Name | tMCNDmX6YHvnShfckohDCDFpABFKDmABFKDmhp3ZDmABFKDmTyJRem_0 |
Workunit | 1916880 |
Created | 12 Aug 2019, 23:40:32 UTC |
Sent | 12 Aug 2019, 23:46:18 UTC |
Report deadline | 19 Aug 2019, 23:46:18 UTC |
Received | 13 Aug 2019, 13:55:34 UTC |
Server state | Over |
Outcome | Success |
Client state | Done |
Exit status | 0 (0x00000000) |
Computer ID | 3911 |
Run time | 3 hours 21 min 47 sec |
CPU time | 12 hours 30 min 42 sec |
Validate state | Valid |
Credit | 357.58 |
Device peak FLOPS | 12.76 GFLOPS |
Application version | ATLAS Simulation v0.71 (native_mt) x86_64-pc-linux-gnu |
Peak working set size | 1.81 GB |
Peak swap size | 2.57 GB |
Peak disk usage | 615.69 MB |
<core_client_version>7.7.0</core_client_version> <![CDATA[ <stderr_txt> 11:33:26 (29888): wrapper (7.7.26015): starting 11:33:26 (29888): wrapper: running run_atlas (--nthreads 4) singularity image is /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sys.argv = ['run_atlas', '--nthreads', '4'] THREADS=4 Checking for CVMFS CVMFS is installed OS:CentOS Linux release 7.6.1810 (Core) This is not SLC6, need to run with Singularity.... Checking Singularity... Singularity is not installed, using version from CVMFS Testing the function of Singularity... Checking singularity with cmd:/cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 hostname Singularity Works... copy /home/grid/slots/0/shared/ATLAS.root_0 copy /home/grid/slots/0/shared/input.tar.gz copy /home/grid/slots/0/shared/RTE.tar.gz copy /home/grid/slots/0/shared/start_atlas.sh export ATHENA_PROC_NUMBER=4;start atlas job with PandaID=4443205479 cmd = /cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec --pwd /home/grid/slots/0 -B /cvmfs,/home /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sh start_atlas.sh > runtime_log 2> runtime_log.err running cmd return value is 0 Moving ./HITS.18722432._020432.pool.root.1 to shared/HITS.pool.root.1 *****************The last 100 lines of the pilot log****************** 2019-08-13 12:54:19,242 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18722432 2019-08-13 12:54:19,243 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none) 2019-08-13 12:54:19,243 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE 2019-08-13 12:54:19,243 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished 2019-08-13 12:54:19,243 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0 2019-08-13 12:54:19,243 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0 2019-08-13 12:54:19,243 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag: 2019-08-13 12:54:19,243 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0 2019-08-13 12:54:19,243 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK 2019-08-13 12:54:19,243 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 45210 s 2019-08-13 12:54:19,243 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 200 2019-08-13 12:54:19,243 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0 2019-08-13 12:54:19,243 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 4176 2019-08-13 12:54:19,243 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: 4176 2019-08-13 12:54:19,244 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 4 2019-08-13 12:54:19,244 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False 2019-08-13 12:54:19,244 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-08-13 12:54:19,244 | INFO | retrieve | pilot.util.auxiliary | make_job_report | 2019-08-13 12:54:19,244 | INFO | retrieve | pilot.control.job | has_job_completed | job 4443205479 has completed 2019-08-13 12:54:19,244 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called 2019-08-13 12:54:19,253 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /home/grid/slots/0/PanDA_Pilot-4443205479 2019-08-13 12:54:20,258 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [4176] 2019-08-13 12:54:20,258 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 4176 2019-08-13 12:54:20,258 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes 2019-08-13 12:54:21,259 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes 2019-08-13 12:54:21,259 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=4176 2019-08-13 12:54:21,340 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [4176] (in reverse order) 2019-08-13 12:54:21,391 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s) 2019-08-13 12:54:21,391 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs 2019-08-13 12:54:21,391 | INFO | retrieve | pilot.control.job | retrieve | ready for new job 2019-08-13 12:54:21,391 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging No handlers could be found for logger "pilot.util.mpi" 2019-08-13 12:54:21,902 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1 2019-08-13 12:54:31,926 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1 2019-08-13 12:54:31,927 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /home/grid/slots/0 2019-08-13 12:54:31,963 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (35559309312 B) 2019-08-13 12:54:31,963 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job 2019-08-13 12:54:31,963 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished 2019-08-13 12:54:31,964 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended 2019-08-13 12:54:31,972 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration 2019-08-13 12:54:31,974 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 15 threads 2019-08-13 12:54:31,975 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140096170440448)>, <ExcThread(job, started 140095954167552)>, <ExcThread(copytool_in, started 140095323633408)>, <ExcThread(validate_post, started 140095315240704)>, <ExcThread(create_data_payload, started 140095701108480)>, <ExcThread(failed_post, started 140095306848000)>, <ExcThread(queue_monitoring, started 140095709501184)>, <ExcThread(job_monitor, started 140095298455296)>, <ExcThread(validate_pre, started 140095684323072)>, <ExcThread(execute_payloads, started 140095290062592)>, <ExcThread(payload, started 140095726286592)>, <ExcThread(queue_monitor, started 140095281669888)>, <ExcThread(data, started 140095937382144)>, <ExcThread(validate, started 140095945774848)>, <ExcThread(copytool_out, started 140095717893888)>] 2019-08-13 12:54:32,006 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set 2019-08-13 12:54:32,006 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished 2019-08-13 12:54:32,012 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished 2019-08-13 12:54:32,096 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished 2019-08-13 12:54:32,277 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 12 threads 2019-08-13 12:54:32,277 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140096170440448)>, <ExcThread(job, started 140095954167552)>, <ExcThread(copytool_in, started 140095323633408)>, <ExcThread(create_data_payload, started 140095701108480)>, <ExcThread(failed_post, started 140095306848000)>, <ExcThread(queue_monitoring, started 140095709501184)>, <ExcThread(job_monitor, started 140095298455296)>, <ExcThread(execute_payloads, started 140095290062592)>, <ExcThread(queue_monitor, started 140095281669888)>, <ExcThread(data, started 140095937382144)>, <ExcThread(validate, started 140095945774848)>, <ExcThread(copytool_out, started 140095717893888)>] 2019-08-13 12:54:32,292 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished 2019-08-13 12:54:32,297 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished 2019-08-13 12:54:32,361 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished 2019-08-13 12:54:32,408 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set 2019-08-13 12:54:32,408 | DEBUG | job | pilot.control.job | control | [job] control thread has finished 2019-08-13 12:54:32,515 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 8 threads 2019-08-13 12:54:32,515 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140096170440448)>, <ExcThread(copytool_in, started 140095323633408)>, <ExcThread(queue_monitoring, started 140095709501184)>, <ExcThread(job_monitor, started 140095298455296)>, <ExcThread(queue_monitor, started 140095281669888)>, <ExcThread(data, started 140095937382144)>, <ExcThread(validate, started 140095945774848)>, <ExcThread(copytool_out, started 140095717893888)>] 2019-08-13 12:54:32,778 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set 2019-08-13 12:54:32,779 | DEBUG | data | pilot.control.data | control | [data] control thread has finished 2019-08-13 12:54:32,817 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 7 threads 2019-08-13 12:54:32,818 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140096170440448)>, <ExcThread(copytool_in, started 140095323633408)>, <ExcThread(queue_monitoring, started 140095709501184)>, <ExcThread(job_monitor, started 140095298455296)>, <ExcThread(queue_monitor, started 140095281669888)>, <ExcThread(validate, started 140095945774848)>, <ExcThread(copytool_out, started 140095717893888)>] 2019-08-13 12:54:32,878 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished 2019-08-13 12:54:32,919 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 6 threads 2019-08-13 12:54:32,919 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140096170440448)>, <ExcThread(queue_monitoring, started 140095709501184)>, <ExcThread(job_monitor, started 140095298455296)>, <ExcThread(queue_monitor, started 140095281669888)>, <ExcThread(validate, started 140095945774848)>, <ExcThread(copytool_out, started 140095717893888)>] 2019-08-13 12:54:33,122 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished 2019-08-13 12:54:33,221 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 5 threads 2019-08-13 12:54:33,222 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140096170440448)>, <ExcThread(queue_monitoring, started 140095709501184)>, <ExcThread(job_monitor, started 140095298455296)>, <ExcThread(queue_monitor, started 140095281669888)>, <ExcThread(copytool_out, started 140095717893888)>] 2019-08-13 12:54:33,436 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration 2019-08-13 12:54:33,741 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration 2019-08-13 12:54:33,741 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished 2019-08-13 12:54:33,826 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 4 threads 2019-08-13 12:54:33,827 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140096170440448)>, <ExcThread(queue_monitoring, started 140095709501184)>, <ExcThread(job_monitor, started 140095298455296)>, <ExcThread(copytool_out, started 140095717893888)>] 2019-08-13 12:54:34,437 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished 2019-08-13 12:54:34,532 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 3 threads 2019-08-13 12:54:34,533 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140096170440448)>, <ExcThread(queue_monitoring, started 140095709501184)>, <ExcThread(job_monitor, started 140095298455296)>] 2019-08-13 12:54:34,974 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished 2019-08-13 12:54:35,037 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 2 threads 2019-08-13 12:54:35,037 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140096170440448)>, <ExcThread(job_monitor, started 140095298455296)>] 2019-08-13 12:55:11,230 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 62 s) 2019-08-13 12:55:11,230 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished 2019-08-13 12:55:11,317 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0) 2019-08-13 12:55:11,318 | INFO | MainThread | root | wrap_up | traces error code: 0 2019-08-13 12:55:11,318 | INFO | MainThread | root | wrap_up | pilot has finished 2019-08-13 12:55:11 UTC [wrapper] ==== pilot stdout END ==== 2019-08-13 12:55:11 UTC [wrapper] ==== wrapper stdout RESUME ==== 2019-08-13 12:55:11 UTC [wrapper] Pilot exit status: 0 2019-08-13 12:55:11 UTC [wrapper] STATUSCODE: 0 2019-08-13 12:55:11 UTC [wrapper] apfmon messages muted ---- find pandaID.out ---- total 44 -rw-------. 1 grid grid 11357 Jul 25 16:38 LICENSE drwx------. 14 grid grid 216 Aug 13 11:33 pilot -rwx------. 1 grid grid 20463 Jul 25 16:38 pilot.py -rw-------. 1 grid grid 8 Aug 7 13:02 PILOTVERSION -rw-------. 1 grid grid 2251 Jul 25 16:38 README.md -rw-------. 1 grid grid 221 Jul 25 16:38 TODO.md 2019-08-13 12:55:11 UTC [wrapper] Test setup, not cleaning 2019-08-13 12:55:11 UTC [wrapper] ==== wrapper stdout END ==== 2019-08-13 12:55:11 UTC [wrapper] ==== wrapper stderr END ==== 2019-08-13 12:55:11 UTC [wrapper] wrapper wrapperexiting ec=0, duration=12101 2019-08-13 12:55:11 UTC [wrapper] apfmon messages muted ***************diag file************ runtimeenvironments=APPS/HEP/ATLAS-SITE; Processors=1 WallTime=12101.77s KernelTime=378.73s UserTime=45041.99s CPUUsage=375% MaxResidentMemory=1945336kB AverageResidentMemory=0kB AverageTotalMemory=0kB AverageUnsharedMemory=0kB AverageUnsharedStack=0kB AverageSharedMemory=0kB PageSize=4096B MajorPageFaults=385375 MinorPageFaults=16528860 Swaps=0 ForcedSwitches=5211574 WaitSwitches=8050314 Inputs=93538976 Outputs=768312 SocketReceived=0 SocketSent=0 Signals=0 nodename=David_Cameron@dcameron04.cern.ch exitcode=0 ******************************WorkDir*********************** total 231416 drwxrwx--x. 6 grid grid 4096 Aug 13 14:55 . drwxr-x--x. 3 grid grid 15 Aug 8 09:08 .. -rw-------. 1 grid grid 7409065 Aug 13 11:33 agis_ddmendpoints.json -rw-------. 1 grid grid 4517399 Aug 13 11:33 agis_schedconf.cvmfs.json drwx------. 2 grid grid 6 Aug 13 11:33 .alrb drwxr-xr-x. 3 grid grid 17 Aug 13 11:33 APPS -rw-------. 1 grid grid 538 Aug 13 11:33 .asetup -rw-------. 1 grid grid 826 Aug 13 11:34 .asetup.save -rw-rw-r--. 1 grid grid 0 Aug 13 11:33 boinc_lockfile -rw-rw-r--. 1 grid grid 8192 Aug 13 14:55 boinc_mmap_file -rw-rw-r--. 1 grid grid 537 Aug 13 14:46 boinc_task_state.xml -rw-rw-r--. 1 grid grid 222757371 Aug 13 11:33 EVNT.18605781._000422.pool.root.1 -rw-------. 1 grid grid 104727 Aug 13 14:54 heartbeat.json -rw-rw-r--. 1 grid grid 5863 Aug 13 11:33 init_data.xml -rw-rw-r--. 1 grid grid 261616 Aug 13 11:33 input.tar.gz -rw-rw-r--. 1 grid grid 112 Aug 13 11:33 job.xml -rw-------. 1 grid grid 648393 Aug 13 14:55 log.18722432._020432.job.log.1 -rw-------. 1 grid grid 849047 Aug 13 14:54 log.18722432._020432.job.log.tgz.1 -rw-------. 1 grid grid 391 Aug 13 14:55 output.list -rw-------. 1 grid grid 2957 Aug 13 01:40 pandaJobData.out drwx------. 3 grid grid 174 Aug 7 13:02 pilot2 -rw-r--r--. 1 grid grid 253018 Aug 13 01:31 pilot2.tar.gz -rw-------. 1 grid grid 10940 Aug 13 14:55 pilotlog.txt -rw-r--r--. 1 grid grid 4468 Aug 13 01:40 queuedata.json -rw-rw-r--. 1 grid grid 815 Aug 13 11:33 RTE.tar.gz -rwxr-xr-x. 1 grid grid 8779 Aug 13 11:33 run_atlas -rwx------. 1 grid grid 12641 Aug 13 01:40 runpilot2-wrapper.sh -rw-rw-r--. 1 grid grid 692 Aug 13 14:55 runtime_log -rw-rw-r--. 1 grid grid 6807 Aug 13 14:55 runtime_log.err drwxrwx--x. 2 grid grid 131 Aug 13 14:55 shared -rw-rw-r--. 1 grid grid 8688 Aug 13 11:33 start_atlas.sh -rw-rw-r--. 1 grid grid 18594 Aug 13 14:55 stderr.txt -rw-------. 1 grid grid 517 Aug 13 14:55 tMCNDmX6YHvnShfckohDCDFpABFKDmABFKDmhp3ZDmABFKDmTyJRem.diag -rw-rw-r--. 1 grid grid 107 Aug 13 11:33 wrapper_26015_x86_64-pc-linux-gnu -rw-rw-r--. 1 grid grid 28 Aug 13 14:55 wrapper_checkpoint.txt running start_atlas return value is 0 Parent exit 0 child process exit 0 14:55:12 (29888): run_atlas exited; CPU time 45042.477262 14:55:12 (29888): called boinc_finish(0) </stderr_txt> ]]>
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