Name | ylvMDmVtaGvnShfckohDCDFpABFKDmABFKDm0rUYDmABFKDmpMv1em_3 |
Workunit | 1915840 |
Created | 12 Aug 2019, 6:54:13 UTC |
Sent | 12 Aug 2019, 19:41:35 UTC |
Report deadline | 19 Aug 2019, 19:41:35 UTC |
Received | 13 Aug 2019, 1:39:48 UTC |
Server state | Over |
Outcome | Success |
Client state | Done |
Exit status | 0 (0x00000000) |
Computer ID | 4132 |
Run time | 4 hours 17 min 18 sec |
CPU time | 1 days 3 hours 29 min 31 sec |
Validate state | Valid |
Credit | 1,012.74 |
Device peak FLOPS | 28.34 GFLOPS |
Application version | ATLAS Simulation v0.71 (native_mt) x86_64-pc-linux-gnu |
Peak working set size | 1.91 GB |
Peak swap size | 21.11 GB |
Peak disk usage | 773.93 MB |
<core_client_version>7.6.31</core_client_version> <![CDATA[ <stderr_txt> 15:18:37 (64260): wrapper (7.7.26015): starting 15:18:37 (64260): wrapper: running run_atlas (--nthreads 8) singularity image is /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sys.argv = ['run_atlas', '--nthreads', '8'] THREADS=8 Checking for CVMFS CVMFS is installed OS:cat: /etc/redhat-release: No such file or directory This is not SLC6, need to run with Singularity.... Checking Singularity... Singularity is installed, version 2.4.2-dist Testing the function of Singularity... Checking singularity with cmd:singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 hostname Singularity Works... copy /var/lib/boinc2/slots/30/shared/RTE.tar.gz copy /var/lib/boinc2/slots/30/shared/ATLAS.root_0 copy /var/lib/boinc2/slots/30/shared/input.tar.gz copy /var/lib/boinc2/slots/30/shared/start_atlas.sh export ATHENA_PROC_NUMBER=8;start atlas job with PandaID=4442733475 cmd = singularity exec --pwd /var/lib/boinc2/slots/30 -B /cvmfs,/var /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sh start_atlas.sh > runtime_log 2> runtime_log.err running cmd return value is 0 Moving ./HITS.18722298._014182.pool.root.1 to shared/HITS.pool.root.1 *****************The last 100 lines of the pilot log****************** 2019-08-13 01:35:28,131 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4442733475 2019-08-13 01:35:28,132 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18722298 2019-08-13 01:35:28,132 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none) 2019-08-13 01:35:28,132 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE 2019-08-13 01:35:28,132 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished 2019-08-13 01:35:28,132 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0 2019-08-13 01:35:28,132 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0 2019-08-13 01:35:28,132 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag: 2019-08-13 01:35:28,132 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0 2019-08-13 01:35:28,132 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK 2019-08-13 01:35:28,132 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 100042 s 2019-08-13 01:35:28,132 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 200 2019-08-13 01:35:28,132 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0 2019-08-13 01:35:28,132 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 11785 2019-08-13 01:35:28,132 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: 11785 2019-08-13 01:35:28,132 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 8 2019-08-13 01:35:28,133 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False 2019-08-13 01:35:28,133 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-08-13 01:35:28,133 | INFO | retrieve | pilot.util.auxiliary | make_job_report | 2019-08-13 01:35:28,133 | INFO | retrieve | pilot.control.job | has_job_completed | job 4442733475 has completed 2019-08-13 01:35:28,133 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called 2019-08-13 01:35:28,137 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /var/lib/boinc2/slots/30/PanDA_Pilot-4442733475 2019-08-13 01:35:29,139 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [11785] 2019-08-13 01:35:29,139 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 11785 2019-08-13 01:35:29,139 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes 2019-08-13 01:35:30,144 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes 2019-08-13 01:35:30,144 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=11785 2019-08-13 01:35:30,310 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [11785] (in reverse order) 2019-08-13 01:35:30,404 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s) 2019-08-13 01:35:30,405 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs 2019-08-13 01:35:30,405 | INFO | retrieve | pilot.control.job | retrieve | ready for new job 2019-08-13 01:35:30,405 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging No handlers could be found for logger "pilot.util.mpi" 2019-08-13 01:35:30,915 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1 2019-08-13 01:35:38,651 | INFO | monitor | pilot.control.monitor | control | 14964 s have passed since pilot start 2019-08-13 01:35:40,963 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1 2019-08-13 01:35:40,963 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /var/lib/boinc2/slots/30 2019-08-13 01:35:40,989 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (273648975872 B) 2019-08-13 01:35:40,989 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job 2019-08-13 01:35:40,989 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished 2019-08-13 01:35:41,008 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration 2019-08-13 01:35:41,355 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set 2019-08-13 01:35:41,355 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished 2019-08-13 01:35:41,365 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 15 threads 2019-08-13 01:35:41,365 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139668337977088)>, <ExcThread(job, started 139668121704192)>, <ExcThread(validate_post, started 139667471054592)>, <ExcThread(monitor, started 139667504625408)>, <ExcThread(job_monitor, started 139667496232704)>, <ExcThread(failed_post, started 139667462661888)>, <ExcThread(copytool_in, started 139667454269184)>, <ExcThread(queue_monitoring, started 139667487840000)>, <ExcThread(execute_payloads, started 139666967754496)>, <ExcThread(data, started 139668033103616)>, <ExcThread(copytool_out, started 139668007925504)>, <ExcThread(validate, started 139668041496320)>, <ExcThread(validate_pre, started 139667991140096)>, <ExcThread(queue_monitor, started 139667479447296)>, <ExcThread(create_data_payload, started 139668024710912)>] 2019-08-13 01:35:41,422 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished 2019-08-13 01:35:41,553 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set 2019-08-13 01:35:41,553 | DEBUG | data | pilot.control.data | control | [data] control thread has finished 2019-08-13 01:35:41,559 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set 2019-08-13 01:35:41,559 | DEBUG | job | pilot.control.job | control | [job] control thread has finished 2019-08-13 01:35:41,659 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended 2019-08-13 01:35:41,666 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 11 threads 2019-08-13 01:35:41,667 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139668337977088)>, <ExcThread(validate_post, started 139667471054592)>, <ExcThread(job_monitor, started 139667496232704)>, <ExcThread(failed_post, started 139667462661888)>, <ExcThread(copytool_in, started 139667454269184)>, <ExcThread(queue_monitoring, started 139667487840000)>, <ExcThread(execute_payloads, started 139666967754496)>, <ExcThread(copytool_out, started 139668007925504)>, <ExcThread(validate, started 139668041496320)>, <ExcThread(queue_monitor, started 139667479447296)>, <ExcThread(create_data_payload, started 139668024710912)>] 2019-08-13 01:35:41,979 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished 2019-08-13 01:35:42,071 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 10 threads 2019-08-13 01:35:42,071 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139668337977088)>, <ExcThread(validate_post, started 139667471054592)>, <ExcThread(job_monitor, started 139667496232704)>, <ExcThread(failed_post, started 139667462661888)>, <ExcThread(copytool_in, started 139667454269184)>, <ExcThread(queue_monitoring, started 139667487840000)>, <ExcThread(copytool_out, started 139668007925504)>, <ExcThread(validate, started 139668041496320)>, <ExcThread(queue_monitor, started 139667479447296)>, <ExcThread(create_data_payload, started 139668024710912)>] 2019-08-13 01:35:42,118 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration 2019-08-13 01:35:42,126 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished 2019-08-13 01:35:42,172 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 9 threads 2019-08-13 01:35:42,172 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139668337977088)>, <ExcThread(validate_post, started 139667471054592)>, <ExcThread(job_monitor, started 139667496232704)>, <ExcThread(copytool_in, started 139667454269184)>, <ExcThread(queue_monitoring, started 139667487840000)>, <ExcThread(copytool_out, started 139668007925504)>, <ExcThread(validate, started 139668041496320)>, <ExcThread(queue_monitor, started 139667479447296)>, <ExcThread(create_data_payload, started 139668024710912)>] 2019-08-13 01:35:42,279 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished 2019-08-13 01:35:42,306 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished 2019-08-13 01:35:42,310 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished 2019-08-13 01:35:42,374 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 6 threads 2019-08-13 01:35:42,374 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139668337977088)>, <ExcThread(validate_post, started 139667471054592)>, <ExcThread(job_monitor, started 139667496232704)>, <ExcThread(queue_monitoring, started 139667487840000)>, <ExcThread(copytool_out, started 139668007925504)>, <ExcThread(queue_monitor, started 139667479447296)>] 2019-08-13 01:35:42,502 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished 2019-08-13 01:35:42,575 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 5 threads 2019-08-13 01:35:42,576 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139668337977088)>, <ExcThread(job_monitor, started 139667496232704)>, <ExcThread(queue_monitoring, started 139667487840000)>, <ExcThread(copytool_out, started 139668007925504)>, <ExcThread(queue_monitor, started 139667479447296)>] 2019-08-13 01:35:42,607 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration 2019-08-13 01:35:42,607 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished 2019-08-13 01:35:42,676 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 4 threads 2019-08-13 01:35:42,677 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139668337977088)>, <ExcThread(job_monitor, started 139667496232704)>, <ExcThread(queue_monitoring, started 139667487840000)>, <ExcThread(copytool_out, started 139668007925504)>] 2019-08-13 01:35:43,118 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished 2019-08-13 01:35:43,181 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 3 threads 2019-08-13 01:35:43,181 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139668337977088)>, <ExcThread(job_monitor, started 139667496232704)>, <ExcThread(queue_monitoring, started 139667487840000)>] 2019-08-13 01:35:44,009 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished 2019-08-13 01:35:44,086 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 2 threads 2019-08-13 01:35:44,086 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139668337977088)>, <ExcThread(job_monitor, started 139667496232704)>] 2019-08-13 01:35:52,203 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 62 s) 2019-08-13 01:35:52,203 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished 2019-08-13 01:35:52,238 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0) 2019-08-13 01:35:52,239 | INFO | MainThread | root | wrap_up | traces error code: 0 2019-08-13 01:35:52,239 | INFO | MainThread | root | wrap_up | pilot has finished 2019-08-13 01:35:52 UTC [wrapper] ==== pilot stdout END ==== 2019-08-13 01:35:52 UTC [wrapper] ==== wrapper stdout RESUME ==== 2019-08-13 01:35:52 UTC [wrapper] Pilot exit status: 0 2019-08-13 01:35:52 UTC [wrapper] STATUSCODE: 0 2019-08-13 01:35:52 UTC [wrapper] apfmon messages muted ---- find pandaID.out ---- total 48 -rw-rw-r-- 1 320 320 11357 Jul 25 08:38 LICENSE drwxrwxr-x 14 320 320 4096 Aug 12 15:25 pilot -rwxrwxr-x 1 320 320 20463 Jul 25 08:38 pilot.py -rw-r--r-- 1 320 320 8 Aug 7 05:02 PILOTVERSION -rw-rw-r-- 1 320 320 2251 Jul 25 08:38 README.md -rw-rw-r-- 1 320 320 221 Jul 25 08:38 TODO.md 2019-08-13 01:35:52 UTC [wrapper] Test setup, not cleaning 2019-08-13 01:35:52 UTC [wrapper] ==== wrapper stdout END ==== 2019-08-13 01:35:52 UTC [wrapper] ==== wrapper stderr END ==== ***************diag file************ runtimeenvironments=APPS/HEP/ATLAS-SITE; Processors=1 WallTime=15333.34s KernelTime=1344.85s UserTime=98970.90s CPUUsage=654% MaxResidentMemory=2030264kB AverageResidentMemory=0kB AverageTotalMemory=0kB AverageUnsharedMemory=0kB AverageUnsharedStack=0kB AverageSharedMemory=0kB PageSize=4096B MajorPageFaults=775018 MinorPageFaults=21433333 Swaps=0 ForcedSwitches=2705622 WaitSwitches=10542047 Inputs=154444040 Outputs=995016 SocketReceived=0 SocketSent=0 Signals=0 nodename=wHewitt@d8 exitcode=0 ******************************WorkDir*********************** total 285580 drwxrwx--x 7 root root 4096 Aug 12 19:35 . drwxrwxrwx 33 root root 4096 Aug 12 15:18 .. -rw------- 1 root root 7409065 Aug 12 15:26 agis_ddmendpoints.json -rw------- 1 root root 4517832 Aug 12 15:26 agis_schedconf.cvmfs.json drwx------ 2 root root 4096 Aug 12 15:20 .alrb drwxr-xr-x 3 root root 4096 Aug 12 15:20 APPS drwxr-xr-x 2 root root 4096 Aug 12 15:25 .arc -rw------- 1 root root 544 Aug 12 15:22 .asetup -rw------- 1 root root 829 Aug 12 15:29 .asetup.save -rw-r--r-- 1 root root 0 Aug 12 15:18 boinc_lockfile -rw-r--r-- 1 root root 8192 Aug 12 19:35 boinc_mmap_file -rw-r--r-- 1 root root 538 Aug 12 19:10 boinc_task_state.xml -rw-r--r-- 1 root root 277669485 Aug 12 15:20 EVNT.18605754._000274.pool.root.1 -rw------- 1 root root 87596 Aug 12 19:35 heartbeat.json -rw-r--r-- 1 root root 8514 Aug 12 15:18 init_data.xml -rw-r--r-- 1 root root 262344 Aug 12 15:20 input.tar.gz -rw-r--r-- 1 root root 112 Aug 12 15:18 job.xml -rw------- 1 root root 823522 Aug 12 19:35 log.18722298._014182.job.log.1 -rw------- 1 root root 1206907 Aug 12 19:35 log.18722298._014182.job.log.tgz.1 -rw------- 1 root root 391 Aug 12 19:35 output.list -rw------- 1 4871 1028 2914 Aug 10 01:22 pandaJobData.out drwxr-xr-x 3 320 320 4096 Aug 7 05:02 pilot2 -rw-r--r-- 1 root root 253018 Aug 10 00:32 pilot2.tar.gz -rw------- 1 root root 11310 Aug 12 19:35 pilotlog.txt -rw-r--r-- 1 root root 4468 Aug 10 01:21 queuedata.json -rw-r--r-- 1 root root 815 Aug 12 15:20 RTE.tar.gz -rwxr-xr-x 1 root root 8779 Aug 12 15:18 run_atlas -rwx------ 1 4871 1028 15232 Aug 10 01:22 runpilot2-wrapper.sh -rw-r--r-- 1 root root 692 Aug 12 19:35 runtime_log -rw-r--r-- 1 root root 6871 Aug 12 19:35 runtime_log.err drwxrwx--x 2 root root 4096 Aug 12 19:35 shared -rw-r--r-- 1 root root 8688 Aug 12 15:20 start_atlas.sh -rw-r--r-- 1 root root 18836 Aug 12 19:35 stderr.txt -rw-r--r-- 1 root root 107 Aug 12 15:18 wrapper_26015_x86_64-pc-linux-gnu -rw-r--r-- 1 root root 28 Aug 12 19:35 wrapper_checkpoint.txt -rw------- 1 root root 498 Aug 12 19:35 ylvMDmVtaGvnShfckohDCDFpABFKDmABFKDm0rUYDmABFKDmpMv1em.diag running start_atlas return value is 0 Parent exit 0 child process exit 0 19:35:53 (64260): run_atlas exited; CPU time 98971.192000 19:35:53 (64260): called boinc_finish(0) </stderr_txt> ]]>
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