Name | SmiLDmyMuIvnShfckohDCDFpABFKDmABFKDmMFdKDmABFKDmcSWcen_0 |
Workunit | 1918191 |
Created | 16 Aug 2019, 16:35:06 UTC |
Sent | 16 Aug 2019, 18:20:14 UTC |
Report deadline | 23 Aug 2019, 18:20:14 UTC |
Received | 17 Aug 2019, 7:00:54 UTC |
Server state | Over |
Outcome | Success |
Client state | Done |
Exit status | 0 (0x00000000) |
Computer ID | 3911 |
Run time | 2 hours 3 min 56 sec |
CPU time | 7 hours 31 min 11 sec |
Validate state | Valid |
Credit | 219.64 |
Device peak FLOPS | 12.76 GFLOPS |
Application version | ATLAS Simulation v0.72 (native_mt) x86_64-pc-linux-gnu |
Peak working set size | 1.79 GB |
Peak swap size | 3.72 GB |
Peak disk usage | 837.19 MB |
<core_client_version>7.7.0</core_client_version> <![CDATA[ <stderr_txt> 05:56:38 (25289): wrapper (7.7.26015): starting 05:56:38 (25289): wrapper: running run_atlas (--nthreads 4) 2019-08-17 05:56:38,489: singularity image is /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 2019-08-17 05:56:38,489: sys.argv = ['run_atlas', '--nthreads', '4'] 2019-08-17 05:56:38,490: THREADS=4 2019-08-17 05:56:38,491: Checking for CVMFS 2019-08-17 05:56:39,772: CVMFS is installed 2019-08-17 05:56:39,776: OS:CentOS Linux release 7.6.1810 (Core) 2019-08-17 05:56:39,776: This is not SLC6, need to run with Singularity.... 2019-08-17 05:56:39,776: Checking Singularity... 2019-08-17 05:56:39,779: Singularity is not installed, using version from CVMFS 2019-08-17 05:56:39,779: Testing the function of Singularity... 2019-08-17 05:56:39,779: Checking singularity with cmd:/cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 hostname 2019-08-17 05:56:39,990: Singularity Works... 2019-08-17 05:56:39,990: copy /home/grid/slots/0/shared/ATLAS.root_0 2019-08-17 05:56:40,750: copy /home/grid/slots/0/shared/input.tar.gz 2019-08-17 05:56:40,750: copy /home/grid/slots/0/shared/RTE.tar.gz 2019-08-17 05:56:40,751: copy /home/grid/slots/0/shared/start_atlas.sh 2019-08-17 05:56:40,751: export ATHENA_PROC_NUMBER=4; 2019-08-17 05:56:40,776: start atlas job with PandaID=4451505570 2019-08-17 05:56:40,776: cmd = /cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec --pwd /home/grid/slots/0 -B /cvmfs,/home /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sh start_atlas.sh > runtime_log 2> runtime_log.err 2019-08-17 08:00:33,142: running cmd return value is 0 2019-08-17 08:00:33,146: Moving ./HITS.18604991._052075.pool.root.1 to shared/HITS.pool.root.1 2019-08-17 08:00:33,146: *****************The last 100 lines of the pilot log****************** 2019-08-17 08:00:33,153: 2019-08-17 05:59:23,740 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none) 2019-08-17 05:59:23,740 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE 2019-08-17 05:59:23,741 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished 2019-08-17 05:59:23,741 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0 2019-08-17 05:59:23,741 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0 2019-08-17 05:59:23,741 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag: 2019-08-17 05:59:23,741 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0 2019-08-17 05:59:23,741 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK 2019-08-17 05:59:23,741 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 27177 s 2019-08-17 05:59:23,741 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 200 2019-08-17 05:59:23,741 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0 2019-08-17 05:59:23,741 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 31952 2019-08-17 05:59:23,741 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: 31952 2019-08-17 05:59:23,741 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 4 2019-08-17 05:59:23,742 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False 2019-08-17 05:59:23,742 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-08-17 05:59:23,742 | INFO | retrieve | pilot.util.auxiliary | make_job_report | 2019-08-17 05:59:23,742 | INFO | retrieve | pilot.control.job | has_job_completed | job 4451505570 has completed 2019-08-17 05:59:23,742 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called 2019-08-17 05:59:23,750 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /home/grid/slots/0/PanDA_Pilot-4451505570 2019-08-17 05:59:24,755 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [31952] 2019-08-17 05:59:24,756 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 31952 2019-08-17 05:59:24,756 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes 2019-08-17 05:59:25,758 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes 2019-08-17 05:59:25,759 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=31952 2019-08-17 05:59:25,814 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [31952] (in reverse order) 2019-08-17 05:59:25,857 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s) 2019-08-17 05:59:25,857 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs 2019-08-17 05:59:25,857 | INFO | retrieve | pilot.control.job | retrieve | ready for new job 2019-08-17 05:59:25,858 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging No handlers could be found for logger "pilot.util.mpi" 2019-08-17 05:59:26,366 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1 2019-08-17 05:59:31,063 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 62 s) 2019-08-17 05:59:36,376 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1 2019-08-17 05:59:36,376 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /home/grid/slots/0 2019-08-17 05:59:36,425 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (35079061504 B) 2019-08-17 05:59:36,425 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job 2019-08-17 05:59:36,425 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished 2019-08-17 05:59:36,435 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration 2019-08-17 05:59:36,461 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished 2019-08-17 05:59:36,696 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished 2019-08-17 05:59:36,710 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended 2019-08-17 05:59:36,741 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 13 threads 2019-08-17 05:59:36,742 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140021877270272)>, <ExcThread(job, started 140021660997376)>, <ExcThread(validate, started 140021652604672)>, <ExcThread(validate_post, started 140021000550144)>, <ExcThread(copytool_out, started 140021554206464)>, <ExcThread(queue_monitor, started 140021008942848)>, <ExcThread(payload, started 140021545813760)>, <ExcThread(job_monitor, started 140021034120960)>, <ExcThread(execute_payloads, started 140020983764736)>, <ExcThread(data, started 140021570991872)>, <ExcThread(queue_monitoring, started 140021529028352)>, <ExcThread(validate_pre, started 140021017335552)>, <ExcThread(create_data_payload, started 140021562599168)>] 2019-08-17 05:59:37,044 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set 2019-08-17 05:59:37,045 | DEBUG | data | pilot.control.data | control | [data] control thread has finished 2019-08-17 05:59:37,143 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 12 threads 2019-08-17 05:59:37,144 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140021877270272)>, <ExcThread(job, started 140021660997376)>, <ExcThread(validate, started 140021652604672)>, <ExcThread(validate_post, started 140021000550144)>, <ExcThread(copytool_out, started 140021554206464)>, <ExcThread(queue_monitor, started 140021008942848)>, <ExcThread(payload, started 140021545813760)>, <ExcThread(job_monitor, started 140021034120960)>, <ExcThread(execute_payloads, started 140020983764736)>, <ExcThread(queue_monitoring, started 140021529028352)>, <ExcThread(validate_pre, started 140021017335552)>, <ExcThread(create_data_payload, started 140021562599168)>] 2019-08-17 05:59:37,210 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set 2019-08-17 05:59:37,210 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished 2019-08-17 05:59:37,290 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished 2019-08-17 05:59:37,345 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 10 threads 2019-08-17 05:59:37,345 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140021877270272)>, <ExcThread(job, started 140021660997376)>, <ExcThread(validate_post, started 140021000550144)>, <ExcThread(copytool_out, started 140021554206464)>, <ExcThread(queue_monitor, started 140021008942848)>, <ExcThread(job_monitor, started 140021034120960)>, <ExcThread(execute_payloads, started 140020983764736)>, <ExcThread(queue_monitoring, started 140021529028352)>, <ExcThread(validate_pre, started 140021017335552)>, <ExcThread(create_data_payload, started 140021562599168)>] 2019-08-17 05:59:37,436 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished 2019-08-17 05:59:37,546 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 9 threads 2019-08-17 05:59:37,547 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140021877270272)>, <ExcThread(job, started 140021660997376)>, <ExcThread(validate_post, started 140021000550144)>, <ExcThread(queue_monitor, started 140021008942848)>, <ExcThread(job_monitor, started 140021034120960)>, <ExcThread(execute_payloads, started 140020983764736)>, <ExcThread(queue_monitoring, started 140021529028352)>, <ExcThread(validate_pre, started 140021017335552)>, <ExcThread(create_data_payload, started 140021562599168)>] 2019-08-17 05:59:37,561 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set 2019-08-17 05:59:37,561 | DEBUG | job | pilot.control.job | control | [job] control thread has finished 2019-08-17 05:59:37,596 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished 2019-08-17 05:59:37,647 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 7 threads 2019-08-17 05:59:37,648 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140021877270272)>, <ExcThread(validate_post, started 140021000550144)>, <ExcThread(queue_monitor, started 140021008942848)>, <ExcThread(job_monitor, started 140021034120960)>, <ExcThread(execute_payloads, started 140020983764736)>, <ExcThread(queue_monitoring, started 140021529028352)>, <ExcThread(validate_pre, started 140021017335552)>] 2019-08-17 05:59:37,648 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished 2019-08-17 05:59:37,696 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished 2019-08-17 05:59:37,748 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 5 threads 2019-08-17 05:59:37,749 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140021877270272)>, <ExcThread(queue_monitor, started 140021008942848)>, <ExcThread(job_monitor, started 140021034120960)>, <ExcThread(execute_payloads, started 140020983764736)>, <ExcThread(queue_monitoring, started 140021529028352)>] 2019-08-17 05:59:37,922 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished 2019-08-17 05:59:37,950 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 4 threads 2019-08-17 05:59:37,950 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140021877270272)>, <ExcThread(queue_monitor, started 140021008942848)>, <ExcThread(job_monitor, started 140021034120960)>, <ExcThread(queue_monitoring, started 140021529028352)>] 2019-08-17 05:59:38,241 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration 2019-08-17 05:59:38,241 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished 2019-08-17 05:59:38,253 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 3 threads 2019-08-17 05:59:38,253 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140021877270272)>, <ExcThread(job_monitor, started 140021034120960)>, <ExcThread(queue_monitoring, started 140021529028352)>] 2019-08-17 05:59:38,261 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration 2019-08-17 05:59:41,262 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished 2019-08-17 05:59:41,273 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 2 threads 2019-08-17 05:59:41,273 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140021877270272)>, <ExcThread(job_monitor, started 140021034120960)>] 2019-08-17 06:00:32,665 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 123 s) 2019-08-17 06:00:32,666 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished 2019-08-17 06:00:32,739 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0) 2019-08-17 06:00:32,740 | INFO | MainThread | root | wrap_up | traces error code: 0 2019-08-17 06:00:32,740 | INFO | MainThread | root | wrap_up | pilot has finished 2019-08-17 06:00:32 UTC [wrapper] ==== pilot stdout END ==== 2019-08-17 06:00:32 UTC [wrapper] ==== wrapper stdout RESUME ==== 2019-08-17 06:00:32 UTC [wrapper] Pilot exit status: 0 2019-08-17 06:00:32 UTC [wrapper] STATUSCODE: 0 2019-08-17 06:00:32 UTC [wrapper] apfmon messages muted ---- find pandaID.out ---- total 44 -rw-------. 1 grid grid 11357 Jul 25 16:38 LICENSE drwx------. 14 grid grid 216 Aug 17 05:56 pilot -rwx------. 1 grid grid 20463 Jul 25 16:38 pilot.py -rw-------. 1 grid grid 8 Aug 7 13:02 PILOTVERSION -rw-------. 1 grid grid 2251 Jul 25 16:38 README.md -rw-------. 1 grid grid 221 Jul 25 16:38 TODO.md 2019-08-17 06:00:33 UTC [wrapper] Test setup, not cleaning 2019-08-17 06:00:33 UTC [wrapper] ==== wrapper stdout END ==== 2019-08-17 06:00:33 UTC [wrapper] ==== wrapper stderr END ==== 2019-08-17 06:00:33 UTC [wrapper] wrapper wrapperexiting ec=0, duration=7432 2019-08-17 06:00:33 UTC [wrapper] apfmon messages muted 2019-08-17 08:00:33,158: ***************diag file************ 2019-08-17 08:00:33,158: runtimeenvironments=APPS/HEP/ATLAS-SITE; Processors=1 WallTime=7431.97s KernelTime=220.10s UserTime=27071.49s CPUUsage=367% MaxResidentMemory=1944040kB AverageResidentMemory=0kB AverageTotalMemory=0kB AverageUnsharedMemory=0kB AverageUnsharedStack=0kB AverageSharedMemory=0kB PageSize=4096B MajorPageFaults=294658 MinorPageFaults=13476521 Swaps=0 ForcedSwitches=3119270 WaitSwitches=6037778 Inputs=71724504 Outputs=500288 SocketReceived=0 SocketSent=0 Signals=0 nodename=David_Cameron@dcameron04.cern.ch exitcode=0 2019-08-17 08:00:33,169: ******************************WorkDir*********************** 2019-08-17 08:00:33,169: total 380196 drwxrwx--x. 6 grid grid 4096 Aug 17 08:00 . drwxr-x--x. 3 grid grid 15 Aug 8 09:08 .. -rw-------. 1 grid grid 7411700 Aug 17 05:56 agis_ddmendpoints.json -rw-------. 1 grid grid 4399564 Aug 17 05:56 agis_schedconf.cvmfs.json drwx------. 2 grid grid 6 Aug 17 05:56 .alrb drwxr-xr-x. 3 grid grid 17 Aug 17 05:56 APPS -rw-------. 1 grid grid 538 Aug 17 05:56 .asetup -rw-------. 1 grid grid 826 Aug 17 05:57 .asetup.save -rw-rw-r--. 1 grid grid 0 Aug 17 05:56 boinc_lockfile -rw-rw-r--. 1 grid grid 8192 Aug 17 08:00 boinc_mmap_file -rw-rw-r--. 1 grid grid 536 Aug 17 07:53 boinc_task_state.xml -rw-rw-r--. 1 grid grid 375489665 Aug 17 05:56 EVNT.17323818._001335.pool.root.1 -rw-------. 1 grid grid 68546 Aug 17 07:59 heartbeat.json -rw-rw-r--. 1 grid grid 5866 Aug 17 05:56 init_data.xml -rw-rw-r--. 1 grid grid 261616 Aug 17 05:56 input.tar.gz -rw-rw-r--. 1 grid grid 112 Aug 17 05:56 job.xml -rw-------. 1 grid grid 450521 Aug 17 08:00 log.18604991._052075.job.log.1 -rw-------. 1 grid grid 818341 Aug 17 07:59 log.18604991._052075.job.log.tgz.1 -rw-------. 1 grid grid 391 Aug 17 08:00 output.list -rw-------. 1 grid grid 2873 Aug 16 18:34 pandaJobData.out drwx------. 3 grid grid 174 Aug 7 13:02 pilot2 -rw-r--r--. 1 grid grid 253018 Aug 16 18:25 pilot2.tar.gz -rw-------. 1 grid grid 11325 Aug 17 08:00 pilotlog.txt -rw-r--r--. 1 grid grid 4468 Aug 16 18:34 queuedata.json -rw-rw-r--. 1 grid grid 815 Aug 17 05:56 RTE.tar.gz -rwxr-xr-x. 1 grid grid 8466 Aug 17 05:56 run_atlas -rwx------. 1 grid grid 12641 Aug 16 18:34 runpilot2-wrapper.sh -rw-rw-r--. 1 grid grid 692 Aug 17 08:00 runtime_log -rw-rw-r--. 1 grid grid 6807 Aug 17 08:00 runtime_log.err drwxrwx--x. 2 grid grid 131 Aug 17 08:00 shared -rw-------. 1 grid grid 516 Aug 17 08:00 SmiLDmyMuIvnShfckohDCDFpABFKDmABFKDmMFdKDmABFKDmcSWcen.diag -rw-rw-r--. 1 grid grid 8688 Aug 17 05:56 start_atlas.sh -rw-rw-r--. 1 grid grid 19469 Aug 17 08:00 stderr.txt -rw-rw-r--. 1 grid grid 107 Aug 17 05:56 wrapper_26015_x86_64-pc-linux-gnu -rw-rw-r--. 1 grid grid 27 Aug 17 08:00 wrapper_checkpoint.txt 2019-08-17 08:00:33,169: running start_atlas return value is 0 2019-08-17 08:00:33,169: Parent exit 0 2019-08-17 08:00:33,171: child process exit 0 08:00:33 (25289): run_atlas exited; CPU time 27071.928736 08:00:33 (25289): called boinc_finish(0) </stderr_txt> ]]>
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