Name | YDDMDmGTUHvnShfckohDCDFpABFKDmABFKDmUQwZDmABFKDmIs6Crn_0 |
Workunit | 1916799 |
Created | 12 Aug 2019, 18:44:07 UTC |
Sent | 12 Aug 2019, 20:44:21 UTC |
Report deadline | 19 Aug 2019, 20:44:21 UTC |
Received | 13 Aug 2019, 10:55:28 UTC |
Server state | Over |
Outcome | Success |
Client state | Done |
Exit status | 0 (0x00000000) |
Computer ID | 4132 |
Run time | 2 hours 15 min 43 sec |
CPU time | 14 hours 33 min 37 sec |
Validate state | Valid |
Credit | 534.16 |
Device peak FLOPS | 28.34 GFLOPS |
Application version | ATLAS Simulation v0.71 (native_mt) x86_64-pc-linux-gnu |
Peak working set size | 1.84 GB |
Peak swap size | 22.32 GB |
Peak disk usage | 611.79 MB |
<core_client_version>7.6.31</core_client_version> <![CDATA[ <stderr_txt> 02:37:23 (34289): wrapper (7.7.26015): starting 02:37:23 (34289): wrapper: running run_atlas (--nthreads 8) singularity image is /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sys.argv = ['run_atlas', '--nthreads', '8'] THREADS=8 Checking for CVMFS CVMFS is installed OS:cat: /etc/redhat-release: No such file or directory This is not SLC6, need to run with Singularity.... Checking Singularity... Singularity is installed, version 2.4.2-dist Testing the function of Singularity... Checking singularity with cmd:singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 hostname Singularity Works... copy /var/lib/boinc2/slots/6/shared/RTE.tar.gz copy /var/lib/boinc2/slots/6/shared/ATLAS.root_0 copy /var/lib/boinc2/slots/6/shared/input.tar.gz copy /var/lib/boinc2/slots/6/shared/start_atlas.sh export ATHENA_PROC_NUMBER=8;start atlas job with PandaID=4443180434 cmd = singularity exec --pwd /var/lib/boinc2/slots/6 -B /cvmfs,/var /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sh start_atlas.sh > runtime_log 2> runtime_log.err running cmd return value is 0 Moving ./HITS.18722432._019561.pool.root.1 to shared/HITS.pool.root.1 *****************The last 100 lines of the pilot log****************** 2019-08-13 10:52:37,459 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18722432 2019-08-13 10:52:37,459 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none) 2019-08-13 10:52:37,459 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE 2019-08-13 10:52:37,459 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished 2019-08-13 10:52:37,459 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0 2019-08-13 10:52:37,459 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0 2019-08-13 10:52:37,459 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag: 2019-08-13 10:52:37,459 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0 2019-08-13 10:52:37,459 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK 2019-08-13 10:52:37,459 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 52877 s 2019-08-13 10:52:37,460 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 200 2019-08-13 10:52:37,460 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0 2019-08-13 10:52:37,460 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 1662 2019-08-13 10:52:37,460 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: 1662 2019-08-13 10:52:37,460 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 8 2019-08-13 10:52:37,460 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False 2019-08-13 10:52:37,460 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-08-13 10:52:37,460 | INFO | retrieve | pilot.util.auxiliary | make_job_report | 2019-08-13 10:52:37,460 | INFO | retrieve | pilot.control.job | has_job_completed | job 4443180434 has completed 2019-08-13 10:52:37,460 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called 2019-08-13 10:52:37,465 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /var/lib/boinc2/slots/6/PanDA_Pilot-4443180434 2019-08-13 10:52:38,470 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [1662] 2019-08-13 10:52:38,470 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 1662 2019-08-13 10:52:38,471 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes 2019-08-13 10:52:39,474 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes 2019-08-13 10:52:39,474 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=1662 2019-08-13 10:52:39,600 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [1662] (in reverse order) 2019-08-13 10:52:39,679 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s) 2019-08-13 10:52:39,679 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs 2019-08-13 10:52:39,679 | INFO | retrieve | pilot.control.job | retrieve | ready for new job 2019-08-13 10:52:39,679 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging No handlers could be found for logger "pilot.util.mpi" 2019-08-13 10:52:40,185 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1 2019-08-13 10:52:50,235 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1 2019-08-13 10:52:50,235 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /var/lib/boinc2/slots/6 2019-08-13 10:52:50,259 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (274474205184 B) 2019-08-13 10:52:50,259 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job 2019-08-13 10:52:50,259 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished 2019-08-13 10:52:50,379 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 16 threads 2019-08-13 10:52:50,379 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140022107514624)>, <ExcThread(job, started 140021892032256)>, <ExcThread(queue_monitoring, started 140021470312192)>, <ExcThread(failed_post, started 140020891510528)>, <ExcThread(copytool_out, started 140021495490304)>, <ExcThread(validate_post, started 140021453526784)>, <ExcThread(payload, started 140021850068736)>, <ExcThread(copytool_in, started 140020899903232)>, <ExcThread(validate_pre, started 140021487097600)>, <ExcThread(job_monitor, started 140021503883008)>, <ExcThread(monitor, started 140021478704896)>, <ExcThread(data, started 140021875246848)>, <ExcThread(execute_payloads, started 140020883117824)>, <ExcThread(validate, started 140021883639552)>, <ExcThread(queue_monitor, started 140021461919488)>, <ExcThread(create_data_payload, started 140021866854144)>] 2019-08-13 10:52:50,424 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended 2019-08-13 10:52:50,565 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished 2019-08-13 10:52:50,584 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set 2019-08-13 10:52:50,584 | DEBUG | data | pilot.control.data | control | [data] control thread has finished 2019-08-13 10:52:50,688 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 13 threads 2019-08-13 10:52:50,688 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140022107514624)>, <ExcThread(job, started 140021892032256)>, <ExcThread(queue_monitoring, started 140021470312192)>, <ExcThread(failed_post, started 140020891510528)>, <ExcThread(copytool_out, started 140021495490304)>, <ExcThread(validate_post, started 140021453526784)>, <ExcThread(payload, started 140021850068736)>, <ExcThread(copytool_in, started 140020899903232)>, <ExcThread(job_monitor, started 140021503883008)>, <ExcThread(execute_payloads, started 140020883117824)>, <ExcThread(validate, started 140021883639552)>, <ExcThread(queue_monitor, started 140021461919488)>, <ExcThread(create_data_payload, started 140021866854144)>] 2019-08-13 10:52:50,878 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished 2019-08-13 10:52:50,935 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration 2019-08-13 10:52:50,943 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished 2019-08-13 10:52:50,990 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 11 threads 2019-08-13 10:52:50,990 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140022107514624)>, <ExcThread(job, started 140021892032256)>, <ExcThread(queue_monitoring, started 140021470312192)>, <ExcThread(failed_post, started 140020891510528)>, <ExcThread(copytool_out, started 140021495490304)>, <ExcThread(validate_post, started 140021453526784)>, <ExcThread(payload, started 140021850068736)>, <ExcThread(job_monitor, started 140021503883008)>, <ExcThread(execute_payloads, started 140020883117824)>, <ExcThread(queue_monitor, started 140021461919488)>, <ExcThread(create_data_payload, started 140021866854144)>] 2019-08-13 10:52:51,180 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished 2019-08-13 10:52:51,209 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set 2019-08-13 10:52:51,209 | DEBUG | job | pilot.control.job | control | [job] control thread has finished 2019-08-13 10:52:51,247 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished 2019-08-13 10:52:51,291 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 8 threads 2019-08-13 10:52:51,292 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140022107514624)>, <ExcThread(queue_monitoring, started 140021470312192)>, <ExcThread(failed_post, started 140020891510528)>, <ExcThread(copytool_out, started 140021495490304)>, <ExcThread(payload, started 140021850068736)>, <ExcThread(job_monitor, started 140021503883008)>, <ExcThread(execute_payloads, started 140020883117824)>, <ExcThread(queue_monitor, started 140021461919488)>] 2019-08-13 10:52:51,335 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set 2019-08-13 10:52:51,335 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished 2019-08-13 10:52:51,392 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 7 threads 2019-08-13 10:52:51,393 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140022107514624)>, <ExcThread(queue_monitoring, started 140021470312192)>, <ExcThread(failed_post, started 140020891510528)>, <ExcThread(copytool_out, started 140021495490304)>, <ExcThread(job_monitor, started 140021503883008)>, <ExcThread(execute_payloads, started 140020883117824)>, <ExcThread(queue_monitor, started 140021461919488)>] 2019-08-13 10:52:51,478 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished 2019-08-13 10:52:51,494 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 6 threads 2019-08-13 10:52:51,494 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140022107514624)>, <ExcThread(queue_monitoring, started 140021470312192)>, <ExcThread(failed_post, started 140020891510528)>, <ExcThread(copytool_out, started 140021495490304)>, <ExcThread(job_monitor, started 140021503883008)>, <ExcThread(queue_monitor, started 140021461919488)>] 2019-08-13 10:52:51,533 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished 2019-08-13 10:52:51,595 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 5 threads 2019-08-13 10:52:51,595 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140022107514624)>, <ExcThread(queue_monitoring, started 140021470312192)>, <ExcThread(copytool_out, started 140021495490304)>, <ExcThread(job_monitor, started 140021503883008)>, <ExcThread(queue_monitor, started 140021461919488)>] 2019-08-13 10:52:51,883 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration 2019-08-13 10:52:51,919 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration 2019-08-13 10:52:51,919 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished 2019-08-13 10:52:51,935 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished 2019-08-13 10:52:51,998 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 3 threads 2019-08-13 10:52:51,998 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140022107514624)>, <ExcThread(queue_monitoring, started 140021470312192)>, <ExcThread(job_monitor, started 140021503883008)>] 2019-08-13 10:52:54,884 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished 2019-08-13 10:52:54,915 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 2 threads 2019-08-13 10:52:54,916 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140022107514624)>, <ExcThread(job_monitor, started 140021503883008)>] 2019-08-13 10:53:03,711 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 61 s) 2019-08-13 10:53:03,711 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished 2019-08-13 10:53:03,774 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0) 2019-08-13 10:53:03,774 | INFO | MainThread | root | wrap_up | traces error code: 0 2019-08-13 10:53:03,774 | INFO | MainThread | root | wrap_up | pilot has finished 2019-08-13 10:53:03 UTC [wrapper] ==== pilot stdout END ==== 2019-08-13 10:53:03 UTC [wrapper] ==== wrapper stdout RESUME ==== 2019-08-13 10:53:03 UTC [wrapper] Pilot exit status: 0 2019-08-13 10:53:03 UTC [wrapper] STATUSCODE: 0 2019-08-13 10:53:03 UTC [wrapper] apfmon messages muted ---- find pandaID.out ---- total 48 -rw-rw-r-- 1 320 320 11357 Jul 25 08:38 LICENSE drwxrwxr-x 14 320 320 4096 Aug 13 02:37 pilot -rwxrwxr-x 1 320 320 20463 Jul 25 08:38 pilot.py -rw-r--r-- 1 320 320 8 Aug 7 05:02 PILOTVERSION -rw-rw-r-- 1 320 320 2251 Jul 25 08:38 README.md -rw-rw-r-- 1 320 320 221 Jul 25 08:38 TODO.md 2019-08-13 10:53:03 UTC [wrapper] Test setup, not cleaning 2019-08-13 10:53:03 UTC [wrapper] ==== wrapper stdout END ==== 2019-08-13 10:53:03 UTC [wrapper] ==== wrapper stderr END ==== 2019-08-13 10:53:03 UTC [wrapper] wrapper wrapperexiting ec=0, duration=8139 2019-08-13 10:53:04 UTC [wrapper] apfmon messages muted ***************diag file************ runtimeenvironments=APPS/HEP/ATLAS-SITE; Processors=1 WallTime=8139.37s KernelTime=597.97s UserTime=52417.74s CPUUsage=651% MaxResidentMemory=2036680kB AverageResidentMemory=0kB AverageTotalMemory=0kB AverageUnsharedMemory=0kB AverageUnsharedStack=0kB AverageSharedMemory=0kB PageSize=4096B MajorPageFaults=480982 MinorPageFaults=23446756 Swaps=0 ForcedSwitches=324673 WaitSwitches=8286489 Inputs=84769384 Outputs=766104 SocketReceived=0 SocketSent=0 Signals=0 nodename=wHewitt@d8 exitcode=0 ******************************WorkDir*********************** total 230464 drwxrwx--x 6 root root 4096 Aug 13 04:53 . drwxrwxrwx 33 root root 4096 Aug 12 15:18 .. -rw------- 1 root root 7409065 Aug 13 02:37 agis_ddmendpoints.json -rw------- 1 root root 4517434 Aug 13 02:37 agis_schedconf.cvmfs.json drwx------ 2 root root 4096 Aug 13 02:37 .alrb drwxr-xr-x 3 root root 4096 Aug 13 02:37 APPS -rw------- 1 root root 543 Aug 13 02:37 .asetup -rw------- 1 root root 829 Aug 13 02:38 .asetup.save -rw-r--r-- 1 root root 0 Aug 13 02:37 boinc_lockfile -rw-r--r-- 1 root root 8192 Aug 13 04:52 boinc_mmap_file -rw-r--r-- 1 root root 537 Aug 13 04:43 boinc_task_state.xml -rw-r--r-- 1 root root 221465193 Aug 13 02:37 EVNT.18605781._000405.pool.root.1 -rw------- 1 root root 121341 Aug 13 04:52 heartbeat.json -rw-r--r-- 1 root root 8513 Aug 13 02:37 init_data.xml -rw-r--r-- 1 root root 261629 Aug 13 02:37 input.tar.gz -rw-r--r-- 1 root root 112 Aug 13 02:37 job.xml -rw------- 1 root root 589125 Aug 13 04:53 log.18722432._019561.job.log.1 -rw------- 1 root root 1191314 Aug 13 04:52 log.18722432._019561.job.log.tgz.1 -rw------- 1 root root 391 Aug 13 04:53 output.list -rw------- 1 4871 1028 2957 Aug 12 12:43 pandaJobData.out drwxr-xr-x 3 320 320 4096 Aug 7 05:02 pilot2 -rw-r--r-- 1 root root 253018 Aug 12 12:23 pilot2.tar.gz -rw------- 1 root root 11434 Aug 13 04:53 pilotlog.txt -rw-r--r-- 1 root root 4468 Aug 12 12:43 queuedata.json -rw-r--r-- 1 root root 815 Aug 13 02:37 RTE.tar.gz -rwxr-xr-x 1 root root 8779 Aug 13 02:37 run_atlas -rwx------ 1 4871 1028 12641 Aug 12 12:43 runpilot2-wrapper.sh -rw-r--r-- 1 root root 692 Aug 13 04:53 runtime_log -rw-r--r-- 1 root root 6844 Aug 13 04:53 runtime_log.err drwxrwx--x 2 root root 4096 Aug 13 04:53 shared -rw-r--r-- 1 root root 8688 Aug 13 02:37 start_atlas.sh -rw-r--r-- 1 root root 18928 Aug 13 04:53 stderr.txt -rw-r--r-- 1 root root 107 Aug 13 02:37 wrapper_26015_x86_64-pc-linux-gnu -rw-r--r-- 1 root root 27 Aug 13 04:52 wrapper_checkpoint.txt -rw------- 1 root root 493 Aug 13 04:53 YDDMDmGTUHvnShfckohDCDFpABFKDmABFKDmUQwZDmABFKDmIs6Crn.diag running start_atlas return value is 0 Parent exit 0 child process exit 0 04:53:04 (34289): run_atlas exited; CPU time 52417.956000 04:53:04 (34289): called boinc_finish(0) </stderr_txt> ]]>
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