Name | MM7MDm8DcGvnShfckohDCDFpABFKDmABFKDmf6WYDmABFKDmrnxxxm_1 |
Workunit | 1915861 |
Created | 13 Aug 2019, 12:14:46 UTC |
Sent | 14 Aug 2019, 6:12:41 UTC |
Report deadline | 21 Aug 2019, 6:12:41 UTC |
Received | 14 Aug 2019, 15:52:46 UTC |
Server state | Over |
Outcome | Success |
Client state | Done |
Exit status | 0 (0x00000000) |
Computer ID | 3911 |
Run time | 2 hours 14 min 31 sec |
CPU time | 8 hours 12 min 41 sec |
Validate state | Valid |
Credit | 238.38 |
Device peak FLOPS | 12.76 GFLOPS |
Application version | ATLAS Simulation v0.71 (native_mt) x86_64-pc-linux-gnu |
Peak working set size | 1.79 GB |
Peak swap size | 2.56 GB |
Peak disk usage | 536.49 MB |
<core_client_version>7.7.0</core_client_version> <![CDATA[ <stderr_txt> 14:37:57 (14871): wrapper (7.7.26015): starting 14:37:57 (14871): wrapper: running run_atlas (--nthreads 4) singularity image is /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sys.argv = ['run_atlas', '--nthreads', '4'] THREADS=4 Checking for CVMFS CVMFS is installed OS:CentOS Linux release 7.6.1810 (Core) This is not SLC6, need to run with Singularity.... Checking Singularity... Singularity is not installed, using version from CVMFS Testing the function of Singularity... Checking singularity with cmd:/cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 hostname Singularity Works... copy /home/grid/slots/0/shared/ATLAS.root_0 copy /home/grid/slots/0/shared/input.tar.gz copy /home/grid/slots/0/shared/RTE.tar.gz copy /home/grid/slots/0/shared/start_atlas.sh export ATHENA_PROC_NUMBER=4;start atlas job with PandaID=4442745455 cmd = /cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec --pwd /home/grid/slots/0 -B /cvmfs,/home /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sh start_atlas.sh > runtime_log 2> runtime_log.err running cmd return value is 0 Moving ./HITS.18722398._016087.pool.root.1 to shared/HITS.pool.root.1 *****************The last 100 lines of the pilot log****************** 2019-08-14 14:51:55,251 | DEBUG | queue_monitor | pilot.control.job | send_state | wrote heartbeat to file /home/grid/slots/0/heartbeat.json 2019-08-14 14:51:55,251 | INFO | queue_monitor | pilot.control.job | queue_monitor | job 4442745455 was dequeued from the monitored payloads queue 2019-08-14 14:51:55,773 | INFO | retrieve | pilot.util.auxiliary | make_job_report | 2019-08-14 14:51:55,774 | INFO | retrieve | pilot.util.auxiliary | make_job_report | job summary report 2019-08-14 14:51:55,774 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-08-14 14:51:55,774 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4442745455 2019-08-14 14:51:55,774 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18722398 2019-08-14 14:51:55,774 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none) 2019-08-14 14:51:55,774 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE 2019-08-14 14:51:55,774 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished 2019-08-14 14:51:55,774 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0 2019-08-14 14:51:55,774 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0 2019-08-14 14:51:55,775 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag: 2019-08-14 14:51:55,775 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0 2019-08-14 14:51:55,775 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK 2019-08-14 14:51:55,775 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 29667 s 2019-08-14 14:51:55,775 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 200 2019-08-14 14:51:55,775 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0 2019-08-14 14:51:55,775 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 21544 2019-08-14 14:51:55,775 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: 21544 2019-08-14 14:51:55,775 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 4 2019-08-14 14:51:55,775 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False 2019-08-14 14:51:55,775 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-08-14 14:51:55,775 | INFO | retrieve | pilot.util.auxiliary | make_job_report | 2019-08-14 14:51:55,775 | INFO | retrieve | pilot.control.job | has_job_completed | job 4442745455 has completed 2019-08-14 14:51:55,775 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called 2019-08-14 14:51:55,783 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /home/grid/slots/0/PanDA_Pilot-4442745455 2019-08-14 14:51:56,789 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [21544] 2019-08-14 14:51:56,789 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 21544 2019-08-14 14:51:56,789 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes 2019-08-14 14:51:57,795 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes 2019-08-14 14:51:57,795 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=21544 2019-08-14 14:51:57,869 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [21544] (in reverse order) 2019-08-14 14:51:57,970 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s) 2019-08-14 14:51:57,970 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs 2019-08-14 14:51:57,971 | INFO | retrieve | pilot.control.job | retrieve | ready for new job 2019-08-14 14:51:57,971 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging No handlers could be found for logger "pilot.util.mpi" 2019-08-14 14:51:58,484 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1 2019-08-14 14:52:08,518 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1 2019-08-14 14:52:08,518 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /home/grid/slots/0 2019-08-14 14:52:08,576 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (35399925760 B) 2019-08-14 14:52:08,576 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job 2019-08-14 14:52:08,577 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished 2019-08-14 14:52:08,741 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished 2019-08-14 14:52:08,749 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration 2019-08-14 14:52:08,749 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished 2019-08-14 14:52:08,771 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration 2019-08-14 14:52:08,888 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 14 threads 2019-08-14 14:52:08,888 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140056080492288)>, <ExcThread(job, started 140055864219392)>, <ExcThread(queue_monitoring, started 140055460968192)>, <ExcThread(payload, started 140055813863168)>, <ExcThread(queue_monitor, started 140055452575488)>, <ExcThread(monitor, started 140055435790080)>, <ExcThread(data, started 140055830648576)>, <ExcThread(execute_payloads, started 140054722770688)>, <ExcThread(validate_post, started 140055419004672)>, <ExcThread(job_monitor, started 140055805470464)>, <ExcThread(failed_post, started 140055410611968)>, <ExcThread(validate, started 140055855826688)>, <ExcThread(copytool_in, started 140055444182784)>, <ExcThread(copytool_out, started 140055822255872)>] 2019-08-14 14:52:08,957 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended 2019-08-14 14:52:09,017 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished 2019-08-14 14:52:09,058 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished 2019-08-14 14:52:09,200 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set 2019-08-14 14:52:09,201 | DEBUG | data | pilot.control.data | control | [data] control thread has finished 2019-08-14 14:52:09,245 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set 2019-08-14 14:52:09,245 | DEBUG | job | pilot.control.job | control | [job] control thread has finished 2019-08-14 14:52:09,291 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 9 threads 2019-08-14 14:52:09,292 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140056080492288)>, <ExcThread(queue_monitoring, started 140055460968192)>, <ExcThread(payload, started 140055813863168)>, <ExcThread(queue_monitor, started 140055452575488)>, <ExcThread(execute_payloads, started 140054722770688)>, <ExcThread(job_monitor, started 140055805470464)>, <ExcThread(failed_post, started 140055410611968)>, <ExcThread(validate, started 140055855826688)>, <ExcThread(copytool_out, started 140055822255872)>] 2019-08-14 14:52:09,510 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished 2019-08-14 14:52:09,526 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished 2019-08-14 14:52:09,615 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set 2019-08-14 14:52:09,615 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished 2019-08-14 14:52:09,631 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 6 threads 2019-08-14 14:52:09,631 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140056080492288)>, <ExcThread(queue_monitoring, started 140055460968192)>, <ExcThread(queue_monitor, started 140055452575488)>, <ExcThread(job_monitor, started 140055805470464)>, <ExcThread(failed_post, started 140055410611968)>, <ExcThread(copytool_out, started 140055822255872)>] 2019-08-14 14:52:09,749 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished 2019-08-14 14:52:09,833 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 5 threads 2019-08-14 14:52:09,833 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140056080492288)>, <ExcThread(queue_monitoring, started 140055460968192)>, <ExcThread(queue_monitor, started 140055452575488)>, <ExcThread(job_monitor, started 140055805470464)>, <ExcThread(failed_post, started 140055410611968)>] 2019-08-14 14:52:10,040 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished 2019-08-14 14:52:10,136 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 4 threads 2019-08-14 14:52:10,137 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140056080492288)>, <ExcThread(queue_monitoring, started 140055460968192)>, <ExcThread(queue_monitor, started 140055452575488)>, <ExcThread(job_monitor, started 140055805470464)>] 2019-08-14 14:52:10,279 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration 2019-08-14 14:52:10,280 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished 2019-08-14 14:52:10,339 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 3 threads 2019-08-14 14:52:10,340 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140056080492288)>, <ExcThread(queue_monitoring, started 140055460968192)>, <ExcThread(job_monitor, started 140055805470464)>] 2019-08-14 14:52:11,774 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished 2019-08-14 14:52:11,859 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 2 threads 2019-08-14 14:52:11,859 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140056080492288)>, <ExcThread(job_monitor, started 140055805470464)>] 2019-08-14 14:52:26,109 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 62 s) 2019-08-14 14:52:26,109 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished 2019-08-14 14:52:26,109 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0) 2019-08-14 14:52:26,110 | INFO | MainThread | root | wrap_up | traces error code: 0 2019-08-14 14:52:26,110 | INFO | MainThread | root | wrap_up | pilot has finished 2019-08-14 14:52:26 UTC [wrapper] ==== pilot stdout END ==== 2019-08-14 14:52:26 UTC [wrapper] ==== wrapper stdout RESUME ==== 2019-08-14 14:52:26 UTC [wrapper] Pilot exit status: 0 2019-08-14 14:52:26 UTC [wrapper] STATUSCODE: 0 2019-08-14 14:52:26 UTC [wrapper] apfmon messages muted ---- find pandaID.out ---- total 44 -rw-------. 1 grid grid 11357 Jul 25 16:38 LICENSE drwx------. 14 grid grid 216 Aug 14 14:38 pilot -rwx------. 1 grid grid 20463 Jul 25 16:38 pilot.py -rw-------. 1 grid grid 8 Aug 7 13:02 PILOTVERSION -rw-------. 1 grid grid 2251 Jul 25 16:38 README.md -rw-------. 1 grid grid 221 Jul 25 16:38 TODO.md 2019-08-14 14:52:26 UTC [wrapper] Test setup, not cleaning 2019-08-14 14:52:26 UTC [wrapper] ==== wrapper stdout END ==== 2019-08-14 14:52:26 UTC [wrapper] ==== wrapper stderr END ==== ***************diag file************ runtimeenvironments=APPS/HEP/ATLAS-SITE; Processors=1 WallTime=8066.05s KernelTime=251.94s UserTime=29560.58s CPUUsage=369% MaxResidentMemory=1945080kB AverageResidentMemory=0kB AverageTotalMemory=0kB AverageUnsharedMemory=0kB AverageUnsharedStack=0kB AverageSharedMemory=0kB PageSize=4096B MajorPageFaults=309807 MinorPageFaults=14051549 Swaps=0 ForcedSwitches=3428090 WaitSwitches=6194019 Inputs=75600464 Outputs=588648 SocketReceived=0 SocketSent=0 Signals=0 nodename=David_Cameron@dcameron04.cern.ch exitcode=0 ******************************WorkDir*********************** total 215128 drwxrwx--x. 7 grid grid 4096 Aug 14 16:52 . drwxr-x--x. 3 grid grid 15 Aug 8 09:08 .. -rw-------. 1 grid grid 7409110 Aug 14 14:38 agis_ddmendpoints.json -rw-------. 1 grid grid 4460778 Aug 14 14:38 agis_schedconf.cvmfs.json drwx------. 2 grid grid 6 Aug 14 14:38 .alrb drwxr-xr-x. 3 grid grid 17 Aug 14 14:38 APPS drwxr-xr-x. 2 grid grid 6 Aug 14 14:38 .arc -rw-------. 1 grid grid 538 Aug 14 14:38 .asetup -rw-------. 1 grid grid 826 Aug 14 14:39 .asetup.save -rw-rw-r--. 1 grid grid 0 Aug 14 14:37 boinc_lockfile -rw-rw-r--. 1 grid grid 8192 Aug 14 16:52 boinc_mmap_file -rw-rw-r--. 1 grid grid 536 Aug 14 16:46 boinc_task_state.xml -rw-rw-r--. 1 grid grid 206346945 Aug 14 14:38 EVNT.18605775._000316.pool.root.1 -rw-------. 1 grid grid 76680 Aug 14 16:51 heartbeat.json -rw-rw-r--. 1 grid grid 5866 Aug 14 14:37 init_data.xml -rw-rw-r--. 1 grid grid 262352 Aug 14 14:38 input.tar.gz -rw-rw-r--. 1 grid grid 112 Aug 14 14:37 job.xml -rw-------. 1 grid grid 481981 Aug 14 16:52 log.18722398._016087.job.log.1 -rw-------. 1 grid grid 829951 Aug 14 16:51 log.18722398._016087.job.log.tgz.1 -rw-------. 1 grid grid 516 Aug 14 16:52 MM7MDm8DcGvnShfckohDCDFpABFKDmABFKDmf6WYDmABFKDmrnxxxm.diag -rw-------. 1 grid grid 391 Aug 14 16:52 output.list -rw-------. 1 grid grid 2957 Aug 10 10:48 pandaJobData.out drwx------. 3 grid grid 174 Aug 7 13:02 pilot2 -rw-r--r--. 1 grid grid 253018 Aug 10 10:36 pilot2.tar.gz -rw-------. 1 grid grid 9386 Aug 14 16:52 pilotlog.txt -rw-r--r--. 1 grid grid 4468 Aug 10 10:46 queuedata.json -rw-rw-r--. 1 grid grid 815 Aug 14 14:38 RTE.tar.gz -rwxr-xr-x. 1 grid grid 8779 Aug 14 14:37 run_atlas -rwx------. 1 grid grid 15232 Aug 10 10:48 runpilot2-wrapper.sh -rw-rw-r--. 1 grid grid 692 Aug 14 16:52 runtime_log -rw-rw-r--. 1 grid grid 6807 Aug 14 16:52 runtime_log.err drwxrwx--x. 2 grid grid 131 Aug 14 16:52 shared -rw-rw-r--. 1 grid grid 8688 Aug 14 14:38 start_atlas.sh -rw-rw-r--. 1 grid grid 17859 Aug 14 16:52 stderr.txt -rw-rw-r--. 1 grid grid 107 Aug 14 14:37 wrapper_26015_x86_64-pc-linux-gnu -rw-rw-r--. 1 grid grid 27 Aug 14 16:52 wrapper_checkpoint.txt running start_atlas return value is 0 Parent exit 0 child process exit 0 16:52:27 (14871): run_atlas exited; CPU time 29561.004003 16:52:27 (14871): called boinc_finish(0) </stderr_txt> ]]>
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