 278604528 Aug 13 02:22 EVNT.18605754._000285.pool.root.1 -rw------- 1 root root 72160 Aug 13 05:20 heartbeat.json -rw-r--r-- 1 root root 8513 Aug 13 02:22 init_data.xml -rw-r--r-- 1 root root 262343 Aug 13 02:22 input.tar.gz -rw-r--r-- 1 root root 112 Aug 13 02:22 job.xml -rw------- 1 root root 650860 Aug 13 05:21 log.18722298._014758.job.log.1 -rw------- 1 root root 1182058 Aug 13 05:20 log.18722298._014758.job.log.tgz.1 -rw------- 1 root root 391 Aug 13 05:21 output.list -rw------- 1 4871 1028 2915 Aug 10 08:17 pandaJobData.out drwxr-xr-x 3 320 320 4096 Aug 7 05:02 pilot2 -rw-r--r-- 1 root root 253018 Aug 10 07:29 pilot2.tar.gz -rw------- 1 root root 11876 Aug 13 05:21 pilotlog.txt -rw-r--r-- 1 root root 4468 Aug 10 08:17 queuedata.json -rw-r--r-- 1 root root 815 Aug 13 02:22 RTE.tar.gz -rwxr-xr-x 1 root root 8779 Aug 13 02:22 run_atlas -rwx------ 1 4871 1028 15232 Aug 10 08:17 runpilot2-wrapper.sh -rw-r--r-- 1 root root 692 Aug 13 05:21 runtime_log -rw-r--r-- 1 root root 6844 Aug 13 05:21 runtime_log.err drwxrwx--x 2 root root 4096 Aug 13 05:21 shared -rw-r--r-- 1 root root 8688 Aug 13 02:22 start_atlas.sh -rw-r--r-- 1 root root 19246 Aug 13 05:21 stderr.txt -rw-r--r-- 1 root root 107 Aug 13 02:22 wrapper_26015_x86_64-pc-linux-gnu -rw-r--r-- 1 root root 28 Aug 13 05:21 wrapper_checkpoint.txt running start_atlas return value is 0 Parent exit 0 child process exit 0 05:21:17 (52819): run_atlas exited; CPU time 71048.084000 05:21:17 (52819): called boinc_finish(0) </stderr_txt> ]]>
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