Name | LS4NDmLIjGvnShfckohDCDFpABFKDmABFKDmKmiYDmABFKDmcnHtvm_2 |
Workunit | 1915977 |
Created | 12 Aug 2019, 11:01:43 UTC |
Sent | 12 Aug 2019, 20:44:20 UTC |
Report deadline | 19 Aug 2019, 20:44:20 UTC |
Received | 13 Aug 2019, 5:34:18 UTC |
Server state | Over |
Outcome | Success |
Client state | Done |
Exit status | 0 (0x00000000) |
Computer ID | 4132 |
Run time | 3 hours 52 min 45 sec |
CPU time | 1 days 0 hours 40 min 48 sec |
Validate state | Valid |
Credit | 916.11 |
Device peak FLOPS | 28.34 GFLOPS |
Application version | ATLAS Simulation v0.71 (native_mt) x86_64-pc-linux-gnu |
Peak working set size | 1.85 GB |
Peak swap size | 20.83 GB |
Peak disk usage | 773.29 MB |
<core_client_version>7.6.31</core_client_version> <![CDATA[ <stderr_txt> 19:35:59 (5264): wrapper (7.7.26015): starting 19:35:59 (5264): wrapper: running run_atlas (--nthreads 8) singularity image is /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sys.argv = ['run_atlas', '--nthreads', '8'] THREADS=8 Checking for CVMFS CVMFS is installed OS:cat: /etc/redhat-release: No such file or directory This is not SLC6, need to run with Singularity.... Checking Singularity... Singularity is installed, version 2.4.2-dist Testing the function of Singularity... Checking singularity with cmd:singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 hostname Singularity Works... copy /var/lib/boinc2/slots/1/shared/RTE.tar.gz copy /var/lib/boinc2/slots/1/shared/ATLAS.root_0 copy /var/lib/boinc2/slots/1/shared/input.tar.gz copy /var/lib/boinc2/slots/1/shared/start_atlas.sh export ATHENA_PROC_NUMBER=8;start atlas job with PandaID=4442814201 cmd = singularity exec --pwd /var/lib/boinc2/slots/1 -B /cvmfs,/var /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sh start_atlas.sh > runtime_log 2> runtime_log.err running cmd return value is 0 Moving ./HITS.18722298._014814.pool.root.1 to shared/HITS.pool.root.1 *****************The last 100 lines of the pilot log****************** 2019-08-13 05:28:13,966 | INFO | retrieve | pilot.util.auxiliary | make_job_report | 2019-08-13 05:28:13,966 | INFO | retrieve | pilot.util.auxiliary | make_job_report | job summary report 2019-08-13 05:28:13,966 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-08-13 05:28:13,966 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4442814201 2019-08-13 05:28:13,966 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18722298 2019-08-13 05:28:13,966 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none) 2019-08-13 05:28:13,967 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE 2019-08-13 05:28:13,967 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished 2019-08-13 05:28:13,967 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0 2019-08-13 05:28:13,967 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0 2019-08-13 05:28:13,967 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag: 2019-08-13 05:28:13,967 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0 2019-08-13 05:28:13,967 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK 2019-08-13 05:28:13,967 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 89615 s 2019-08-13 05:28:13,967 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 200 2019-08-13 05:28:13,967 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0 2019-08-13 05:28:13,967 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 67811 2019-08-13 05:28:13,968 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: 67811 2019-08-13 05:28:13,968 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 8 2019-08-13 05:28:13,968 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False 2019-08-13 05:28:13,968 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-08-13 05:28:13,968 | INFO | retrieve | pilot.util.auxiliary | make_job_report | 2019-08-13 05:28:13,968 | INFO | retrieve | pilot.control.job | has_job_completed | job 4442814201 has completed 2019-08-13 05:28:13,968 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called 2019-08-13 05:28:13,973 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /var/lib/boinc2/slots/1/PanDA_Pilot-4442814201 2019-08-13 05:28:14,979 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [67811] 2019-08-13 05:28:14,979 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 67811 2019-08-13 05:28:14,979 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes 2019-08-13 05:28:15,984 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes 2019-08-13 05:28:15,984 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=67811 2019-08-13 05:28:16,158 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [67811] (in reverse order) 2019-08-13 05:28:16,254 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s) 2019-08-13 05:28:16,255 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs 2019-08-13 05:28:16,255 | INFO | retrieve | pilot.control.job | retrieve | ready for new job 2019-08-13 05:28:16,255 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging No handlers could be found for logger "pilot.util.mpi" 2019-08-13 05:28:16,763 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1 2019-08-13 05:28:26,811 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1 2019-08-13 05:28:26,811 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /var/lib/boinc2/slots/1 2019-08-13 05:28:26,844 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (274662948864 B) 2019-08-13 05:28:26,845 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job 2019-08-13 05:28:26,845 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished 2019-08-13 05:28:26,851 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended 2019-08-13 05:28:26,880 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration 2019-08-13 05:28:26,971 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished 2019-08-13 05:28:27,009 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 14 threads 2019-08-13 05:28:27,009 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140662415279872)>, <ExcThread(job, started 140662199797504)>, <ExcThread(validate, started 140662191404800)>, <ExcThread(execute_payloads, started 140661630158592)>, <ExcThread(job_monitor, started 140661604980480)>, <ExcThread(data, started 140662183012096)>, <ExcThread(queue_monitoring, started 140661655336704)>, <ExcThread(validate_post, started 140662141048576)>, <ExcThread(queue_monitor, started 140661051356928)>, <ExcThread(create_data_payload, started 140661638551296)>, <ExcThread(validate_pre, started 140662157833984)>, <ExcThread(payload, started 140662166226688)>, <ExcThread(copytool_out, started 140662174619392)>, <ExcThread(copytool_in, started 140661621765888)>] 2019-08-13 05:28:27,219 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished 2019-08-13 05:28:27,295 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished 2019-08-13 05:28:27,350 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished 2019-08-13 05:28:27,411 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 11 threads 2019-08-13 05:28:27,412 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140662415279872)>, <ExcThread(job, started 140662199797504)>, <ExcThread(validate, started 140662191404800)>, <ExcThread(job_monitor, started 140661604980480)>, <ExcThread(data, started 140662183012096)>, <ExcThread(queue_monitoring, started 140661655336704)>, <ExcThread(queue_monitor, started 140661051356928)>, <ExcThread(create_data_payload, started 140661638551296)>, <ExcThread(payload, started 140662166226688)>, <ExcThread(copytool_out, started 140662174619392)>, <ExcThread(copytool_in, started 140661621765888)>] 2019-08-13 05:28:27,451 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished 2019-08-13 05:28:27,537 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set 2019-08-13 05:28:27,537 | DEBUG | job | pilot.control.job | control | [job] control thread has finished 2019-08-13 05:28:27,745 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 9 threads 2019-08-13 05:28:27,745 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140662415279872)>, <ExcThread(job_monitor, started 140661604980480)>, <ExcThread(data, started 140662183012096)>, <ExcThread(queue_monitoring, started 140661655336704)>, <ExcThread(queue_monitor, started 140661051356928)>, <ExcThread(create_data_payload, started 140661638551296)>, <ExcThread(payload, started 140662166226688)>, <ExcThread(copytool_out, started 140662174619392)>, <ExcThread(copytool_in, started 140661621765888)>] 2019-08-13 05:28:27,789 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set 2019-08-13 05:28:27,789 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished 2019-08-13 05:28:27,883 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished 2019-08-13 05:28:27,899 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set 2019-08-13 05:28:27,899 | DEBUG | data | pilot.control.data | control | [data] control thread has finished 2019-08-13 05:28:27,910 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 6 threads 2019-08-13 05:28:27,910 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140662415279872)>, <ExcThread(job_monitor, started 140661604980480)>, <ExcThread(queue_monitoring, started 140661655336704)>, <ExcThread(queue_monitor, started 140661051356928)>, <ExcThread(create_data_payload, started 140661638551296)>, <ExcThread(copytool_out, started 140662174619392)>] 2019-08-13 05:28:28,238 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration 2019-08-13 05:28:28,343 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished 2019-08-13 05:28:28,415 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 5 threads 2019-08-13 05:28:28,416 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140662415279872)>, <ExcThread(job_monitor, started 140661604980480)>, <ExcThread(queue_monitoring, started 140661655336704)>, <ExcThread(queue_monitor, started 140661051356928)>, <ExcThread(copytool_out, started 140662174619392)>] 2019-08-13 05:28:28,453 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration 2019-08-13 05:28:28,454 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished 2019-08-13 05:28:28,517 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 4 threads 2019-08-13 05:28:28,517 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140662415279872)>, <ExcThread(job_monitor, started 140661604980480)>, <ExcThread(queue_monitoring, started 140661655336704)>, <ExcThread(copytool_out, started 140662174619392)>] 2019-08-13 05:28:29,238 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished 2019-08-13 05:28:29,322 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 3 threads 2019-08-13 05:28:29,322 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140662415279872)>, <ExcThread(job_monitor, started 140661604980480)>, <ExcThread(queue_monitoring, started 140661655336704)>] 2019-08-13 05:28:29,881 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished 2019-08-13 05:28:29,926 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 2 threads 2019-08-13 05:28:29,927 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140662415279872)>, <ExcThread(job_monitor, started 140661604980480)>] 2019-08-13 05:28:41,683 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 61 s) 2019-08-13 05:28:41,683 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished 2019-08-13 05:28:41,696 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0) 2019-08-13 05:28:41,697 | INFO | MainThread | root | wrap_up | traces error code: 0 2019-08-13 05:28:41,697 | INFO | MainThread | root | wrap_up | pilot has finished 2019-08-13 05:28:41 UTC [wrapper] ==== pilot stdout END ==== 2019-08-13 05:28:41 UTC [wrapper] ==== wrapper stdout RESUME ==== 2019-08-13 05:28:41 UTC [wrapper] Pilot exit status: 0 2019-08-13 05:28:41 UTC [wrapper] STATUSCODE: 0 2019-08-13 05:28:41 UTC [wrapper] apfmon messages muted ---- find pandaID.out ---- total 48 -rw-rw-r-- 1 320 320 11357 Jul 25 08:38 LICENSE drwxrwxr-x 14 320 320 4096 Aug 12 19:36 pilot -rwxrwxr-x 1 320 320 20463 Jul 25 08:38 pilot.py -rw-r--r-- 1 320 320 8 Aug 7 05:02 PILOTVERSION -rw-rw-r-- 1 320 320 2251 Jul 25 08:38 README.md -rw-rw-r-- 1 320 320 221 Jul 25 08:38 TODO.md 2019-08-13 05:28:41 UTC [wrapper] Test setup, not cleaning 2019-08-13 05:28:41 UTC [wrapper] ==== wrapper stdout END ==== 2019-08-13 05:28:41 UTC [wrapper] ==== wrapper stderr END ==== ***************diag file************ runtimeenvironments=APPS/HEP/ATLAS-SITE; Processors=1 WallTime=13955.37s KernelTime=990.79s UserTime=88848.33s CPUUsage=643% MaxResidentMemory=1978376kB AverageResidentMemory=0kB AverageTotalMemory=0kB AverageUnsharedMemory=0kB AverageUnsharedStack=0kB AverageSharedMemory=0kB PageSize=4096B MajorPageFaults=952371 MinorPageFaults=24857644 Swaps=0 ForcedSwitches=924655 WaitSwitches=11297125 Inputs=129509024 Outputs=977024 SocketReceived=0 SocketSent=0 Signals=0 nodename=wHewitt@d8 exitcode=0 ******************************WorkDir*********************** total 287364 drwxrwxrwx 7 root root 4096 Aug 12 23:28 . drwxrwxrwx 33 root root 4096 Aug 12 15:18 .. -rw------- 1 root root 7409065 Aug 12 19:36 agis_ddmendpoints.json -rw------- 1 root root 4517698 Aug 12 19:36 agis_schedconf.cvmfs.json drwx------ 2 root root 4096 Aug 12 19:36 .alrb drwxr-xr-x 3 root root 4096 Aug 12 19:36 APPS drwxr-xr-x 2 root root 4096 Aug 12 19:36 .arc -rw------- 1 root root 543 Aug 12 19:36 .asetup -rw------- 1 root root 829 Aug 12 19:37 .asetup.save -rw-r--r-- 1 root root 0 Aug 12 19:35 boinc_lockfile -rw-r--r-- 1 root root 8192 Aug 12 23:28 boinc_mmap_file -rw-r--r-- 1 root root 538 Aug 12 23:10 boinc_task_state.xml -rw-r--r-- 1 root root 279544282 Aug 12 19:36 EVNT.18605754._000286.pool.root.1 -rw------- 1 root root 82893 Aug 12 23:28 heartbeat.json -rw-r--r-- 1 root root 8513 Aug 12 19:35 init_data.xml -rw-r--r-- 1 root root 262347 Aug 12 19:36 input.tar.gz -rw-r--r-- 1 root root 112 Aug 12 19:35 job.xml -rw------- 1 root root 792662 Aug 12 23:28 log.18722298._014814.job.log.1 -rw------- 1 root root 1194950 Aug 12 23:28 log.18722298._014814.job.log.tgz.1 -rw------- 1 root root 496 Aug 12 23:28 LS4NDmLIjGvnShfckohDCDFpABFKDmABFKDmKmiYDmABFKDmcnHtvm.diag -rw------- 1 root root 391 Aug 12 23:28 output.list -rw------- 1 4871 1028 2915 Aug 10 10:21 pandaJobData.out drwxr-xr-x 3 320 320 4096 Aug 7 05:02 pilot2 -rw-r--r-- 1 root root 253018 Aug 10 09:33 pilot2.tar.gz -rw------- 1 root root 10255 Aug 12 23:28 pilotlog.txt -rw-r--r-- 1 root root 4468 Aug 10 10:21 queuedata.json -rw-r--r-- 1 root root 815 Aug 12 19:36 RTE.tar.gz -rwxr-xr-x 1 root root 8779 Aug 12 19:35 run_atlas -rwx------ 1 4871 1028 15232 Aug 10 10:21 runpilot2-wrapper.sh -rw-r--r-- 1 root root 692 Aug 12 23:28 runtime_log -rw-r--r-- 1 root root 6844 Aug 12 23:28 runtime_log.err drwxrwx--x 2 root root 4096 Aug 12 23:28 shared -rw-r--r-- 1 root root 8688 Aug 12 19:36 start_atlas.sh -rw-r--r-- 1 root root 18207 Aug 12 23:28 stderr.txt -rw-r--r-- 1 root root 107 Aug 12 19:35 wrapper_26015_x86_64-pc-linux-gnu -rw-r--r-- 1 root root 28 Aug 12 23:28 wrapper_checkpoint.txt running start_atlas return value is 0 Parent exit 0 child process exit 0 23:28:42 (5264): run_atlas exited; CPU time 88848.568000 23:28:42 (5264): called boinc_finish(0) </stderr_txt> ]]>
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