Name | 08MODmBnLHvnShfckohDCDFpABFKDmABFKDmcXiZDmABFKDmaX8A2n_0 |
Workunit | 1916628 |
Created | 12 Aug 2019, 9:28:14 UTC |
Sent | 12 Aug 2019, 9:28:54 UTC |
Report deadline | 19 Aug 2019, 9:28:54 UTC |
Received | 12 Aug 2019, 20:41:59 UTC |
Server state | Over |
Outcome | Success |
Client state | Done |
Exit status | 0 (0x00000000) |
Computer ID | 3911 |
Run time | 2 hours 4 min 51 sec |
CPU time | 7 hours 33 min 40 sec |
Validate state | Valid |
Credit | 221.24 |
Device peak FLOPS | 12.76 GFLOPS |
Application version | ATLAS Simulation v0.71 (native_mt) x86_64-pc-linux-gnu |
Peak working set size | 1.79 GB |
Peak swap size | 2.55 GB |
Peak disk usage | 842.56 MB |
<core_client_version>7.7.0</core_client_version> <![CDATA[ <stderr_txt> 19:36:48 (28900): wrapper (7.7.26015): starting 19:36:48 (28900): wrapper: running run_atlas (--nthreads 4) singularity image is /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sys.argv = ['run_atlas', '--nthreads', '4'] THREADS=4 Checking for CVMFS CVMFS is installed OS:CentOS Linux release 7.6.1810 (Core) This is not SLC6, need to run with Singularity.... Checking Singularity... Singularity is not installed, using version from CVMFS Testing the function of Singularity... Checking singularity with cmd:/cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 hostname Singularity Works... copy /home/grid/slots/0/shared/ATLAS.root_0 copy /home/grid/slots/0/shared/input.tar.gz copy /home/grid/slots/0/shared/RTE.tar.gz copy /home/grid/slots/0/shared/start_atlas.sh export ATHENA_PROC_NUMBER=4;start atlas job with PandaID=4444766496 cmd = /cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec --pwd /home/grid/slots/0 -B /cvmfs,/home /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sh start_atlas.sh > runtime_log 2> runtime_log.err running cmd return value is 0 Moving ./HITS.18604991._044034.pool.root.1 to shared/HITS.pool.root.1 *****************The last 100 lines of the pilot log****************** 2019-08-12 19:40:53,914 | INFO | retrieve | pilot.util.auxiliary | make_job_report | 2019-08-12 19:40:53,914 | INFO | retrieve | pilot.util.auxiliary | make_job_report | job summary report 2019-08-12 19:40:53,914 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-08-12 19:40:53,914 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4444766496 2019-08-12 19:40:53,915 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18604991 2019-08-12 19:40:53,915 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none) 2019-08-12 19:40:53,915 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE 2019-08-12 19:40:53,915 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished 2019-08-12 19:40:53,915 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0 2019-08-12 19:40:53,915 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0 2019-08-12 19:40:53,915 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag: 2019-08-12 19:40:53,915 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0 2019-08-12 19:40:53,915 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK 2019-08-12 19:40:53,915 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 27341 s 2019-08-12 19:40:53,915 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 200 2019-08-12 19:40:53,915 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0 2019-08-12 19:40:53,915 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 3184 2019-08-12 19:40:53,916 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: 3184 2019-08-12 19:40:53,916 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 4 2019-08-12 19:40:53,916 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False 2019-08-12 19:40:53,916 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-08-12 19:40:53,916 | INFO | retrieve | pilot.util.auxiliary | make_job_report | 2019-08-12 19:40:53,916 | INFO | retrieve | pilot.control.job | has_job_completed | job 4444766496 has completed 2019-08-12 19:40:53,916 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called 2019-08-12 19:40:53,924 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /home/grid/slots/0/PanDA_Pilot-4444766496 2019-08-12 19:40:54,929 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [3184] 2019-08-12 19:40:54,929 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 3184 2019-08-12 19:40:54,929 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes 2019-08-12 19:40:55,933 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes 2019-08-12 19:40:55,934 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=3184 2019-08-12 19:40:55,981 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [3184] (in reverse order) 2019-08-12 19:40:56,024 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s) 2019-08-12 19:40:56,024 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs 2019-08-12 19:40:56,024 | INFO | retrieve | pilot.control.job | retrieve | ready for new job 2019-08-12 19:40:56,024 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging No handlers could be found for logger "pilot.util.mpi" 2019-08-12 19:40:56,534 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1 2019-08-12 19:41:06,584 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1 2019-08-12 19:41:06,584 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /home/grid/slots/0 2019-08-12 19:41:06,616 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (34128003072 B) 2019-08-12 19:41:06,617 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job 2019-08-12 19:41:06,617 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished 2019-08-12 19:41:06,635 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration 2019-08-12 19:41:06,654 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration 2019-08-12 19:41:06,772 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended 2019-08-12 19:41:06,796 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 15 threads 2019-08-12 19:41:06,796 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140579191699200)>, <ExcThread(job, started 140578975426304)>, <ExcThread(copytool_in, started 140578431952640)>, <ExcThread(queue_monitoring, started 140578925070080)>, <ExcThread(validate_pre, started 140578415167232)>, <ExcThread(create_data_payload, started 140578933462784)>, <ExcThread(validate_post, started 140578406774528)>, <ExcThread(payload, started 140578941855488)>, <ExcThread(execute_payloads, started 140577895081728)>, <ExcThread(copytool_out, started 140578950248192)>, <ExcThread(queue_monitor, started 140578389989120)>, <ExcThread(job_monitor, started 140578398381824)>, <ExcThread(data, started 140578967033600)>, <ExcThread(failed_post, started 140577903474432)>, <ExcThread(validate, started 140578958640896)>] 2019-08-12 19:41:06,816 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished 2019-08-12 19:41:06,831 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished 2019-08-12 19:41:07,094 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished 2019-08-12 19:41:07,146 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished 2019-08-12 19:41:07,178 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished 2019-08-12 19:41:07,198 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 10 threads 2019-08-12 19:41:07,198 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140579191699200)>, <ExcThread(job, started 140578975426304)>, <ExcThread(copytool_in, started 140578431952640)>, <ExcThread(queue_monitoring, started 140578925070080)>, <ExcThread(validate_post, started 140578406774528)>, <ExcThread(payload, started 140578941855488)>, <ExcThread(copytool_out, started 140578950248192)>, <ExcThread(queue_monitor, started 140578389989120)>, <ExcThread(job_monitor, started 140578398381824)>, <ExcThread(data, started 140578967033600)>] 2019-08-12 19:41:07,221 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set 2019-08-12 19:41:07,221 | DEBUG | job | pilot.control.job | control | [job] control thread has finished 2019-08-12 19:41:07,499 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 9 threads 2019-08-12 19:41:07,500 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140579191699200)>, <ExcThread(copytool_in, started 140578431952640)>, <ExcThread(queue_monitoring, started 140578925070080)>, <ExcThread(validate_post, started 140578406774528)>, <ExcThread(payload, started 140578941855488)>, <ExcThread(copytool_out, started 140578950248192)>, <ExcThread(queue_monitor, started 140578389989120)>, <ExcThread(job_monitor, started 140578398381824)>, <ExcThread(data, started 140578967033600)>] 2019-08-12 19:41:07,530 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set 2019-08-12 19:41:07,530 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished 2019-08-12 19:41:07,655 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished 2019-08-12 19:41:07,699 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set 2019-08-12 19:41:07,699 | DEBUG | data | pilot.control.data | control | [data] control thread has finished 2019-08-12 19:41:07,701 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 6 threads 2019-08-12 19:41:07,701 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140579191699200)>, <ExcThread(copytool_in, started 140578431952640)>, <ExcThread(queue_monitoring, started 140578925070080)>, <ExcThread(validate_post, started 140578406774528)>, <ExcThread(queue_monitor, started 140578389989120)>, <ExcThread(job_monitor, started 140578398381824)>] 2019-08-12 19:41:07,741 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished 2019-08-12 19:41:07,802 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 5 threads 2019-08-12 19:41:07,802 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140579191699200)>, <ExcThread(copytool_in, started 140578431952640)>, <ExcThread(queue_monitoring, started 140578925070080)>, <ExcThread(queue_monitor, started 140578389989120)>, <ExcThread(job_monitor, started 140578398381824)>] 2019-08-12 19:41:07,816 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished 2019-08-12 19:41:07,903 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 4 threads 2019-08-12 19:41:07,903 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140579191699200)>, <ExcThread(queue_monitoring, started 140578925070080)>, <ExcThread(queue_monitor, started 140578389989120)>, <ExcThread(job_monitor, started 140578398381824)>] 2019-08-12 19:41:08,387 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration 2019-08-12 19:41:08,388 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished 2019-08-12 19:41:08,407 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 3 threads 2019-08-12 19:41:08,407 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140579191699200)>, <ExcThread(queue_monitoring, started 140578925070080)>, <ExcThread(job_monitor, started 140578398381824)>] 2019-08-12 19:41:09,636 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished 2019-08-12 19:41:09,716 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 2 threads 2019-08-12 19:41:09,716 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140579191699200)>, <ExcThread(job_monitor, started 140578398381824)>] 2019-08-12 19:41:36,606 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 61 s) 2019-08-12 19:41:36,607 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished 2019-08-12 19:41:36,707 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0) 2019-08-12 19:41:36,708 | INFO | MainThread | root | wrap_up | traces error code: 0 2019-08-12 19:41:36,708 | INFO | MainThread | root | wrap_up | pilot has finished 2019-08-12 19:41:36 UTC [wrapper] ==== pilot stdout END ==== 2019-08-12 19:41:36 UTC [wrapper] ==== wrapper stdout RESUME ==== 2019-08-12 19:41:36 UTC [wrapper] Pilot exit status: 0 2019-08-12 19:41:36 UTC [wrapper] STATUSCODE: 0 2019-08-12 19:41:36 UTC [wrapper] apfmon messages muted ---- find pandaID.out ---- total 44 -rw-------. 1 grid grid 11357 Jul 25 16:38 LICENSE drwx------. 14 grid grid 216 Aug 12 19:37 pilot -rwx------. 1 grid grid 20463 Jul 25 16:38 pilot.py -rw-------. 1 grid grid 8 Aug 7 13:02 PILOTVERSION -rw-------. 1 grid grid 2251 Jul 25 16:38 README.md -rw-------. 1 grid grid 221 Jul 25 16:38 TODO.md 2019-08-12 19:41:37 UTC [wrapper] Test setup, not cleaning 2019-08-12 19:41:37 UTC [wrapper] ==== wrapper stdout END ==== 2019-08-12 19:41:37 UTC [wrapper] ==== wrapper stderr END ==== ***************diag file************ runtimeenvironments=APPS/HEP/ATLAS-SITE; Processors=1 WallTime=7485.51s KernelTime=251.02s UserTime=27219.85s CPUUsage=366% MaxResidentMemory=1945216kB AverageResidentMemory=0kB AverageTotalMemory=0kB AverageUnsharedMemory=0kB AverageUnsharedStack=0kB AverageSharedMemory=0kB PageSize=4096B MajorPageFaults=297527 MinorPageFaults=13504847 Swaps=0 ForcedSwitches=3300209 WaitSwitches=5809527 Inputs=72291224 Outputs=507544 SocketReceived=0 SocketSent=0 Signals=0 nodename=David_Cameron@dcameron04.cern.ch exitcode=0 ******************************WorkDir*********************** total 380260 drwxrwx--x. 7 grid grid 4096 Aug 12 21:41 . drwxr-x--x. 3 grid grid 15 Aug 8 09:08 .. -rw-------. 1 grid grid 516 Aug 12 21:41 08MODmBnLHvnShfckohDCDFpABFKDmABFKDmcXiZDmABFKDmaX8A2n.diag -rw-------. 1 grid grid 7409065 Aug 12 19:37 agis_ddmendpoints.json -rw-------. 1 grid grid 4525536 Aug 12 19:37 agis_schedconf.cvmfs.json drwx------. 2 grid grid 6 Aug 12 19:36 .alrb drwxr-xr-x. 3 grid grid 17 Aug 12 19:36 APPS drwxr-xr-x. 2 grid grid 6 Aug 12 19:37 .arc -rw-------. 1 grid grid 538 Aug 12 19:36 .asetup -rw-------. 1 grid grid 826 Aug 12 19:37 .asetup.save -rw-rw-r--. 1 grid grid 0 Aug 12 19:36 boinc_lockfile -rw-rw-r--. 1 grid grid 8192 Aug 12 21:41 boinc_mmap_file -rw-rw-r--. 1 grid grid 536 Aug 12 21:35 boinc_task_state.xml -rw-rw-r--. 1 grid grid 375450307 Aug 12 19:36 EVNT.17323818._001207.pool.root.1 -rw-------. 1 grid grid 54357 Aug 12 21:40 heartbeat.json -rw-rw-r--. 1 grid grid 5862 Aug 12 19:36 init_data.xml -rw-rw-r--. 1 grid grid 262355 Aug 12 19:36 input.tar.gz -rw-rw-r--. 1 grid grid 112 Aug 12 19:36 job.xml -rw-------. 1 grid grid 436817 Aug 12 21:41 log.18604991._044034.job.log.1 -rw-------. 1 grid grid 823570 Aug 12 21:40 log.18604991._044034.job.log.tgz.1 -rw-------. 1 grid grid 391 Aug 12 21:41 output.list -rw-------. 1 grid grid 2873 Aug 12 11:27 pandaJobData.out drwx------. 3 grid grid 174 Aug 7 13:02 pilot2 -rw-r--r--. 1 grid grid 253018 Aug 12 10:38 pilot2.tar.gz -rw-------. 1 grid grid 10233 Aug 12 21:41 pilotlog.txt -rw-r--r--. 1 grid grid 4468 Aug 12 11:20 queuedata.json -rw-rw-r--. 1 grid grid 815 Aug 12 19:36 RTE.tar.gz -rwxr-xr-x. 1 grid grid 8779 Aug 12 19:36 run_atlas -rwx------. 1 grid grid 15232 Aug 12 11:27 runpilot2-wrapper.sh -rw-rw-r--. 1 grid grid 692 Aug 12 21:41 runtime_log -rw-rw-r--. 1 grid grid 6807 Aug 12 21:41 runtime_log.err drwxrwx--x. 2 grid grid 131 Aug 12 21:41 shared -rw-rw-r--. 1 grid grid 8688 Aug 12 19:36 start_atlas.sh -rw-rw-r--. 1 grid grid 18336 Aug 12 21:41 stderr.txt -rw-rw-r--. 1 grid grid 107 Aug 12 19:36 wrapper_26015_x86_64-pc-linux-gnu -rw-rw-r--. 1 grid grid 27 Aug 12 21:41 wrapper_checkpoint.txt running start_atlas return value is 0 Parent exit 0 child process exit 0 21:41:37 (28900): run_atlas exited; CPU time 27220.261894 21:41:37 (28900): called boinc_finish(0) </stderr_txt> ]]>
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