Name | 0GaLDmC5dHvnShfckohDCDFpABFKDmABFKDmDQCaDmABFKDmZYpqQm_0 |
Workunit | 1916946 |
Created | 13 Aug 2019, 4:59:35 UTC |
Sent | 13 Aug 2019, 8:20:27 UTC |
Report deadline | 20 Aug 2019, 8:20:27 UTC |
Received | 13 Aug 2019, 18:15:48 UTC |
Server state | Over |
Outcome | Success |
Client state | Done |
Exit status | 0 (0x00000000) |
Computer ID | 3911 |
Run time | 2 hours 1 min 26 sec |
CPU time | 7 hours 24 min 28 sec |
Validate state | Valid |
Credit | 215.20 |
Device peak FLOPS | 12.76 GFLOPS |
Application version | ATLAS Simulation v0.71 (native_mt) x86_64-pc-linux-gnu |
Peak working set size | 1.80 GB |
Peak swap size | 2.55 GB |
Peak disk usage | 847.18 MB |
<core_client_version>7.7.0</core_client_version> <![CDATA[ <stderr_txt> 17:13:59 (19887): wrapper (7.7.26015): starting 17:13:59 (19887): wrapper: running run_atlas (--nthreads 4) singularity image is /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sys.argv = ['run_atlas', '--nthreads', '4'] THREADS=4 Checking for CVMFS CVMFS is installed OS:CentOS Linux release 7.6.1810 (Core) This is not SLC6, need to run with Singularity.... Checking Singularity... Singularity is not installed, using version from CVMFS Testing the function of Singularity... Checking singularity with cmd:/cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 hostname Singularity Works... copy /home/grid/slots/0/shared/ATLAS.root_0 copy /home/grid/slots/0/shared/input.tar.gz copy /home/grid/slots/0/shared/RTE.tar.gz copy /home/grid/slots/0/shared/start_atlas.sh export ATHENA_PROC_NUMBER=4;start atlas job with PandaID=4446336379 cmd = /cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec --pwd /home/grid/slots/0 -B /cvmfs,/home /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sh start_atlas.sh > runtime_log 2> runtime_log.err running cmd return value is 0 Moving ./HITS.18604991._045879.pool.root.1 to shared/HITS.pool.root.1 *****************The last 100 lines of the pilot log****************** 2019-08-13 17:14:53,212 | INFO | retrieve | pilot.util.auxiliary | make_job_report | 2019-08-13 17:14:53,213 | INFO | retrieve | pilot.util.auxiliary | make_job_report | job summary report 2019-08-13 17:14:53,213 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-08-13 17:14:53,213 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4446336379 2019-08-13 17:14:53,213 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18604991 2019-08-13 17:14:53,213 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none) 2019-08-13 17:14:53,213 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE 2019-08-13 17:14:53,213 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished 2019-08-13 17:14:53,213 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0 2019-08-13 17:14:53,213 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0 2019-08-13 17:14:53,213 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag: 2019-08-13 17:14:53,214 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0 2019-08-13 17:14:53,214 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK 2019-08-13 17:14:53,214 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 26779 s 2019-08-13 17:14:53,214 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 200 2019-08-13 17:14:53,214 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0 2019-08-13 17:14:53,214 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 26560 2019-08-13 17:14:53,214 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: 26560 2019-08-13 17:14:53,214 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 4 2019-08-13 17:14:53,214 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False 2019-08-13 17:14:53,214 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-08-13 17:14:53,214 | INFO | retrieve | pilot.util.auxiliary | make_job_report | 2019-08-13 17:14:53,214 | INFO | retrieve | pilot.control.job | has_job_completed | job 4446336379 has completed 2019-08-13 17:14:53,214 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called 2019-08-13 17:14:53,223 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /home/grid/slots/0/PanDA_Pilot-4446336379 2019-08-13 17:14:54,228 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [26560] 2019-08-13 17:14:54,228 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 26560 2019-08-13 17:14:54,228 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes 2019-08-13 17:14:55,233 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes 2019-08-13 17:14:55,234 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=26560 2019-08-13 17:14:55,281 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [26560] (in reverse order) 2019-08-13 17:14:55,321 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s) 2019-08-13 17:14:55,322 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs 2019-08-13 17:14:55,322 | INFO | retrieve | pilot.control.job | retrieve | ready for new job 2019-08-13 17:14:55,322 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging No handlers could be found for logger "pilot.util.mpi" 2019-08-13 17:14:55,832 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1 2019-08-13 17:15:05,877 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1 2019-08-13 17:15:05,877 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /home/grid/slots/0 2019-08-13 17:15:05,916 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (34542190592 B) 2019-08-13 17:15:05,917 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job 2019-08-13 17:15:05,917 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished 2019-08-13 17:15:05,943 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended 2019-08-13 17:15:05,972 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 15 threads 2019-08-13 17:15:05,972 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139631530579712)>, <ExcThread(job, started 139631314306816)>, <ExcThread(queue_monitor, started 139630779291392)>, <ExcThread(queue_monitoring, started 139630787684096)>, <ExcThread(job_monitor, started 139630879938304)>, <ExcThread(copytool_out, started 139631289128704)>, <ExcThread(failed_post, started 139630796076800)>, <ExcThread(payload, started 139631280736000)>, <ExcThread(validate, started 139631297521408)>, <ExcThread(data, started 139631305914112)>, <ExcThread(validate_post, started 139630888331008)>, <ExcThread(execute_payloads, started 139630770898688)>, <ExcThread(copytool_in, started 139630913509120)>, <ExcThread(validate_pre, started 139630905116416)>, <ExcThread(create_data_payload, started 139630930294528)>] 2019-08-13 17:15:06,109 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished 2019-08-13 17:15:06,345 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished 2019-08-13 17:15:06,374 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 13 threads 2019-08-13 17:15:06,375 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139631530579712)>, <ExcThread(job, started 139631314306816)>, <ExcThread(queue_monitor, started 139630779291392)>, <ExcThread(queue_monitoring, started 139630787684096)>, <ExcThread(job_monitor, started 139630879938304)>, <ExcThread(copytool_out, started 139631289128704)>, <ExcThread(failed_post, started 139630796076800)>, <ExcThread(payload, started 139631280736000)>, <ExcThread(data, started 139631305914112)>, <ExcThread(validate_post, started 139630888331008)>, <ExcThread(execute_payloads, started 139630770898688)>, <ExcThread(copytool_in, started 139630913509120)>, <ExcThread(validate_pre, started 139630905116416)>] 2019-08-13 17:15:06,446 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration 2019-08-13 17:15:06,464 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished 2019-08-13 17:15:06,586 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished 2019-08-13 17:15:06,730 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished 2019-08-13 17:15:06,747 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished 2019-08-13 17:15:06,759 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set 2019-08-13 17:15:06,759 | DEBUG | data | pilot.control.data | control | [data] control thread has finished 2019-08-13 17:15:06,777 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 8 threads 2019-08-13 17:15:06,777 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139631530579712)>, <ExcThread(job, started 139631314306816)>, <ExcThread(queue_monitor, started 139630779291392)>, <ExcThread(queue_monitoring, started 139630787684096)>, <ExcThread(job_monitor, started 139630879938304)>, <ExcThread(copytool_out, started 139631289128704)>, <ExcThread(payload, started 139631280736000)>, <ExcThread(execute_payloads, started 139630770898688)>] 2019-08-13 17:15:06,811 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set 2019-08-13 17:15:06,812 | DEBUG | job | pilot.control.job | control | [job] control thread has finished 2019-08-13 17:15:06,910 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set 2019-08-13 17:15:06,910 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished 2019-08-13 17:15:06,930 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished 2019-08-13 17:15:06,943 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 5 threads 2019-08-13 17:15:06,943 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139631530579712)>, <ExcThread(queue_monitor, started 139630779291392)>, <ExcThread(queue_monitoring, started 139630787684096)>, <ExcThread(job_monitor, started 139630879938304)>, <ExcThread(copytool_out, started 139631289128704)>] 2019-08-13 17:15:07,180 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration 2019-08-13 17:15:07,446 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished 2019-08-13 17:15:07,447 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 4 threads 2019-08-13 17:15:07,447 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139631530579712)>, <ExcThread(queue_monitor, started 139630779291392)>, <ExcThread(queue_monitoring, started 139630787684096)>, <ExcThread(job_monitor, started 139630879938304)>] 2019-08-13 17:15:07,714 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration 2019-08-13 17:15:07,714 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished 2019-08-13 17:15:07,750 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 3 threads 2019-08-13 17:15:07,750 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139631530579712)>, <ExcThread(queue_monitoring, started 139630787684096)>, <ExcThread(job_monitor, started 139630879938304)>] 2019-08-13 17:15:10,182 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished 2019-08-13 17:15:10,272 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 2 threads 2019-08-13 17:15:10,272 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139631530579712)>, <ExcThread(job_monitor, started 139630879938304)>] 2019-08-13 17:15:24,658 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 61 s) 2019-08-13 17:15:24,658 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished 2019-08-13 17:15:24,669 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0) 2019-08-13 17:15:24,670 | INFO | MainThread | root | wrap_up | traces error code: 0 2019-08-13 17:15:24,670 | INFO | MainThread | root | wrap_up | pilot has finished 2019-08-13 17:15:24 UTC [wrapper] ==== pilot stdout END ==== 2019-08-13 17:15:24 UTC [wrapper] ==== wrapper stdout RESUME ==== 2019-08-13 17:15:24 UTC [wrapper] Pilot exit status: 0 2019-08-13 17:15:24 UTC [wrapper] STATUSCODE: 0 2019-08-13 17:15:24 UTC [wrapper] apfmon messages muted ---- find pandaID.out ---- total 44 -rw-------. 1 grid grid 11357 Jul 25 16:38 LICENSE drwx------. 14 grid grid 216 Aug 13 17:14 pilot -rwx------. 1 grid grid 20463 Jul 25 16:38 pilot.py -rw-------. 1 grid grid 8 Aug 7 13:02 PILOTVERSION -rw-------. 1 grid grid 2251 Jul 25 16:38 README.md -rw-------. 1 grid grid 221 Jul 25 16:38 TODO.md 2019-08-13 17:15:24 UTC [wrapper] Test setup, not cleaning 2019-08-13 17:15:24 UTC [wrapper] ==== wrapper stdout END ==== 2019-08-13 17:15:24 UTC [wrapper] ==== wrapper stderr END ==== 2019-08-13 17:15:24 UTC [wrapper] wrapper wrapperexiting ec=0, duration=7280 2019-08-13 17:15:25 UTC [wrapper] apfmon messages muted ***************diag file************ runtimeenvironments=APPS/HEP/ATLAS-SITE; Processors=1 WallTime=7280.85s KernelTime=230.43s UserTime=26667.87s CPUUsage=369% MaxResidentMemory=1944648kB AverageResidentMemory=0kB AverageTotalMemory=0kB AverageUnsharedMemory=0kB AverageUnsharedStack=0kB AverageSharedMemory=0kB PageSize=4096B MajorPageFaults=294077 MinorPageFaults=13374473 Swaps=0 ForcedSwitches=3081953 WaitSwitches=5814627 Inputs=71585424 Outputs=497168 SocketReceived=0 SocketSent=0 Signals=0 nodename=David_Cameron@dcameron04.cern.ch exitcode=0 ******************************WorkDir*********************** total 383348 drwxrwx--x. 6 grid grid 4096 Aug 13 19:15 . drwxr-x--x. 3 grid grid 15 Aug 8 09:08 .. -rw-------. 1 grid grid 516 Aug 13 19:15 0GaLDmC5dHvnShfckohDCDFpABFKDmABFKDmDQCaDmABFKDmZYpqQm.diag -rw-------. 1 grid grid 7409110 Aug 13 17:14 agis_ddmendpoints.json -rw-------. 1 grid grid 4517756 Aug 13 17:14 agis_schedconf.cvmfs.json drwx------. 2 grid grid 6 Aug 13 17:14 .alrb drwxr-xr-x. 3 grid grid 17 Aug 13 17:14 APPS -rw-------. 1 grid grid 538 Aug 13 17:14 .asetup -rw-------. 1 grid grid 826 Aug 13 17:15 .asetup.save -rw-rw-r--. 1 grid grid 0 Aug 13 17:13 boinc_lockfile -rw-rw-r--. 1 grid grid 8192 Aug 13 19:15 boinc_mmap_file -rw-rw-r--. 1 grid grid 536 Aug 13 19:08 boinc_task_state.xml -rw-rw-r--. 1 grid grid 378584498 Aug 13 17:14 EVNT.17323818._001242.pool.root.1 -rw-------. 1 grid grid 79779 Aug 13 19:14 heartbeat.json -rw-rw-r--. 1 grid grid 5863 Aug 13 17:13 init_data.xml -rw-rw-r--. 1 grid grid 261624 Aug 13 17:14 input.tar.gz -rw-rw-r--. 1 grid grid 112 Aug 13 17:13 job.xml -rw-------. 1 grid grid 456613 Aug 13 19:15 log.18604991._045879.job.log.1 -rw-------. 1 grid grid 822835 Aug 13 19:14 log.18604991._045879.job.log.tgz.1 -rw-------. 1 grid grid 391 Aug 13 19:15 output.list -rw-------. 1 grid grid 2872 Aug 13 06:59 pandaJobData.out drwx------. 3 grid grid 174 Aug 7 13:02 pilot2 -rw-r--r--. 1 grid grid 253018 Aug 13 06:30 pilot2.tar.gz -rw-------. 1 grid grid 9742 Aug 13 19:15 pilotlog.txt -rw-r--r--. 1 grid grid 4468 Aug 13 06:57 queuedata.json -rw-rw-r--. 1 grid grid 815 Aug 13 17:14 RTE.tar.gz -rwxr-xr-x. 1 grid grid 8779 Aug 13 17:13 run_atlas -rwx------. 1 grid grid 12641 Aug 13 06:59 runpilot2-wrapper.sh -rw-rw-r--. 1 grid grid 692 Aug 13 19:15 runtime_log -rw-rw-r--. 1 grid grid 6807 Aug 13 19:15 runtime_log.err drwxrwx--x. 2 grid grid 131 Aug 13 19:15 shared -rw-rw-r--. 1 grid grid 8688 Aug 13 17:14 start_atlas.sh -rw-rw-r--. 1 grid grid 17984 Aug 13 19:15 stderr.txt -rw-rw-r--. 1 grid grid 107 Aug 13 17:13 wrapper_26015_x86_64-pc-linux-gnu -rw-rw-r--. 1 grid grid 27 Aug 13 19:15 wrapper_checkpoint.txt running start_atlas return value is 0 Parent exit 0 child process exit 0 19:15:25 (19887): run_atlas exited; CPU time 26668.284072 19:15:25 (19887): called boinc_finish(0) </stderr_txt> ]]>
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