| Name | quOKDmnKlIvnShfckohDCDFpABFKDmABFKDmIMOKDmABFKDmuGVgGm_0 |
| Workunit | 1918043 |
| Created | 16 Aug 2019, 6:56:46 UTC |
| Sent | 16 Aug 2019, 7:01:56 UTC |
| Report deadline | 23 Aug 2019, 7:01:56 UTC |
| Received | 16 Aug 2019, 20:50:50 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 3848 |
| Run time | 12 hours 39 min 20 sec |
| CPU time | 13 hours 13 min 47 sec |
| Validate state | Valid |
| Credit | 328.19 |
| Device peak FLOPS | 3.11 GFLOPS |
| Application version | ATLAS Simulation v0.71 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.83 GB |
| Peak swap size | 2.77 GB |
| Peak disk usage | 841.44 MB |
Stderr output
<core_client_version>7.14.2</core_client_version> <![CDATA[ <stderr_txt> 09:03:25 (17252): wrapper (7.7.26015): starting 09:03:25 (17252): wrapper: running run_atlas (--nthreads 1) singularity image is /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sys.argv = ['run_atlas', '--nthreads', '1'] THREADS=1 Checking for CVMFS CVMFS is installed OS:CentOS Linux release 7.4.1708 (Core) This is not SLC6, need to run with Singularity.... Checking Singularity... Singularity is installed, version 2.6.1-dist Testing the function of Singularity... Checking singularity with cmd:singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 hostname Singularity Works... copy /root/slots/9/shared/ATLAS.root_0 copy /root/slots/9/shared/input.tar.gz copy /root/slots/9/shared/RTE.tar.gz copy /root/slots/9/shared/start_atlas.sh start atlas job with PandaID=4450898395 cmd = singularity exec --pwd /root/slots/9 -B /cvmfs,/root /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sh start_atlas.sh > runtime_log 2> runtime_log.err 10:54:27 (3235): wrapper (7.7.26015): starting 10:54:27 (3235): wrapper: running run_atlas (--nthreads 1) singularity image is /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sys.argv = ['run_atlas', '--nthreads', '1'] THREADS=1 This is not an Event Service job This is trying to run the run_atlas wrapper for the 2nd time,but it is not an Event Service job,so will restart the job output.list does not exist... Removing existing pilot dir PanDA_Pilot-4450898395Checking for CVMFS CVMFS is installed OS:CentOS Linux release 7.4.1708 (Core) This is not SLC6, need to run with Singularity.... Checking Singularity... Singularity is installed, version 2.6.1-dist Testing the function of Singularity... Checking singularity with cmd:singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 hostname Singularity Works... copy /root/slots/9/shared/ATLAS.root_0 copy /root/slots/9/shared/input.tar.gz copy /root/slots/9/shared/RTE.tar.gz copy /root/slots/9/shared/start_atlas.sh start atlas job with PandaID=4450898395 cmd = singularity exec --pwd /root/slots/9 -B /cvmfs,/root /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sh start_atlas.sh > runtime_log 2> runtime_log.err running cmd return value is 0 Moving ./HITS.18604991._051658.pool.root.1 to shared/HITS.pool.root.1 *****************The last 100 lines of the pilot log****************** 2019-08-16 20:48:40,214 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18604991 2019-08-16 20:48:40,214 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none) 2019-08-16 20:48:40,214 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE 2019-08-16 20:48:40,214 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished 2019-08-16 20:48:40,214 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0 2019-08-16 20:48:40,214 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0 2019-08-16 20:48:40,214 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag: 2019-08-16 20:48:40,214 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0 2019-08-16 20:48:40,214 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK 2019-08-16 20:48:40,214 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 43190 s 2019-08-16 20:48:40,215 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 200 2019-08-16 20:48:40,215 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0 2019-08-16 20:48:40,215 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 9880 2019-08-16 20:48:40,215 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: 9880 2019-08-16 20:48:40,215 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 1 2019-08-16 20:48:40,215 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False 2019-08-16 20:48:40,215 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-08-16 20:48:40,215 | INFO | retrieve | pilot.util.auxiliary | make_job_report | 2019-08-16 20:48:40,215 | INFO | retrieve | pilot.control.job | has_job_completed | job 4450898395 has completed 2019-08-16 20:48:40,215 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called 2019-08-16 20:48:40,217 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /root/slots/9/PanDA_Pilot-4450898395 2019-08-16 20:48:41,222 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [9880] 2019-08-16 20:48:41,223 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 9880 2019-08-16 20:48:41,223 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes 2019-08-16 20:48:42,229 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes 2019-08-16 20:48:42,229 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=9880 2019-08-16 20:48:42,399 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [9880] (in reverse order) 2019-08-16 20:48:42,618 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s) 2019-08-16 20:48:42,618 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs 2019-08-16 20:48:42,618 | INFO | retrieve | pilot.control.job | retrieve | ready for new job 2019-08-16 20:48:42,618 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging No handlers could be found for logger "pilot.util.mpi" 2019-08-16 20:48:43,144 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1 2019-08-16 20:48:53,186 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1 2019-08-16 20:48:53,187 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /root/slots/9 2019-08-16 20:48:53,300 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (8568963072 B) 2019-08-16 20:48:53,300 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job 2019-08-16 20:48:53,300 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished 2019-08-16 20:48:53,313 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished 2019-08-16 20:48:53,332 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended 2019-08-16 20:48:53,334 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 14 threads 2019-08-16 20:48:53,334 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140137331050240)>, <ExcThread(job, started 140137114777344)>, <ExcThread(data, started 140137106384640)>, <ExcThread(job_monitor, started 140136687838976)>, <ExcThread(validate_pre, started 140136704624384)>, <ExcThread(queue_monitor, started 140136679446272)>, <ExcThread(copytool_in, started 140136192931584)>, <ExcThread(create_data_payload, started 140136721409792)>, <ExcThread(payload, started 140136729802496)>, <ExcThread(failed_post, started 140136176146176)>, <ExcThread(queue_monitoring, started 140137089599232)>, <ExcThread(execute_payloads, started 140136167753472)>, <ExcThread(copytool_out, started 140137097991936)>, <ExcThread(validate, started 140137081206528)>] 2019-08-16 20:48:53,337 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished 2019-08-16 20:48:53,590 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished 2019-08-16 20:48:53,654 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished 2019-08-16 20:48:53,669 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set 2019-08-16 20:48:53,669 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished 2019-08-16 20:48:53,680 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 10 threads 2019-08-16 20:48:53,680 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140137331050240)>, <ExcThread(job, started 140137114777344)>, <ExcThread(data, started 140137106384640)>, <ExcThread(job_monitor, started 140136687838976)>, <ExcThread(validate_pre, started 140136704624384)>, <ExcThread(queue_monitor, started 140136679446272)>, <ExcThread(create_data_payload, started 140136721409792)>, <ExcThread(failed_post, started 140136176146176)>, <ExcThread(queue_monitoring, started 140137089599232)>, <ExcThread(copytool_out, started 140137097991936)>] 2019-08-16 20:48:53,680 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished 2019-08-16 20:48:53,820 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration 2019-08-16 20:48:53,836 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set 2019-08-16 20:48:53,837 | DEBUG | data | pilot.control.data | control | [data] control thread has finished 2019-08-16 20:48:53,892 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 8 threads 2019-08-16 20:48:53,892 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140137331050240)>, <ExcThread(job, started 140137114777344)>, <ExcThread(job_monitor, started 140136687838976)>, <ExcThread(queue_monitor, started 140136679446272)>, <ExcThread(create_data_payload, started 140136721409792)>, <ExcThread(failed_post, started 140136176146176)>, <ExcThread(queue_monitoring, started 140137089599232)>, <ExcThread(copytool_out, started 140137097991936)>] 2019-08-16 20:48:54,119 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished 2019-08-16 20:48:54,368 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 7 threads 2019-08-16 20:48:54,368 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140137331050240)>, <ExcThread(job, started 140137114777344)>, <ExcThread(job_monitor, started 140136687838976)>, <ExcThread(queue_monitor, started 140136679446272)>, <ExcThread(create_data_payload, started 140136721409792)>, <ExcThread(queue_monitoring, started 140137089599232)>, <ExcThread(copytool_out, started 140137097991936)>] 2019-08-16 20:48:54,423 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set 2019-08-16 20:48:54,424 | DEBUG | job | pilot.control.job | control | [job] control thread has finished 2019-08-16 20:48:54,488 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration 2019-08-16 20:48:54,494 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 6 threads 2019-08-16 20:48:54,494 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140137331050240)>, <ExcThread(job_monitor, started 140136687838976)>, <ExcThread(queue_monitor, started 140136679446272)>, <ExcThread(create_data_payload, started 140136721409792)>, <ExcThread(queue_monitoring, started 140137089599232)>, <ExcThread(copytool_out, started 140137097991936)>] 2019-08-16 20:48:54,670 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration 2019-08-16 20:48:54,670 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished 2019-08-16 20:48:54,708 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 5 threads 2019-08-16 20:48:54,708 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140137331050240)>, <ExcThread(job_monitor, started 140136687838976)>, <ExcThread(create_data_payload, started 140136721409792)>, <ExcThread(queue_monitoring, started 140137089599232)>, <ExcThread(copytool_out, started 140137097991936)>] 2019-08-16 20:48:54,719 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished 2019-08-16 20:48:54,841 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 4 threads 2019-08-16 20:48:54,841 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140137331050240)>, <ExcThread(job_monitor, started 140136687838976)>, <ExcThread(queue_monitoring, started 140137089599232)>, <ExcThread(copytool_out, started 140137097991936)>] 2019-08-16 20:48:54,841 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished 2019-08-16 20:48:54,956 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 3 threads 2019-08-16 20:48:54,956 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140137331050240)>, <ExcThread(job_monitor, started 140136687838976)>, <ExcThread(queue_monitoring, started 140137089599232)>] 2019-08-16 20:48:57,622 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished 2019-08-16 20:48:57,749 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 2 threads 2019-08-16 20:48:57,749 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140137331050240)>, <ExcThread(job_monitor, started 140136687838976)>] 2019-08-16 20:49:40,013 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 62 s) 2019-08-16 20:49:40,013 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished 2019-08-16 20:49:40,109 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0) 2019-08-16 20:49:40,109 | INFO | MainThread | root | wrap_up | traces error code: 0 2019-08-16 20:49:40,109 | INFO | MainThread | root | wrap_up | pilot has finished 2019-08-16 20:49:40 UTC [wrapper] ==== pilot stdout END ==== 2019-08-16 20:49:40 UTC [wrapper] ==== wrapper stdout RESUME ==== 2019-08-16 20:49:40 UTC [wrapper] Pilot exit status: 0 2019-08-16 20:49:40 UTC [wrapper] STATUSCODE: 0 2019-08-16 20:49:40 UTC [wrapper] apfmon messages muted ---- find pandaID.out ---- insgesamt 44 -rw-rw-r--. 1 320 320 11357 25. Jul 16:38 LICENSE drwxrwxr-x. 14 320 320 216 25. Jul 16:38 pilot -rwxrwxr-x. 1 320 320 20463 25. Jul 16:38 pilot.py -rw-r--r--. 1 320 320 8 7. Aug 13:02 PILOTVERSION -rw-rw-r--. 1 320 320 2251 25. Jul 16:38 README.md -rw-rw-r--. 1 320 320 221 25. Jul 16:38 TODO.md 2019-08-16 20:49:41 UTC [wrapper] Test setup, not cleaning 2019-08-16 20:49:41 UTC [wrapper] ==== wrapper stdout END ==== 2019-08-16 20:49:41 UTC [wrapper] ==== wrapper stderr END ==== 2019-08-16 20:49:41 UTC [wrapper] wrapper wrapperexiting ec=0, duration=42906 2019-08-16 20:49:41 UTC [wrapper] apfmon messages muted ***************diag file************ runtimeenvironments=APPS/HEP/ATLAS-SITE; Processors=1 runtimeenvironments=APPS/HEP/ATLAS-SITE; Processors=1 WallTime=42906.10s KernelTime=7615.10s UserTime=41494.30s CPUUsage=114% MaxResidentMemory=1953908kB AverageResidentMemory=0kB AverageTotalMemory=0kB AverageUnsharedMemory=0kB AverageUnsharedStack=0kB AverageSharedMemory=0kB PageSize=4096B MajorPageFaults=835343 MinorPageFaults=25304574 Swaps=0 ForcedSwitches=1000121 WaitSwitches=20805592 Inputs=194351792 Outputs=282792 SocketReceived=0 SocketSent=0 Signals=0 nodename=maeax@ryzcos7 exitcode=0 ******************************WorkDir*********************** insgesamt 382368 drwxrwx--x. 6 root root 4096 16. Aug 22:49 . drwxrwx--x. 14 root root 116 16. Aug 11:23 .. -rw-------. 1 root root 7416180 16. Aug 09:10 agis_ddmendpoints.json -rw-------. 1 root root 4437667 16. Aug 10:55 agis_schedconf.cvmfs.json drwx------. 2 root root 6 16. Aug 10:54 .alrb drwxr-xr-x. 3 root root 17 16. Aug 09:04 APPS -rw-------. 1 root root 533 16. Aug 09:05 .asetup -rw-------. 1 root root 829 16. Aug 10:56 .asetup.save -rw-r--r--. 1 root root 0 16. Aug 09:03 boinc_lockfile -rw-r--r--. 1 root root 8192 16. Aug 22:49 boinc_mmap_file -rw-r--r--. 1 root root 537 16. Aug 22:47 boinc_task_state.xml -rw-------. 1 root root 58 16. Aug 09:05 .directory -rw-r--r--. 1 root root 376705075 16. Aug 10:54 EVNT.17323818._001355.pool.root.1 -rw-------. 1 root root 72365 16. Aug 22:48 heartbeat.json -rw-r--r--. 1 root root 5891 16. Aug 13:29 init_data.xml -rw-r--r--. 1 root root 261613 16. Aug 10:54 input.tar.gz -rw-r--r--. 1 root root 112 16. Aug 09:03 job.xml -rw-------. 1 root root 1899710 16. Aug 22:49 log.18604991._051658.job.log.1 -rw-------. 1 root root 319670 16. Aug 22:48 log.18604991._051658.job.log.tgz.1 -rw-------. 1 root root 391 16. Aug 22:49 output.list -rw-------. 1 4871 1028 2872 16. Aug 08:56 pandaJobData.out drwxr-xr-x. 3 320 320 174 7. Aug 13:02 pilot2 -rw-r--r--. 1 root root 253018 16. Aug 08:27 pilot2.tar.gz -rw-------. 1 root root 10808 16. Aug 22:49 pilotlog.txt -rw-r--r--. 1 root root 4468 16. Aug 08:56 queuedata.json -rw-------. 1 root root 555 16. Aug 22:49 quOKDmnKlIvnShfckohDCDFpABFKDmABFKDmIMOKDmABFKDmuGVgGm.diag -rw-r--r--. 1 root root 815 16. Aug 10:54 RTE.tar.gz -rwxr-xr-x. 1 root root 8779 16. Aug 09:03 run_atlas -rwx------. 1 4871 1028 12641 16. Aug 08:56 runpilot2-wrapper.sh -rw-r--r--. 1 root root 692 16. Aug 22:49 runtime_log -rw-r--r--. 1 root root 6648 16. Aug 22:49 runtime_log.err drwxrwx--x. 2 root root 131 16. Aug 22:49 shared -rw-r--r--. 1 root root 8659 16. Aug 10:54 start_atlas.sh -rw-r--r--. 1 root root 19519 16. Aug 22:49 stderr.txt -rw-r--r--. 1 root root 107 16. Aug 09:03 wrapper_26015_x86_64-pc-linux-gnu -rw-r--r--. 1 root root 28 16. Aug 22:49 wrapper_checkpoint.txt running start_atlas return value is 0 Parent exit 0 child process exit 0 22:49:42 (3235): run_atlas exited; CPU time 41494.818681 22:49:42 (3235): called boinc_finish(0) </stderr_txt> ]]>
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