Name | EPHKDmIjSHvnShfckohDCDFpABFKDmABFKDmBftZDmABFKDmlRW8cn_0 |
Workunit | 1916767 |
Created | 12 Aug 2019, 16:52:08 UTC |
Sent | 12 Aug 2019, 19:42:47 UTC |
Report deadline | 19 Aug 2019, 19:42:47 UTC |
Received | 13 Aug 2019, 4:49:32 UTC |
Server state | Over |
Outcome | Success |
Client state | Done |
Exit status | 0 (0x00000000) |
Computer ID | 4132 |
Run time | 4 hours 3 min 9 sec |
CPU time | 1 days 1 hours 38 min 32 sec |
Validate state | Valid |
Credit | 957.03 |
Device peak FLOPS | 28.34 GFLOPS |
Application version | ATLAS Simulation v0.71 (native_mt) x86_64-pc-linux-gnu |
Peak working set size | 1.84 GB |
Peak swap size | 21.87 GB |
Peak disk usage | 771.20 MB |
<core_client_version>7.6.31</core_client_version> <![CDATA[ <stderr_txt> 18:41:58 (56849): wrapper (7.7.26015): starting 18:41:58 (56849): wrapper: running run_atlas (--nthreads 8) singularity image is /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sys.argv = ['run_atlas', '--nthreads', '8'] THREADS=8 Checking for CVMFS CVMFS is installed OS:cat: /etc/redhat-release: No such file or directory This is not SLC6, need to run with Singularity.... Checking Singularity... Singularity is installed, version 2.4.2-dist Testing the function of Singularity... Checking singularity with cmd:singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 hostname Singularity Works... copy /var/lib/boinc2/slots/6/shared/RTE.tar.gz copy /var/lib/boinc2/slots/6/shared/ATLAS.root_0 copy /var/lib/boinc2/slots/6/shared/input.tar.gz copy /var/lib/boinc2/slots/6/shared/start_atlas.sh export ATHENA_PROC_NUMBER=8;start atlas job with PandaID=4443172482 cmd = singularity exec --pwd /var/lib/boinc2/slots/6 -B /cvmfs,/var /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sh start_atlas.sh > runtime_log 2> runtime_log.err running cmd return value is 0 Moving ./HITS.18722298._021016.pool.root.1 to shared/HITS.pool.root.1 *****************The last 100 lines of the pilot log****************** 2019-08-13 04:44:35,507 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-08-13 04:44:35,507 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4443172482 2019-08-13 04:44:35,507 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18722298 2019-08-13 04:44:35,507 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none) 2019-08-13 04:44:35,507 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE 2019-08-13 04:44:35,507 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished 2019-08-13 04:44:35,507 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0 2019-08-13 04:44:35,508 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0 2019-08-13 04:44:35,508 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag: 2019-08-13 04:44:35,508 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0 2019-08-13 04:44:35,508 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK 2019-08-13 04:44:35,508 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 93142 s 2019-08-13 04:44:35,508 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 200 2019-08-13 04:44:35,508 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0 2019-08-13 04:44:35,508 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 69114 2019-08-13 04:44:35,508 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: 69114 2019-08-13 04:44:35,509 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 8 2019-08-13 04:44:35,509 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False 2019-08-13 04:44:35,509 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-08-13 04:44:35,509 | INFO | retrieve | pilot.util.auxiliary | make_job_report | 2019-08-13 04:44:35,509 | INFO | retrieve | pilot.control.job | has_job_completed | job 4443172482 has completed 2019-08-13 04:44:35,509 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called 2019-08-13 04:44:35,515 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /var/lib/boinc2/slots/6/PanDA_Pilot-4443172482 2019-08-13 04:44:36,518 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [69114] 2019-08-13 04:44:36,519 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 69114 2019-08-13 04:44:36,519 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes 2019-08-13 04:44:37,523 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes 2019-08-13 04:44:37,523 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=69114 2019-08-13 04:44:37,678 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [69114] (in reverse order) 2019-08-13 04:44:37,774 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s) 2019-08-13 04:44:37,774 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs 2019-08-13 04:44:37,775 | INFO | retrieve | pilot.control.job | retrieve | ready for new job 2019-08-13 04:44:37,775 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging No handlers could be found for logger "pilot.util.mpi" 2019-08-13 04:44:38,279 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1 2019-08-13 04:44:48,327 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1 2019-08-13 04:44:48,327 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /var/lib/boinc2/slots/6 2019-08-13 04:44:48,356 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (273002004480 B) 2019-08-13 04:44:48,356 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job 2019-08-13 04:44:48,356 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished 2019-08-13 04:44:48,364 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration 2019-08-13 04:44:48,375 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration 2019-08-13 04:44:48,453 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished 2019-08-13 04:44:48,539 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set 2019-08-13 04:44:48,539 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished 2019-08-13 04:44:48,646 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 14 threads 2019-08-13 04:44:48,647 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140292860147456)>, <ExcThread(job, started 140292644665088)>, <ExcThread(validate, started 140292531406592)>, <ExcThread(validate_pre, started 140292523013888)>, <ExcThread(failed_post, started 140292070037248)>, <ExcThread(validate_post, started 140292078429952)>, <ExcThread(data, started 140292636272384)>, <ExcThread(copytool_out, started 140292556584704)>, <ExcThread(execute_payloads, started 140292061644544)>, <ExcThread(queue_monitor, started 140292036466432)>, <ExcThread(monitor, started 140292514621184)>, <ExcThread(copytool_in, started 140292506228480)>, <ExcThread(job_monitor, started 140292044859136)>, <ExcThread(queue_monitoring, started 140292539799296)>] 2019-08-13 04:44:48,679 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set 2019-08-13 04:44:48,679 | DEBUG | job | pilot.control.job | control | [job] control thread has finished 2019-08-13 04:44:48,947 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 13 threads 2019-08-13 04:44:48,948 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140292860147456)>, <ExcThread(validate, started 140292531406592)>, <ExcThread(validate_pre, started 140292523013888)>, <ExcThread(failed_post, started 140292070037248)>, <ExcThread(validate_post, started 140292078429952)>, <ExcThread(data, started 140292636272384)>, <ExcThread(copytool_out, started 140292556584704)>, <ExcThread(execute_payloads, started 140292061644544)>, <ExcThread(queue_monitor, started 140292036466432)>, <ExcThread(monitor, started 140292514621184)>, <ExcThread(copytool_in, started 140292506228480)>, <ExcThread(job_monitor, started 140292044859136)>, <ExcThread(queue_monitoring, started 140292539799296)>] 2019-08-13 04:44:48,971 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished 2019-08-13 04:44:49,033 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished 2019-08-13 04:44:49,035 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished 2019-08-13 04:44:49,047 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended 2019-08-13 04:44:49,099 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished 2019-08-13 04:44:49,149 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 8 threads 2019-08-13 04:44:49,149 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140292860147456)>, <ExcThread(failed_post, started 140292070037248)>, <ExcThread(data, started 140292636272384)>, <ExcThread(copytool_out, started 140292556584704)>, <ExcThread(queue_monitor, started 140292036466432)>, <ExcThread(copytool_in, started 140292506228480)>, <ExcThread(job_monitor, started 140292044859136)>, <ExcThread(queue_monitoring, started 140292539799296)>] 2019-08-13 04:44:49,376 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished 2019-08-13 04:44:49,419 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set 2019-08-13 04:44:49,420 | DEBUG | data | pilot.control.data | control | [data] control thread has finished 2019-08-13 04:44:49,451 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 6 threads 2019-08-13 04:44:49,451 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140292860147456)>, <ExcThread(failed_post, started 140292070037248)>, <ExcThread(queue_monitor, started 140292036466432)>, <ExcThread(copytool_in, started 140292506228480)>, <ExcThread(job_monitor, started 140292044859136)>, <ExcThread(queue_monitoring, started 140292539799296)>] 2019-08-13 04:44:49,495 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished 2019-08-13 04:44:49,552 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 5 threads 2019-08-13 04:44:49,552 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140292860147456)>, <ExcThread(queue_monitor, started 140292036466432)>, <ExcThread(copytool_in, started 140292506228480)>, <ExcThread(job_monitor, started 140292044859136)>, <ExcThread(queue_monitoring, started 140292539799296)>] 2019-08-13 04:44:49,615 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished 2019-08-13 04:44:49,653 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 4 threads 2019-08-13 04:44:49,653 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140292860147456)>, <ExcThread(queue_monitor, started 140292036466432)>, <ExcThread(job_monitor, started 140292044859136)>, <ExcThread(queue_monitoring, started 140292539799296)>] 2019-08-13 04:44:50,000 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration 2019-08-13 04:44:50,001 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished 2019-08-13 04:44:50,055 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 3 threads 2019-08-13 04:44:50,055 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140292860147456)>, <ExcThread(job_monitor, started 140292044859136)>, <ExcThread(queue_monitoring, started 140292539799296)>] 2019-08-13 04:44:51,365 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished 2019-08-13 04:44:51,464 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 2 threads 2019-08-13 04:44:51,464 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140292860147456)>, <ExcThread(job_monitor, started 140292044859136)>] 2019-08-13 04:45:05,163 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 62 s) 2019-08-13 04:45:05,163 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished 2019-08-13 04:45:05,243 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0) 2019-08-13 04:45:05,244 | INFO | MainThread | root | wrap_up | traces error code: 0 2019-08-13 04:45:05,244 | INFO | MainThread | root | wrap_up | pilot has finished 2019-08-13 04:45:05 UTC [wrapper] ==== pilot stdout END ==== 2019-08-13 04:45:05 UTC [wrapper] ==== wrapper stdout RESUME ==== 2019-08-13 04:45:05 UTC [wrapper] Pilot exit status: 0 2019-08-13 04:45:05 UTC [wrapper] STATUSCODE: 0 2019-08-13 04:45:05 UTC [wrapper] apfmon messages muted ---- find pandaID.out ---- total 48 -rw-rw-r-- 1 320 320 11357 Jul 25 08:38 LICENSE drwxrwxr-x 14 320 320 4096 Aug 12 18:42 pilot -rwxrwxr-x 1 320 320 20463 Jul 25 08:38 pilot.py -rw-r--r-- 1 320 320 8 Aug 7 05:02 PILOTVERSION -rw-rw-r-- 1 320 320 2251 Jul 25 08:38 README.md -rw-rw-r-- 1 320 320 221 Jul 25 08:38 TODO.md 2019-08-13 04:45:05 UTC [wrapper] Test setup, not cleaning 2019-08-13 04:45:05 UTC [wrapper] ==== wrapper stdout END ==== 2019-08-13 04:45:05 UTC [wrapper] ==== wrapper stderr END ==== 2019-08-13 04:45:05 UTC [wrapper] wrapper wrapperexiting ec=0, duration=14582 2019-08-13 04:45:05 UTC [wrapper] apfmon messages muted ***************diag file************ runtimeenvironments=APPS/HEP/ATLAS-SITE; Processors=1 WallTime=14582.07s KernelTime=1071.34s UserTime=92311.96s CPUUsage=640% MaxResidentMemory=1952376kB AverageResidentMemory=0kB AverageTotalMemory=0kB AverageUnsharedMemory=0kB AverageUnsharedStack=0kB AverageSharedMemory=0kB PageSize=4096B MajorPageFaults=968585 MinorPageFaults=23638140 Swaps=0 ForcedSwitches=1196405 WaitSwitches=11368619 Inputs=133383136 Outputs=979664 SocketReceived=0 SocketSent=0 Signals=0 nodename=wHewitt@d8 exitcode=0 ******************************WorkDir*********************** total 286056 drwxrwx--x 6 root root 4096 Aug 12 22:45 . drwxrwxrwx 33 root root 4096 Aug 12 15:18 .. -rw------- 1 root root 7409065 Aug 12 18:42 agis_ddmendpoints.json -rw------- 1 root root 4517698 Aug 12 18:42 agis_schedconf.cvmfs.json drwx------ 2 root root 4096 Aug 12 18:42 .alrb drwxr-xr-x 3 root root 4096 Aug 12 18:42 APPS -rw------- 1 root root 543 Aug 12 18:42 .asetup -rw------- 1 root root 829 Aug 12 18:44 .asetup.save -rw-r--r-- 1 root root 0 Aug 12 18:41 boinc_lockfile -rw-r--r-- 1 root root 8192 Aug 12 22:44 boinc_mmap_file -rw-r--r-- 1 root root 538 Aug 12 22:22 boinc_task_state.xml -rw------- 1 root root 498 Aug 12 22:45 EPHKDmIjSHvnShfckohDCDFpABFKDmABFKDmBftZDmABFKDmlRW8cn.diag -rw-r--r-- 1 root root 278163469 Aug 12 18:42 EVNT.18605754._000409.pool.root.1 -rw------- 1 root root 92009 Aug 12 22:44 heartbeat.json -rw-r--r-- 1 root root 8513 Aug 12 18:41 init_data.xml -rw-r--r-- 1 root root 261620 Aug 12 18:42 input.tar.gz -rw-r--r-- 1 root root 112 Aug 12 18:41 job.xml -rw------- 1 root root 823477 Aug 12 22:45 log.18722298._021016.job.log.1 -rw------- 1 root root 1202503 Aug 12 22:44 log.18722298._021016.job.log.tgz.1 -rw------- 1 root root 391 Aug 12 22:45 output.list -rw------- 1 4871 1028 2915 Aug 12 10:52 pandaJobData.out drwxr-xr-x 3 320 320 4096 Aug 7 05:02 pilot2 -rw-r--r-- 1 root root 253018 Aug 12 10:21 pilot2.tar.gz -rw------- 1 root root 10293 Aug 12 22:45 pilotlog.txt -rw-r--r-- 1 root root 4468 Aug 12 10:51 queuedata.json -rw-r--r-- 1 root root 815 Aug 12 18:42 RTE.tar.gz -rwxr-xr-x 1 root root 8779 Aug 12 18:41 run_atlas -rwx------ 1 4871 1028 12641 Aug 12 10:52 runpilot2-wrapper.sh -rw-r--r-- 1 root root 692 Aug 12 22:45 runtime_log -rw-r--r-- 1 root root 6844 Aug 12 22:45 runtime_log.err drwxrwx--x 2 root root 4096 Aug 12 22:45 shared -rw-r--r-- 1 root root 8688 Aug 12 18:42 start_atlas.sh -rw-r--r-- 1 root root 18119 Aug 12 22:45 stderr.txt -rw-r--r-- 1 root root 107 Aug 12 18:41 wrapper_26015_x86_64-pc-linux-gnu -rw-r--r-- 1 root root 28 Aug 12 22:44 wrapper_checkpoint.txt running start_atlas return value is 0 Parent exit 0 child process exit 0 22:45:05 (56849): run_atlas exited; CPU time 92312.192000 22:45:05 (56849): called boinc_finish(0) </stderr_txt> ]]>
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