Name | jcGKDmj5pIvnShfckohDCDFpABFKDmABFKDm55VKDmABFKDmCrj46n_0 |
Workunit | 1918149 |
Created | 16 Aug 2019, 12:01:26 UTC |
Sent | 16 Aug 2019, 23:22:51 UTC |
Report deadline | 23 Aug 2019, 23:22:51 UTC |
Received | 18 Aug 2019, 18:59:41 UTC |
Server state | Over |
Outcome | Success |
Client state | Done |
Exit status | 0 (0x00000000) |
Computer ID | 1498 |
Run time | 1 days 18 hours 37 min 29 sec |
CPU time | 1 days 17 hours 44 min 5 sec |
Validate state | Valid |
Credit | 1,169.59 |
Device peak FLOPS | 3.29 GFLOPS |
Application version | ATLAS Simulation v0.72 (native_mt) x86_64-pc-linux-gnu |
Peak working set size | 1.84 GB |
Peak swap size | 5.79 GB |
Peak disk usage | 788.44 MB |
<core_client_version>7.4.25</core_client_version> <![CDATA[ <stderr_txt> 00:37:50 (3324): wrapper (7.7.26015): starting 00:37:50 (3324): wrapper: running run_atlas (--nthreads 1) 2019-08-17 00:37:50,939: singularity image is /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 2019-08-17 00:37:50,939: sys.argv = ['run_atlas', '--nthreads', '1'] 2019-08-17 00:37:50,941: THREADS=1 2019-08-17 00:37:50,942: Checking for CVMFS 2019-08-17 00:39:52,282: CVMFS is installed 2019-08-17 00:39:52,285: OS:cat: /etc/redhat-release: No such file or directory 2019-08-17 00:39:52,285: This is not SLC6, need to run with Singularity.... 2019-08-17 00:39:52,285: Checking Singularity... 2019-08-17 00:39:52,344: Singularity is installed, version 2.6.1-dist 2019-08-17 00:39:52,344: Testing the function of Singularity... 2019-08-17 00:39:52,344: Checking singularity with cmd:singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 hostname 2019-08-17 00:40:14,920: Singularity Works... 2019-08-17 00:40:14,920: copy /home/m/BOINC/slots/1/shared/ATLAS.root_0 2019-08-17 00:40:15,280: copy /home/m/BOINC/slots/1/shared/start_atlas.sh 2019-08-17 00:40:15,280: copy /home/m/BOINC/slots/1/shared/RTE.tar.gz 2019-08-17 00:40:15,280: copy /home/m/BOINC/slots/1/shared/input.tar.gz 2019-08-17 00:40:15,316: start atlas job with PandaID=4448115136 2019-08-17 00:40:15,317: cmd = singularity exec --pwd /home/m/BOINC/slots/1 -B /cvmfs,/home /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sh start_atlas.sh > runtime_log 2> runtime_log.err 2019-08-18 19:15:18,536: running cmd return value is 0 2019-08-18 19:15:18,572: Moving ./HITS.18722326._011376.pool.root.1 to shared/HITS.pool.root.1 2019-08-18 19:15:18,573: *****************The last 100 lines of the pilot log****************** 2019-08-18 19:15:18,577: 2019-08-18 18:14:27,845 | DEBUG | queue_monitor | pilot.control.job | send_state | wrote heartbeat to file /home/m/BOINC/slots/1/heartbeat.json 2019-08-18 18:14:27,846 | INFO | queue_monitor | pilot.control.job | queue_monitor | job 4448115136 was dequeued from the monitored payloads queue 2019-08-18 18:14:28,894 | INFO | retrieve | pilot.util.auxiliary | make_job_report | 2019-08-18 18:14:28,894 | INFO | retrieve | pilot.util.auxiliary | make_job_report | job summary report 2019-08-18 18:14:28,894 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-08-18 18:14:28,895 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4448115136 2019-08-18 18:14:28,895 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18722326 2019-08-18 18:14:28,895 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none) 2019-08-18 18:14:28,895 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE 2019-08-18 18:14:28,895 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished 2019-08-18 18:14:28,895 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0 2019-08-18 18:14:28,895 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0 2019-08-18 18:14:28,895 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag: 2019-08-18 18:14:28,895 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0 2019-08-18 18:14:28,895 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK 2019-08-18 18:14:28,895 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 150370 s 2019-08-18 18:14:28,895 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 200 2019-08-18 18:14:28,896 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0 2019-08-18 18:14:28,896 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 10328 2019-08-18 18:14:28,896 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: 10328 2019-08-18 18:14:28,896 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 1 2019-08-18 18:14:28,896 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False 2019-08-18 18:14:28,896 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-08-18 18:14:28,896 | INFO | retrieve | pilot.util.auxiliary | make_job_report | 2019-08-18 18:14:28,896 | INFO | retrieve | pilot.control.job | has_job_completed | job 4448115136 has completed 2019-08-18 18:14:28,896 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called 2019-08-18 18:14:28,898 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /home/m/BOINC/slots/1/PanDA_Pilot-4448115136 2019-08-18 18:14:29,902 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [10328] 2019-08-18 18:14:29,902 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 10328 2019-08-18 18:14:29,902 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes 2019-08-18 18:14:30,905 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes 2019-08-18 18:14:30,905 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=10328 2019-08-18 18:14:30,963 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [10328] (in reverse order) 2019-08-18 18:14:31,004 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s) 2019-08-18 18:14:31,005 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs 2019-08-18 18:14:31,005 | INFO | retrieve | pilot.control.job | retrieve | ready for new job 2019-08-18 18:14:31,005 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging No handlers could be found for logger "pilot.util.mpi" 2019-08-18 18:14:31,514 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1 2019-08-18 18:14:41,564 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1 2019-08-18 18:14:41,565 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /home/m/BOINC/slots/1 2019-08-18 18:14:41,586 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (440147116032 B) 2019-08-18 18:14:41,587 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job 2019-08-18 18:14:41,587 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished 2019-08-18 18:14:41,597 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration 2019-08-18 18:14:41,611 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended 2019-08-18 18:14:41,639 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set 2019-08-18 18:14:41,639 | DEBUG | data | pilot.control.data | control | [data] control thread has finished 2019-08-18 18:14:41,648 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished 2019-08-18 18:14:41,695 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished 2019-08-18 18:14:41,756 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished 2019-08-18 18:14:41,776 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 11 threads 2019-08-18 18:14:41,776 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140562901796608)>, <ExcThread(job, started 140562685523712)>, <ExcThread(copytool_out, started 140562569082624)>, <ExcThread(execute_payloads, started 140561528911616)>, <ExcThread(create_data_payload, started 140562594260736)>, <ExcThread(queue_monitoring, started 140562040604416)>, <ExcThread(validate, started 140562602653440)>, <ExcThread(job_monitor, started 140562065782528)>, <ExcThread(payload, started 140562560689920)>, <ExcThread(validate_pre, started 140562552297216)>, <ExcThread(queue_monitor, started 140562048997120)>] 2019-08-18 18:14:41,994 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration 2019-08-18 18:14:42,232 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished 2019-08-18 18:14:42,328 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished 2019-08-18 18:14:42,380 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 9 threads 2019-08-18 18:14:42,381 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140562901796608)>, <ExcThread(job, started 140562685523712)>, <ExcThread(copytool_out, started 140562569082624)>, <ExcThread(create_data_payload, started 140562594260736)>, <ExcThread(queue_monitoring, started 140562040604416)>, <ExcThread(job_monitor, started 140562065782528)>, <ExcThread(payload, started 140562560689920)>, <ExcThread(validate_pre, started 140562552297216)>, <ExcThread(queue_monitor, started 140562048997120)>] 2019-08-18 18:14:42,464 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished 2019-08-18 18:14:42,598 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished 2019-08-18 18:14:42,623 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set 2019-08-18 18:14:42,623 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set 2019-08-18 18:14:42,623 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished 2019-08-18 18:14:42,623 | DEBUG | job | pilot.control.job | control | [job] control thread has finished 2019-08-18 18:14:42,645 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 5 threads 2019-08-18 18:14:42,646 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140562901796608)>, <ExcThread(create_data_payload, started 140562594260736)>, <ExcThread(queue_monitoring, started 140562040604416)>, <ExcThread(job_monitor, started 140562065782528)>, <ExcThread(queue_monitor, started 140562048997120)>] 2019-08-18 18:14:42,860 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished 2019-08-18 18:14:42,948 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 4 threads 2019-08-18 18:14:42,948 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140562901796608)>, <ExcThread(queue_monitoring, started 140562040604416)>, <ExcThread(job_monitor, started 140562065782528)>, <ExcThread(queue_monitor, started 140562048997120)>] 2019-08-18 18:14:43,401 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration 2019-08-18 18:14:43,401 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished 2019-08-18 18:14:43,451 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 3 threads 2019-08-18 18:14:43,452 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140562901796608)>, <ExcThread(queue_monitoring, started 140562040604416)>, <ExcThread(job_monitor, started 140562065782528)>] 2019-08-18 18:14:44,995 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished 2019-08-18 18:14:45,062 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 2 threads 2019-08-18 18:14:45,062 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140562901796608)>, <ExcThread(job_monitor, started 140562065782528)>] 2019-08-18 18:15:18,053 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 62 s) 2019-08-18 18:15:18,053 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished 2019-08-18 18:15:18,152 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0) 2019-08-18 18:15:18,152 | INFO | MainThread | root | wrap_up | traces error code: 0 2019-08-18 18:15:18,152 | INFO | MainThread | root | wrap_up | pilot has finished 2019-08-18 18:15:18 UTC [wrapper] ==== pilot stdout END ==== 2019-08-18 18:15:18 UTC [wrapper] ==== wrapper stdout RESUME ==== 2019-08-18 18:15:18 UTC [wrapper] Pilot exit status: 0 2019-08-18 18:15:18 UTC [wrapper] STATUSCODE: 0 2019-08-18 18:15:18 UTC [wrapper] apfmon messages muted ---- find pandaID.out ---- total 48 -rw------- 1 m m 11357 Jul 25 15:38 LICENSE drwx------ 14 m m 4096 Aug 17 00:43 pilot -rwx------ 1 m m 20463 Jul 25 15:38 pilot.py -rw------- 1 m m 8 Aug 7 12:02 PILOTVERSION -rw------- 1 m m 2251 Jul 25 15:38 README.md -rw------- 1 m m 221 Jul 25 15:38 TODO.md 2019-08-18 18:15:18 UTC [wrapper] Test setup, not cleaning 2019-08-18 18:15:18 UTC [wrapper] ==== wrapper stdout END ==== 2019-08-18 18:15:18 UTC [wrapper] ==== wrapper stderr END ==== 2019-08-18 18:15:18 UTC [wrapper] wrapper wrapperexiting ec=0, duration=153296 2019-08-18 18:15:18 UTC [wrapper] apfmon messages muted 2019-08-18 19:15:18,580: ***************diag file************ 2019-08-18 19:15:18,580: runtimeenvironments=APPS/HEP/ATLAS-SITE; Processors=1 WallTime=153295.76s KernelTime=1785.89s UserTime=150044.17s CPUUsage=99% MaxResidentMemory=1953724kB AverageResidentMemory=0kB AverageTotalMemory=0kB AverageUnsharedMemory=0kB AverageUnsharedStack=0kB AverageSharedMemory=0kB PageSize=4096B MajorPageFaults=2414984 MinorPageFaults=77031833 Swaps=0 ForcedSwitches=40311438 WaitSwitches=75383078 Inputs=573908952 Outputs=651368 SocketReceived=0 SocketSent=0 Signals=0 nodename=m@TeeC16 exitcode=0 2019-08-18 19:15:18,584: ******************************WorkDir*********************** 2019-08-18 19:15:18,584: total 292260 drwxrwx--x 6 m m 4096 Aug 18 19:15 . drwxrwx--x 6 m m 4096 Aug 17 00:56 .. -rw------- 1 m m 7411700 Aug 17 00:44 agis_ddmendpoints.json -rw------- 1 m m 4399526 Aug 17 00:44 agis_schedconf.cvmfs.json drwx------ 2 m m 4096 Aug 17 00:40 .alrb drwxr-xr-x 3 m m 4096 Aug 17 00:40 APPS -rw------- 1 m m 541 Aug 17 00:41 .asetup -rw------- 1 m m 826 Aug 17 00:45 .asetup.save -rw-rw-r-- 1 m m 0 Aug 17 00:37 boinc_lockfile -rw-rw-r-- 1 m m 8192 Aug 18 19:15 boinc_mmap_file -rw-rw-r-- 1 m m 539 Aug 18 19:12 boinc_task_state.xml -rw-rw-r-- 1 m m 279544032 Aug 17 00:40 EVNT.18605758._000385.pool.root.1 -rw------- 1 m m 82934 Aug 18 19:14 heartbeat.json -rw-rw-r-- 1 m m 5679 Aug 17 20:45 init_data.xml -rw-rw-r-- 1 m m 261612 Aug 17 00:40 input.tar.gz -rw------- 1 m m 499 Aug 18 19:15 jcGKDmj5pIvnShfckohDCDFpABFKDmABFKDm55VKDmABFKDmCrj46n.diag -rw-rw-r-- 1 m m 112 Aug 17 00:37 job.xml -rw------- 1 m m 6529226 Aug 18 19:15 log.18722326._011376.job.log.1 -rw------- 1 m m 586528 Aug 18 19:14 log.18722326._011376.job.log.tgz.1 -rw------- 1 m m 391 Aug 18 19:15 output.list -rw------- 1 m m 2914 Aug 16 13:00 pandaJobData.out drwx------ 3 m m 4096 Aug 7 12:02 pilot2 -rw-r--r-- 1 m m 253018 Aug 16 12:26 pilot2.tar.gz -rw------- 1 m m 8661 Aug 18 19:15 pilotlog.txt -rw-r--r-- 1 m m 4468 Aug 16 13:00 queuedata.json -rw-rw-r-- 1 m m 815 Aug 17 00:40 RTE.tar.gz -rwxr-xr-x 1 m m 8466 Aug 17 00:37 run_atlas -rwx------ 1 m m 12641 Aug 16 13:00 runpilot2-wrapper.sh -rw-rw-r-- 1 m m 692 Aug 18 19:15 runtime_log -rw-rw-r-- 1 m m 7801 Aug 18 19:15 runtime_log.err -rw------- 1 m m 248 Aug 17 00:40 setup.sh.local drwxrwx--x 2 m m 4096 Aug 18 19:15 shared -rw-rw-r-- 1 m m 8659 Aug 17 00:40 start_atlas.sh -rw-rw-r-- 1 m m 17656 Aug 18 19:15 stderr.txt -rw-rw-r-- 1 m m 107 Aug 17 00:37 wrapper_26015_x86_64-pc-linux-gnu -rw-rw-r-- 1 m m 30 Aug 18 19:15 wrapper_checkpoint.txt 2019-08-18 19:15:18,585: running start_atlas return value is 0 2019-08-18 19:15:18,585: Parent exit 0 2019-08-18 19:15:18,585: child process exit 0 19:15:18 (3324): run_atlas exited; CPU time 150044.438416 19:15:18 (3324): called boinc_finish(0) </stderr_txt> ]]>
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