Name | m8iNDmLzCHvnShfckohDCDFpABFKDmABFKDmaOUZDmABFKDm8dvz8m_1 |
Workunit | 1916470 |
Created | 12 Aug 2019, 6:54:13 UTC |
Sent | 12 Aug 2019, 20:44:20 UTC |
Report deadline | 19 Aug 2019, 20:44:20 UTC |
Received | 13 Aug 2019, 2:01:36 UTC |
Server state | Over |
Outcome | Success |
Client state | Done |
Exit status | 0 (0x00000000) |
Computer ID | 4132 |
Run time | 2 hours 4 min 57 sec |
CPU time | 12 hours 20 min 10 sec |
Validate state | Valid |
Credit | 491.79 |
Device peak FLOPS | 28.34 GFLOPS |
Application version | ATLAS Simulation v0.71 (native_mt) x86_64-pc-linux-gnu |
Peak working set size | 1.86 GB |
Peak swap size | 2.54 GB |
Peak disk usage | 547.14 MB |
<core_client_version>7.6.31</core_client_version> <![CDATA[ <stderr_txt> 17:53:29 (13094): wrapper (7.7.26015): starting 17:53:29 (13094): wrapper: running run_atlas (--nthreads 8) singularity image is /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sys.argv = ['run_atlas', '--nthreads', '8'] THREADS=8 Checking for CVMFS CVMFS is installed OS:cat: /etc/redhat-release: No such file or directory This is not SLC6, need to run with Singularity.... Checking Singularity... Singularity is installed, version 2.4.2-dist Testing the function of Singularity... Checking singularity with cmd:singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 hostname Singularity Works... copy /var/lib/boinc2/slots/3/shared/RTE.tar.gz copy /var/lib/boinc2/slots/3/shared/ATLAS.root_0 copy /var/lib/boinc2/slots/3/shared/input.tar.gz copy /var/lib/boinc2/slots/3/shared/start_atlas.sh export ATHENA_PROC_NUMBER=8;start atlas job with PandaID=4443116390 cmd = singularity exec --pwd /var/lib/boinc2/slots/3 -B /cvmfs,/var /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sh start_atlas.sh > runtime_log 2> runtime_log.err running cmd return value is 0 Moving ./HITS.18722398._021125.pool.root.1 to shared/HITS.pool.root.1 *****************The last 100 lines of the pilot log****************** 2019-08-13 01:57:44,184 | DEBUG | queue_monitor | pilot.control.job | send_state | wrote heartbeat to file /var/lib/boinc2/slots/3/heartbeat.json 2019-08-13 01:57:44,184 | INFO | queue_monitor | pilot.control.job | queue_monitor | job 4443116390 was dequeued from the monitored payloads queue 2019-08-13 01:57:44,761 | INFO | retrieve | pilot.util.auxiliary | make_job_report | 2019-08-13 01:57:44,761 | INFO | retrieve | pilot.util.auxiliary | make_job_report | job summary report 2019-08-13 01:57:44,761 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-08-13 01:57:44,762 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4443116390 2019-08-13 01:57:44,762 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18722398 2019-08-13 01:57:44,762 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none) 2019-08-13 01:57:44,762 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE 2019-08-13 01:57:44,762 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished 2019-08-13 01:57:44,762 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0 2019-08-13 01:57:44,762 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0 2019-08-13 01:57:44,762 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag: 2019-08-13 01:57:44,762 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0 2019-08-13 01:57:44,762 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK 2019-08-13 01:57:44,763 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 44839 s 2019-08-13 01:57:44,763 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 200 2019-08-13 01:57:44,763 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0 2019-08-13 01:57:44,763 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 13896 2019-08-13 01:57:44,763 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: 13896 2019-08-13 01:57:44,763 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 8 2019-08-13 01:57:44,763 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False 2019-08-13 01:57:44,763 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-08-13 01:57:44,763 | INFO | retrieve | pilot.util.auxiliary | make_job_report | 2019-08-13 01:57:44,763 | INFO | retrieve | pilot.control.job | has_job_completed | job 4443116390 has completed 2019-08-13 01:57:44,763 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called 2019-08-13 01:57:44,769 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /var/lib/boinc2/slots/3/PanDA_Pilot-4443116390 2019-08-13 01:57:45,771 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [13896] 2019-08-13 01:57:45,771 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 13896 2019-08-13 01:57:45,771 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes 2019-08-13 01:57:46,775 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes 2019-08-13 01:57:46,776 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=13896 2019-08-13 01:57:46,898 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [13896] (in reverse order) 2019-08-13 01:57:46,988 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s) 2019-08-13 01:57:46,988 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs 2019-08-13 01:57:46,988 | INFO | retrieve | pilot.control.job | retrieve | ready for new job 2019-08-13 01:57:46,989 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging No handlers could be found for logger "pilot.util.mpi" 2019-08-13 01:57:47,493 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1 2019-08-13 01:57:57,543 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1 2019-08-13 01:57:57,543 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /var/lib/boinc2/slots/3 2019-08-13 01:57:57,573 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (273921605632 B) 2019-08-13 01:57:57,573 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job 2019-08-13 01:57:57,573 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished 2019-08-13 01:57:57,584 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration 2019-08-13 01:57:57,775 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished 2019-08-13 01:57:57,985 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished 2019-08-13 01:57:58,033 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 14 threads 2019-08-13 01:57:58,033 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139892394059520)>, <ExcThread(job, started 139892178577152)>, <ExcThread(create_data_payload, started 139892153399040)>, <ExcThread(validate_post, started 139891732092672)>, <ExcThread(data, started 139892161791744)>, <ExcThread(validate, started 139892170184448)>, <ExcThread(job_monitor, started 139891757270784)>, <ExcThread(monitor, started 139891774056192)>, <ExcThread(queue_monitor, started 139891748878080)>, <ExcThread(execute_payloads, started 139891170076416)>, <ExcThread(payload, started 139892136613632)>, <ExcThread(validate_pre, started 139891782448896)>, <ExcThread(copytool_out, started 139892145006336)>, <ExcThread(queue_monitoring, started 139892128220928)>] 2019-08-13 01:57:58,083 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished 2019-08-13 01:57:58,165 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished 2019-08-13 01:57:58,179 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set 2019-08-13 01:57:58,179 | DEBUG | data | pilot.control.data | control | [data] control thread has finished 2019-08-13 01:57:58,327 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished 2019-08-13 01:57:58,435 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 10 threads 2019-08-13 01:57:58,435 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139892394059520)>, <ExcThread(job, started 139892178577152)>, <ExcThread(create_data_payload, started 139892153399040)>, <ExcThread(job_monitor, started 139891757270784)>, <ExcThread(monitor, started 139891774056192)>, <ExcThread(queue_monitor, started 139891748878080)>, <ExcThread(execute_payloads, started 139891170076416)>, <ExcThread(payload, started 139892136613632)>, <ExcThread(copytool_out, started 139892145006336)>, <ExcThread(queue_monitoring, started 139892128220928)>] 2019-08-13 01:57:58,465 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished 2019-08-13 01:57:58,505 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended 2019-08-13 01:57:58,585 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished 2019-08-13 01:57:58,663 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set 2019-08-13 01:57:58,664 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished 2019-08-13 01:57:58,668 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 6 threads 2019-08-13 01:57:58,668 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139892394059520)>, <ExcThread(job, started 139892178577152)>, <ExcThread(create_data_payload, started 139892153399040)>, <ExcThread(job_monitor, started 139891757270784)>, <ExcThread(queue_monitor, started 139891748878080)>, <ExcThread(queue_monitoring, started 139892128220928)>] 2019-08-13 01:57:58,939 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set 2019-08-13 01:57:58,939 | DEBUG | job | pilot.control.job | control | [job] control thread has finished 2019-08-13 01:57:58,970 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 5 threads 2019-08-13 01:57:58,970 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139892394059520)>, <ExcThread(create_data_payload, started 139892153399040)>, <ExcThread(job_monitor, started 139891757270784)>, <ExcThread(queue_monitor, started 139891748878080)>, <ExcThread(queue_monitoring, started 139892128220928)>] 2019-08-13 01:57:59,071 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished 2019-08-13 01:57:59,126 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration 2019-08-13 01:57:59,171 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 4 threads 2019-08-13 01:57:59,172 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139892394059520)>, <ExcThread(job_monitor, started 139891757270784)>, <ExcThread(queue_monitor, started 139891748878080)>, <ExcThread(queue_monitoring, started 139892128220928)>] 2019-08-13 01:57:59,263 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration 2019-08-13 01:57:59,263 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished 2019-08-13 01:57:59,272 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 3 threads 2019-08-13 01:57:59,273 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139892394059520)>, <ExcThread(job_monitor, started 139891757270784)>, <ExcThread(queue_monitoring, started 139892128220928)>] 2019-08-13 01:58:02,127 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished 2019-08-13 01:58:02,191 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 2 threads 2019-08-13 01:58:02,191 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139892394059520)>, <ExcThread(job_monitor, started 139891757270784)>] 2019-08-13 01:58:23,539 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 62 s) 2019-08-13 01:58:23,539 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished 2019-08-13 01:58:23,606 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0) 2019-08-13 01:58:23,606 | INFO | MainThread | root | wrap_up | traces error code: 0 2019-08-13 01:58:23,606 | INFO | MainThread | root | wrap_up | pilot has finished 2019-08-13 01:58:23 UTC [wrapper] ==== pilot stdout END ==== 2019-08-13 01:58:23 UTC [wrapper] ==== wrapper stdout RESUME ==== 2019-08-13 01:58:23 UTC [wrapper] Pilot exit status: 0 2019-08-13 01:58:23 UTC [wrapper] STATUSCODE: 0 2019-08-13 01:58:23 UTC [wrapper] apfmon messages muted ---- find pandaID.out ---- total 48 -rw-rw-r-- 1 320 320 11357 Jul 25 08:38 LICENSE drwxrwxr-x 14 320 320 4096 Aug 12 17:54 pilot -rwxrwxr-x 1 320 320 20463 Jul 25 08:38 pilot.py -rw-r--r-- 1 320 320 8 Aug 7 05:02 PILOTVERSION -rw-rw-r-- 1 320 320 2251 Jul 25 08:38 README.md -rw-rw-r-- 1 320 320 221 Jul 25 08:38 TODO.md 2019-08-13 01:58:23 UTC [wrapper] Test setup, not cleaning 2019-08-13 01:58:23 UTC [wrapper] ==== wrapper stdout END ==== 2019-08-13 01:58:23 UTC [wrapper] ==== wrapper stderr END ==== ***************diag file************ runtimeenvironments=APPS/HEP/ATLAS-SITE; Processors=1 WallTime=7486.63s KernelTime=580.70s UserTime=44410.56s CPUUsage=600% MaxResidentMemory=1976268kB AverageResidentMemory=0kB AverageTotalMemory=0kB AverageUnsharedMemory=0kB AverageUnsharedStack=0kB AverageSharedMemory=0kB PageSize=4096B MajorPageFaults=495696 MinorPageFaults=16188027 Swaps=0 ForcedSwitches=886974 WaitSwitches=6883741 Inputs=89637696 Outputs=622240 SocketReceived=0 SocketSent=0 Signals=0 nodename=wHewitt@d8 exitcode=0 ******************************WorkDir*********************** total 215200 drwxrwxrwx 7 root root 4096 Aug 12 19:58 . drwxrwxrwx 33 root root 4096 Aug 12 15:18 .. -rw------- 1 root root 7409065 Aug 12 17:54 agis_ddmendpoints.json -rw------- 1 root root 4517692 Aug 12 17:54 agis_schedconf.cvmfs.json drwx------ 2 root root 4096 Aug 12 17:53 .alrb drwxr-xr-x 3 root root 4096 Aug 12 17:53 APPS drwxr-xr-x 2 root root 4096 Aug 12 17:54 .arc -rw------- 1 root root 543 Aug 12 17:53 .asetup -rw------- 1 root root 829 Aug 12 17:55 .asetup.save -rw-r--r-- 1 root root 0 Aug 12 17:53 boinc_lockfile -rw-r--r-- 1 root root 8192 Aug 12 19:57 boinc_mmap_file -rw-r--r-- 1 root root 536 Aug 12 19:38 boinc_task_state.xml -rw-r--r-- 1 root root 205896612 Aug 12 17:53 EVNT.18605775._000417.pool.root.1 -rw------- 1 root root 100153 Aug 12 19:57 heartbeat.json -rw-r--r-- 1 root root 8513 Aug 12 17:53 init_data.xml -rw-r--r-- 1 root root 262343 Aug 12 17:53 input.tar.gz -rw-r--r-- 1 root root 112 Aug 12 17:53 job.xml -rw------- 1 root root 537431 Aug 12 19:58 log.18722398._021125.job.log.1 -rw------- 1 root root 1185845 Aug 12 19:57 log.18722398._021125.job.log.tgz.1 -rw------- 1 root root 493 Aug 12 19:58 m8iNDmLzCHvnShfckohDCDFpABFKDmABFKDmaOUZDmABFKDm8dvz8m.diag -rw------- 1 root root 391 Aug 12 19:58 output.list -rw------- 1 4871 1028 2957 Aug 11 18:03 pandaJobData.out drwxr-xr-x 3 320 320 4096 Aug 7 05:02 pilot2 -rw-r--r-- 1 root root 253018 Aug 11 17:30 pilot2.tar.gz -rw------- 1 root root 9459 Aug 12 19:58 pilotlog.txt -rw-r--r-- 1 root root 4468 Aug 11 18:03 queuedata.json -rw-r--r-- 1 root root 815 Aug 12 17:53 RTE.tar.gz -rwxr-xr-x 1 root root 8779 Aug 12 17:53 run_atlas -rwx------ 1 4871 1028 15232 Aug 11 18:03 runpilot2-wrapper.sh -rw-r--r-- 1 root root 692 Aug 12 19:58 runtime_log -rw-r--r-- 1 root root 6844 Aug 12 19:58 runtime_log.err drwxrwx--x 2 root root 4096 Aug 12 19:58 shared -rw-r--r-- 1 root root 8688 Aug 12 17:53 start_atlas.sh -rw-r--r-- 1 root root 17779 Aug 12 19:58 stderr.txt -rw-r--r-- 1 root root 107 Aug 12 17:53 wrapper_26015_x86_64-pc-linux-gnu -rw-r--r-- 1 root root 27 Aug 12 19:57 wrapper_checkpoint.txt running start_atlas return value is 0 Parent exit 0 child process exit 0 19:58:24 (13094): run_atlas exited; CPU time 44410.800000 19:58:24 (13094): called boinc_finish(0) </stderr_txt> ]]>
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