Name | fNNKDmm4UHvnShfckohDCDFpABFKDmABFKDmDVxZDmABFKDmWSTHMm_0 |
Workunit | 1916816 |
Created | 12 Aug 2019, 19:22:44 UTC |
Sent | 12 Aug 2019, 20:44:21 UTC |
Report deadline | 19 Aug 2019, 20:44:21 UTC |
Received | 13 Aug 2019, 8:39:20 UTC |
Server state | Over |
Outcome | Success |
Client state | Done |
Exit status | 0 (0x00000000) |
Computer ID | 4132 |
Run time | 1 hours 49 min 58 sec |
CPU time | 11 hours 21 min 35 sec |
Validate state | Valid |
Credit | 432.87 |
Device peak FLOPS | 28.34 GFLOPS |
Application version | ATLAS Simulation v0.71 (native_mt) x86_64-pc-linux-gnu |
Peak working set size | 1.85 GB |
Peak swap size | 2.55 GB |
Peak disk usage | 544.22 MB |
<core_client_version>7.6.31</core_client_version> <![CDATA[ <stderr_txt> 00:47:22 (25630): wrapper (7.7.26015): starting 00:47:22 (25630): wrapper: running run_atlas (--nthreads 8) singularity image is /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sys.argv = ['run_atlas', '--nthreads', '8'] THREADS=8 Checking for CVMFS CVMFS is installed OS:cat: /etc/redhat-release: No such file or directory This is not SLC6, need to run with Singularity.... Checking Singularity... Singularity is installed, version 2.4.2-dist Testing the function of Singularity... Checking singularity with cmd:singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 hostname Singularity Works... copy /var/lib/boinc2/slots/6/shared/RTE.tar.gz copy /var/lib/boinc2/slots/6/shared/ATLAS.root_0 copy /var/lib/boinc2/slots/6/shared/input.tar.gz copy /var/lib/boinc2/slots/6/shared/start_atlas.sh export ATHENA_PROC_NUMBER=8;start atlas job with PandaID=4443186309 cmd = singularity exec --pwd /var/lib/boinc2/slots/6 -B /cvmfs,/var /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sh start_atlas.sh > runtime_log 2> runtime_log.err running cmd return value is 0 Moving ./HITS.18722398._023361.pool.root.1 to shared/HITS.pool.root.1 *****************The last 100 lines of the pilot log****************** 2019-08-13 08:36:34,867 | INFO | retrieve | pilot.util.auxiliary | make_job_report | 2019-08-13 08:36:34,867 | INFO | retrieve | pilot.util.auxiliary | make_job_report | job summary report 2019-08-13 08:36:34,867 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-08-13 08:36:34,867 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4443186309 2019-08-13 08:36:34,867 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18722398 2019-08-13 08:36:34,867 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none) 2019-08-13 08:36:34,867 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE 2019-08-13 08:36:34,868 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished 2019-08-13 08:36:34,868 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0 2019-08-13 08:36:34,868 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0 2019-08-13 08:36:34,868 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag: 2019-08-13 08:36:34,868 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0 2019-08-13 08:36:34,868 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK 2019-08-13 08:36:34,868 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 41319 s 2019-08-13 08:36:34,868 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 200 2019-08-13 08:36:34,868 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0 2019-08-13 08:36:34,868 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 4497 2019-08-13 08:36:34,868 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: 4497 2019-08-13 08:36:34,868 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 8 2019-08-13 08:36:34,868 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False 2019-08-13 08:36:34,869 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-08-13 08:36:34,869 | INFO | retrieve | pilot.util.auxiliary | make_job_report | 2019-08-13 08:36:34,869 | INFO | retrieve | pilot.control.job | has_job_completed | job 4443186309 has completed 2019-08-13 08:36:34,869 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called 2019-08-13 08:36:34,874 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /var/lib/boinc2/slots/6/PanDA_Pilot-4443186309 2019-08-13 08:36:35,879 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [4497] 2019-08-13 08:36:35,879 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 4497 2019-08-13 08:36:35,879 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes 2019-08-13 08:36:36,881 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes 2019-08-13 08:36:36,881 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=4497 2019-08-13 08:36:37,019 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [4497] (in reverse order) 2019-08-13 08:36:37,116 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s) 2019-08-13 08:36:37,117 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs 2019-08-13 08:36:37,117 | INFO | retrieve | pilot.control.job | retrieve | ready for new job 2019-08-13 08:36:37,117 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging No handlers could be found for logger "pilot.util.mpi" 2019-08-13 08:36:37,623 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1 2019-08-13 08:36:47,653 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1 2019-08-13 08:36:47,654 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /var/lib/boinc2/slots/6 2019-08-13 08:36:47,681 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (274314821632 B) 2019-08-13 08:36:47,682 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job 2019-08-13 08:36:47,682 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished 2019-08-13 08:36:47,693 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration 2019-08-13 08:36:47,698 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished 2019-08-13 08:36:47,863 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration 2019-08-13 08:36:48,012 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 15 threads 2019-08-13 08:36:48,012 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139806773278464)>, <ExcThread(job, started 139806557796096)>, <ExcThread(queue_monitor, started 139805413340928)>, <ExcThread(failed_post, started 139805983749888)>, <ExcThread(payload, started 139806524225280)>, <ExcThread(job_monitor, started 139805975357184)>, <ExcThread(copytool_out, started 139806532617984)>, <ExcThread(execute_payloads, started 139805966964480)>, <ExcThread(data, started 139806541010688)>, <ExcThread(copytool_in, started 139806008928000)>, <ExcThread(validate_pre, started 139806017320704)>, <ExcThread(monitor, started 139806499047168)>, <ExcThread(queue_monitoring, started 139806507439872)>, <ExcThread(validate_post, started 139805992142592)>, <ExcThread(validate, started 139806549403392)>] 2019-08-13 08:36:48,151 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished 2019-08-13 08:36:48,295 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished 2019-08-13 08:36:48,410 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished 2019-08-13 08:36:48,415 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended 2019-08-13 08:36:48,417 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 11 threads 2019-08-13 08:36:48,417 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139806773278464)>, <ExcThread(job, started 139806557796096)>, <ExcThread(queue_monitor, started 139805413340928)>, <ExcThread(payload, started 139806524225280)>, <ExcThread(job_monitor, started 139805975357184)>, <ExcThread(copytool_out, started 139806532617984)>, <ExcThread(execute_payloads, started 139805966964480)>, <ExcThread(data, started 139806541010688)>, <ExcThread(copytool_in, started 139806008928000)>, <ExcThread(queue_monitoring, started 139806507439872)>, <ExcThread(validate, started 139806549403392)>] 2019-08-13 08:36:48,535 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set 2019-08-13 08:36:48,535 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished 2019-08-13 08:36:48,554 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished 2019-08-13 08:36:48,602 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished 2019-08-13 08:36:48,694 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished 2019-08-13 08:36:48,703 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set 2019-08-13 08:36:48,703 | DEBUG | data | pilot.control.data | control | [data] control thread has finished 2019-08-13 08:36:48,719 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 6 threads 2019-08-13 08:36:48,719 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139806773278464)>, <ExcThread(job, started 139806557796096)>, <ExcThread(queue_monitor, started 139805413340928)>, <ExcThread(job_monitor, started 139805975357184)>, <ExcThread(queue_monitoring, started 139806507439872)>, <ExcThread(validate, started 139806549403392)>] 2019-08-13 08:36:48,791 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set 2019-08-13 08:36:48,791 | DEBUG | job | pilot.control.job | control | [job] control thread has finished 2019-08-13 08:36:48,820 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 5 threads 2019-08-13 08:36:48,820 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139806773278464)>, <ExcThread(queue_monitor, started 139805413340928)>, <ExcThread(job_monitor, started 139805975357184)>, <ExcThread(queue_monitoring, started 139806507439872)>, <ExcThread(validate, started 139806549403392)>] 2019-08-13 08:36:48,831 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished 2019-08-13 08:36:48,921 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 4 threads 2019-08-13 08:36:48,921 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139806773278464)>, <ExcThread(queue_monitor, started 139805413340928)>, <ExcThread(job_monitor, started 139805975357184)>, <ExcThread(queue_monitoring, started 139806507439872)>] 2019-08-13 08:36:49,222 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration 2019-08-13 08:36:49,222 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished 2019-08-13 08:36:49,223 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 3 threads 2019-08-13 08:36:49,223 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139806773278464)>, <ExcThread(job_monitor, started 139805975357184)>, <ExcThread(queue_monitoring, started 139806507439872)>] 2019-08-13 08:36:50,864 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished 2019-08-13 08:36:50,934 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 2 threads 2019-08-13 08:36:50,934 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139806773278464)>, <ExcThread(job_monitor, started 139805975357184)>] 2019-08-13 08:37:18,099 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 62 s) 2019-08-13 08:37:18,099 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished 2019-08-13 08:37:18,179 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0) 2019-08-13 08:37:18,179 | INFO | MainThread | root | wrap_up | traces error code: 0 2019-08-13 08:37:18,179 | INFO | MainThread | root | wrap_up | pilot has finished 2019-08-13 08:37:18 UTC [wrapper] ==== pilot stdout END ==== 2019-08-13 08:37:18 UTC [wrapper] ==== wrapper stdout RESUME ==== 2019-08-13 08:37:18 UTC [wrapper] Pilot exit status: 0 2019-08-13 08:37:18 UTC [wrapper] STATUSCODE: 0 2019-08-13 08:37:18 UTC [wrapper] apfmon messages muted ---- find pandaID.out ---- total 48 -rw-rw-r-- 1 320 320 11357 Jul 25 08:38 LICENSE drwxrwxr-x 14 320 320 4096 Aug 13 00:47 pilot -rwxrwxr-x 1 320 320 20463 Jul 25 08:38 pilot.py -rw-r--r-- 1 320 320 8 Aug 7 05:02 PILOTVERSION -rw-rw-r-- 1 320 320 2251 Jul 25 08:38 README.md -rw-rw-r-- 1 320 320 221 Jul 25 08:38 TODO.md 2019-08-13 08:37:18 UTC [wrapper] Test setup, not cleaning 2019-08-13 08:37:18 UTC [wrapper] ==== wrapper stdout END ==== 2019-08-13 08:37:18 UTC [wrapper] ==== wrapper stderr END ==== 2019-08-13 08:37:18 UTC [wrapper] wrapper wrapperexiting ec=0, duration=6590 2019-08-13 08:37:18 UTC [wrapper] apfmon messages muted ***************diag file************ runtimeenvironments=APPS/HEP/ATLAS-SITE; Processors=1 WallTime=6589.90s KernelTime=551.74s UserTime=40895.48s CPUUsage=628% MaxResidentMemory=2033400kB AverageResidentMemory=0kB AverageTotalMemory=0kB AverageUnsharedMemory=0kB AverageUnsharedStack=0kB AverageSharedMemory=0kB PageSize=4096B MajorPageFaults=409302 MinorPageFaults=16920322 Swaps=0 ForcedSwitches=297459 WaitSwitches=7076945 Inputs=72790560 Outputs=642864 SocketReceived=0 SocketSent=0 Signals=0 nodename=wHewitt@d8 exitcode=0 ******************************WorkDir*********************** total 215164 drwxrwx--x 6 root root 4096 Aug 13 02:37 . drwxrwxrwx 33 root root 4096 Aug 12 15:18 .. -rw------- 1 root root 7409065 Aug 13 00:47 agis_ddmendpoints.json -rw------- 1 root root 4517767 Aug 13 00:47 agis_schedconf.cvmfs.json drwx------ 2 root root 4096 Aug 13 00:47 .alrb drwxr-xr-x 3 root root 4096 Aug 13 00:47 APPS -rw------- 1 root root 543 Aug 13 00:47 .asetup -rw------- 1 root root 829 Aug 13 00:48 .asetup.save -rw-r--r-- 1 root root 0 Aug 13 00:47 boinc_lockfile -rw-r--r-- 1 root root 8192 Aug 13 02:36 boinc_mmap_file -rw-r--r-- 1 root root 536 Aug 13 02:28 boinc_task_state.xml -rw-r--r-- 1 root root 205943587 Aug 13 00:47 EVNT.18605775._000462.pool.root.1 -rw------- 1 root root 493 Aug 13 02:37 fNNKDmm4UHvnShfckohDCDFpABFKDmABFKDmDVxZDmABFKDmWSTHMm.diag -rw------- 1 root root 88182 Aug 13 02:36 heartbeat.json -rw-r--r-- 1 root root 8513 Aug 13 00:47 init_data.xml -rw-r--r-- 1 root root 261616 Aug 13 00:47 input.tar.gz -rw-r--r-- 1 root root 112 Aug 13 00:47 job.xml -rw------- 1 root root 486388 Aug 13 02:37 log.18722398._023361.job.log.1 -rw------- 1 root root 1173514 Aug 13 02:36 log.18722398._023361.job.log.tgz.1 -rw------- 1 root root 391 Aug 13 02:37 output.list -rw------- 1 4871 1028 2957 Aug 12 13:22 pandaJobData.out drwxr-xr-x 3 320 320 4096 Aug 7 05:02 pilot2 -rw-r--r-- 1 root root 253018 Aug 12 12:23 pilot2.tar.gz -rw------- 1 root root 9517 Aug 13 02:37 pilotlog.txt -rw-r--r-- 1 root root 4468 Aug 12 13:22 queuedata.json -rw-r--r-- 1 root root 815 Aug 13 00:47 RTE.tar.gz -rwxr-xr-x 1 root root 8779 Aug 13 00:47 run_atlas -rwx------ 1 4871 1028 12641 Aug 12 13:22 runpilot2-wrapper.sh -rw-r--r-- 1 root root 692 Aug 13 02:37 runtime_log -rw-r--r-- 1 root root 6844 Aug 13 02:37 runtime_log.err drwxrwx--x 2 root root 4096 Aug 13 02:37 shared -rw-r--r-- 1 root root 8688 Aug 13 00:47 start_atlas.sh -rw-r--r-- 1 root root 17595 Aug 13 02:37 stderr.txt -rw-r--r-- 1 root root 107 Aug 13 00:47 wrapper_26015_x86_64-pc-linux-gnu -rw-r--r-- 1 root root 27 Aug 13 02:36 wrapper_checkpoint.txt running start_atlas return value is 0 Parent exit 0 child process exit 0 02:37:18 (25630): run_atlas exited; CPU time 40895.684000 02:37:18 (25630): called boinc_finish(0) </stderr_txt> ]]>
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