Name | ppeNDm8OWHvnShfckohDCDFpABFKDmABFKDm9XzZDmABFKDml6aYJo_2 |
Workunit | 1916844 |
Created | 16 Aug 2019, 7:13:12 UTC |
Sent | 17 Aug 2019, 4:56:56 UTC |
Report deadline | 24 Aug 2019, 4:56:56 UTC |
Received | 17 Aug 2019, 17:10:56 UTC |
Server state | Over |
Outcome | Success |
Client state | Done |
Exit status | 0 (0x00000000) |
Computer ID | 3911 |
Run time | 3 hours 18 min 9 sec |
CPU time | 12 hours 19 min 46 sec |
Validate state | Valid |
Credit | 351.14 |
Device peak FLOPS | 12.76 GFLOPS |
Application version | ATLAS Simulation v0.72 (native_mt) x86_64-pc-linux-gnu |
Peak working set size | 1.80 GB |
Peak swap size | 3.72 GB |
Peak disk usage | 609.08 MB |
<core_client_version>7.7.0</core_client_version> <![CDATA[ <stderr_txt> 14:52:22 (11788): wrapper (7.7.26015): starting 14:52:22 (11788): wrapper: running run_atlas (--nthreads 4) 2019-08-17 14:52:22,154: singularity image is /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 2019-08-17 14:52:22,154: sys.argv = ['run_atlas', '--nthreads', '4'] 2019-08-17 14:52:22,155: THREADS=4 2019-08-17 14:52:22,157: Checking for CVMFS 2019-08-17 14:52:25,868: CVMFS is installed 2019-08-17 14:52:25,873: OS:CentOS Linux release 7.6.1810 (Core) 2019-08-17 14:52:25,873: This is not SLC6, need to run with Singularity.... 2019-08-17 14:52:25,873: Checking Singularity... 2019-08-17 14:52:25,877: Singularity is not installed, using version from CVMFS 2019-08-17 14:52:25,877: Testing the function of Singularity... 2019-08-17 14:52:25,877: Checking singularity with cmd:/cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 hostname 2019-08-17 14:52:26,152: Singularity Works... 2019-08-17 14:52:26,152: copy /home/grid/slots/0/shared/ATLAS.root_0 2019-08-17 14:52:26,575: copy /home/grid/slots/0/shared/input.tar.gz 2019-08-17 14:52:26,576: copy /home/grid/slots/0/shared/RTE.tar.gz 2019-08-17 14:52:26,576: copy /home/grid/slots/0/shared/start_atlas.sh 2019-08-17 14:52:26,576: export ATHENA_PROC_NUMBER=4; 2019-08-17 14:52:26,601: start atlas job with PandaID=4443193284 2019-08-17 14:52:26,601: cmd = /cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec --pwd /home/grid/slots/0 -B /cvmfs,/home /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sh start_atlas.sh > runtime_log 2> runtime_log.err 2019-08-17 18:10:27,705: running cmd return value is 0 2019-08-17 18:10:27,709: Moving ./HITS.18722432._019964.pool.root.1 to shared/HITS.pool.root.1 2019-08-17 18:10:27,709: *****************The last 100 lines of the pilot log****************** 2019-08-17 18:10:27,716: 2019-08-17 16:09:24,431 | INFO | retrieve | pilot.util.auxiliary | make_job_report | job summary report 2019-08-17 16:09:24,432 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-08-17 16:09:24,432 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4443193284 2019-08-17 16:09:24,432 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18722432 2019-08-17 16:09:24,432 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none) 2019-08-17 16:09:24,432 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE 2019-08-17 16:09:24,432 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished 2019-08-17 16:09:24,432 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0 2019-08-17 16:09:24,432 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0 2019-08-17 16:09:24,432 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag: 2019-08-17 16:09:24,432 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0 2019-08-17 16:09:24,432 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK 2019-08-17 16:09:24,432 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 44554 s 2019-08-17 16:09:24,432 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 200 2019-08-17 16:09:24,432 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0 2019-08-17 16:09:24,432 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 18476 2019-08-17 16:09:24,433 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: 18476 2019-08-17 16:09:24,433 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 4 2019-08-17 16:09:24,433 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False 2019-08-17 16:09:24,433 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-08-17 16:09:24,433 | INFO | retrieve | pilot.util.auxiliary | make_job_report | 2019-08-17 16:09:24,433 | INFO | retrieve | pilot.control.job | has_job_completed | job 4443193284 has completed 2019-08-17 16:09:24,433 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called 2019-08-17 16:09:24,441 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /home/grid/slots/0/PanDA_Pilot-4443193284 2019-08-17 16:09:25,447 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [18476] 2019-08-17 16:09:25,447 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 18476 2019-08-17 16:09:25,447 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes 2019-08-17 16:09:25,756 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 61 s) 2019-08-17 16:09:26,452 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes 2019-08-17 16:09:26,453 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=18476 2019-08-17 16:09:26,512 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [18476] (in reverse order) 2019-08-17 16:09:26,560 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s) 2019-08-17 16:09:26,560 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs 2019-08-17 16:09:26,560 | INFO | retrieve | pilot.control.job | retrieve | ready for new job 2019-08-17 16:09:26,560 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging No handlers could be found for logger "pilot.util.mpi" 2019-08-17 16:09:27,072 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1 2019-08-17 16:09:37,116 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1 2019-08-17 16:09:37,117 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /home/grid/slots/0 2019-08-17 16:09:37,148 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (36614176768 B) 2019-08-17 16:09:37,148 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job 2019-08-17 16:09:37,148 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished 2019-08-17 16:09:37,158 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended 2019-08-17 16:09:37,227 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished 2019-08-17 16:09:37,292 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished 2019-08-17 16:09:37,353 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 13 threads 2019-08-17 16:09:37,354 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140556514240256)>, <ExcThread(job, started 140556297967360)>, <ExcThread(job_monitor, started 140555715585792)>, <ExcThread(validate_pre, started 140556247611136)>, <ExcThread(queue_monitor, started 140555153569536)>, <ExcThread(copytool_in, started 140555723978496)>, <ExcThread(create_data_payload, started 140556239218432)>, <ExcThread(payload, started 140556272789248)>, <ExcThread(execute_payloads, started 140555707193088)>, <ExcThread(queue_monitoring, started 140555757549312)>, <ExcThread(data, started 140556289574656)>, <ExcThread(copytool_out, started 140556281181952)>, <ExcThread(failed_post, started 140555732371200)>] 2019-08-17 16:09:37,395 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration 2019-08-17 16:09:37,653 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished 2019-08-17 16:09:37,756 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 12 threads 2019-08-17 16:09:37,756 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140556514240256)>, <ExcThread(job, started 140556297967360)>, <ExcThread(job_monitor, started 140555715585792)>, <ExcThread(validate_pre, started 140556247611136)>, <ExcThread(queue_monitor, started 140555153569536)>, <ExcThread(create_data_payload, started 140556239218432)>, <ExcThread(payload, started 140556272789248)>, <ExcThread(execute_payloads, started 140555707193088)>, <ExcThread(queue_monitoring, started 140555757549312)>, <ExcThread(data, started 140556289574656)>, <ExcThread(copytool_out, started 140556281181952)>, <ExcThread(failed_post, started 140555732371200)>] 2019-08-17 16:09:37,784 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration 2019-08-17 16:09:37,803 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished 2019-08-17 16:09:37,812 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set 2019-08-17 16:09:37,812 | DEBUG | data | pilot.control.data | control | [data] control thread has finished 2019-08-17 16:09:37,941 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished 2019-08-17 16:09:38,036 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set 2019-08-17 16:09:38,036 | DEBUG | job | pilot.control.job | control | [job] control thread has finished 2019-08-17 16:09:38,057 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 8 threads 2019-08-17 16:09:38,057 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140556514240256)>, <ExcThread(job_monitor, started 140555715585792)>, <ExcThread(validate_pre, started 140556247611136)>, <ExcThread(queue_monitor, started 140555153569536)>, <ExcThread(payload, started 140556272789248)>, <ExcThread(queue_monitoring, started 140555757549312)>, <ExcThread(copytool_out, started 140556281181952)>, <ExcThread(failed_post, started 140555732371200)>] 2019-08-17 16:09:38,212 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished 2019-08-17 16:09:38,229 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set 2019-08-17 16:09:38,229 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished 2019-08-17 16:09:38,259 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 6 threads 2019-08-17 16:09:38,259 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140556514240256)>, <ExcThread(job_monitor, started 140555715585792)>, <ExcThread(queue_monitor, started 140555153569536)>, <ExcThread(queue_monitoring, started 140555757549312)>, <ExcThread(copytool_out, started 140556281181952)>, <ExcThread(failed_post, started 140555732371200)>] 2019-08-17 16:09:38,396 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished 2019-08-17 16:09:38,454 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration 2019-08-17 16:09:38,454 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished 2019-08-17 16:09:38,461 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 4 threads 2019-08-17 16:09:38,461 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140556514240256)>, <ExcThread(job_monitor, started 140555715585792)>, <ExcThread(queue_monitoring, started 140555757549312)>, <ExcThread(failed_post, started 140555732371200)>] 2019-08-17 16:09:38,747 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished 2019-08-17 16:09:38,763 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 3 threads 2019-08-17 16:09:38,763 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140556514240256)>, <ExcThread(job_monitor, started 140555715585792)>, <ExcThread(queue_monitoring, started 140555757549312)>] 2019-08-17 16:09:40,785 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished 2019-08-17 16:09:40,877 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 2 threads 2019-08-17 16:09:40,877 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140556514240256)>, <ExcThread(job_monitor, started 140555715585792)>] 2019-08-17 16:10:27,298 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 123 s) 2019-08-17 16:10:27,298 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished 2019-08-17 16:10:27,298 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0) 2019-08-17 16:10:27,299 | INFO | MainThread | root | wrap_up | traces error code: 0 2019-08-17 16:10:27,299 | INFO | MainThread | root | wrap_up | pilot has finished 2019-08-17 16:10:27 UTC [wrapper] ==== pilot stdout END ==== 2019-08-17 16:10:27 UTC [wrapper] ==== wrapper stdout RESUME ==== 2019-08-17 16:10:27 UTC [wrapper] Pilot exit status: 0 2019-08-17 16:10:27 UTC [wrapper] STATUSCODE: 0 2019-08-17 16:10:27 UTC [wrapper] apfmon messages muted ---- find pandaID.out ---- total 44 -rw-------. 1 grid grid 11357 Jul 25 16:38 LICENSE drwx------. 14 grid grid 216 Aug 17 14:52 pilot -rwx------. 1 grid grid 20463 Jul 25 16:38 pilot.py -rw-------. 1 grid grid 8 Aug 7 13:02 PILOTVERSION -rw-------. 1 grid grid 2251 Jul 25 16:38 README.md -rw-------. 1 grid grid 221 Jul 25 16:38 TODO.md 2019-08-17 16:10:27 UTC [wrapper] Test setup, not cleaning 2019-08-17 16:10:27 UTC [wrapper] ==== wrapper stdout END ==== 2019-08-17 16:10:27 UTC [wrapper] ==== wrapper stderr END ==== 2019-08-17 16:10:27 UTC [wrapper] wrapper wrapperexiting ec=0, duration=11881 2019-08-17 16:10:27 UTC [wrapper] apfmon messages muted 2019-08-17 18:10:27,720: ***************diag file************ 2019-08-17 18:10:27,720: runtimeenvironments=APPS/HEP/ATLAS-SITE; Processors=1 WallTime=11880.75s KernelTime=327.06s UserTime=44386.36s CPUUsage=376% MaxResidentMemory=1945296kB AverageResidentMemory=0kB AverageTotalMemory=0kB AverageUnsharedMemory=0kB AverageUnsharedStack=0kB AverageSharedMemory=0kB PageSize=4096B MajorPageFaults=384858 MinorPageFaults=16422164 Swaps=0 ForcedSwitches=5171705 WaitSwitches=7916010 Inputs=93141280 Outputs=759568 SocketReceived=0 SocketSent=0 Signals=0 nodename=David_Cameron@dcameron04.cern.ch exitcode=0 2019-08-17 18:10:27,729: ******************************WorkDir*********************** 2019-08-17 18:10:27,729: total 229916 drwxrwx--x. 6 grid grid 4096 Aug 17 18:10 . drwxr-x--x. 3 grid grid 15 Aug 8 09:08 .. -rw-------. 1 grid grid 7417847 Aug 17 14:52 agis_ddmendpoints.json -rw-------. 1 grid grid 4400401 Aug 17 14:52 agis_schedconf.cvmfs.json drwx------. 2 grid grid 6 Aug 17 14:52 .alrb drwxr-xr-x. 3 grid grid 17 Aug 17 14:52 APPS -rw-------. 1 grid grid 538 Aug 17 14:52 .asetup -rw-------. 1 grid grid 826 Aug 17 14:53 .asetup.save -rw-rw-r--. 1 grid grid 0 Aug 17 14:52 boinc_lockfile -rw-rw-r--. 1 grid grid 8192 Aug 17 18:09 boinc_mmap_file -rw-rw-r--. 1 grid grid 537 Aug 17 18:01 boinc_task_state.xml -rw-rw-r--. 1 grid grid 221297455 Aug 17 14:52 EVNT.18605781._000413.pool.root.1 -rw-------. 1 grid grid 124834 Aug 17 18:09 heartbeat.json -rw-rw-r--. 1 grid grid 5866 Aug 17 14:52 init_data.xml -rw-rw-r--. 1 grid grid 261630 Aug 17 14:52 input.tar.gz -rw-rw-r--. 1 grid grid 112 Aug 17 14:52 job.xml -rw-------. 1 grid grid 660272 Aug 17 18:10 log.18722432._019964.job.log.1 -rw-------. 1 grid grid 851166 Aug 17 18:09 log.18722432._019964.job.log.tgz.1 -rw-------. 1 grid grid 391 Aug 17 18:10 output.list -rw-------. 1 grid grid 2957 Aug 12 22:47 pandaJobData.out drwx------. 3 grid grid 174 Aug 7 13:02 pilot2 -rw-r--r--. 1 grid grid 253018 Aug 12 22:25 pilot2.tar.gz -rw-------. 1 grid grid 9650 Aug 17 18:10 pilotlog.txt -rw-------. 1 grid grid 517 Aug 17 18:10 ppeNDm8OWHvnShfckohDCDFpABFKDmABFKDm9XzZDmABFKDml6aYJo.diag -rw-r--r--. 1 grid grid 4468 Aug 12 22:45 queuedata.json -rw-rw-r--. 1 grid grid 815 Aug 17 14:52 RTE.tar.gz -rwxr-xr-x. 1 grid grid 8466 Aug 17 14:52 run_atlas -rwx------. 1 grid grid 12641 Aug 12 22:47 runpilot2-wrapper.sh -rw-rw-r--. 1 grid grid 692 Aug 17 18:10 runtime_log -rw-rw-r--. 1 grid grid 6807 Aug 17 18:10 runtime_log.err drwxrwx--x. 2 grid grid 131 Aug 17 18:10 shared -rw-rw-r--. 1 grid grid 8688 Aug 17 14:52 start_atlas.sh -rw-rw-r--. 1 grid grid 18578 Aug 17 18:10 stderr.txt -rw-rw-r--. 1 grid grid 107 Aug 17 14:52 wrapper_26015_x86_64-pc-linux-gnu -rw-rw-r--. 1 grid grid 28 Aug 17 18:09 wrapper_checkpoint.txt 2019-08-17 18:10:27,729: running start_atlas return value is 0 2019-08-17 18:10:27,729: Parent exit 0 2019-08-17 18:10:27,731: child process exit 0 18:10:28 (11788): run_atlas exited; CPU time 44386.752010 18:10:28 (11788): called boinc_finish(0) </stderr_txt> ]]>
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