Name | YbjNDmeY8IvnShfckohDCDFpABFKDmABFKDmDo0KDmABFKDmCEeaen_0 |
Workunit | 1918280 |
Created | 17 Aug 2019, 7:44:06 UTC |
Sent | 18 Aug 2019, 3:42:08 UTC |
Report deadline | 25 Aug 2019, 3:42:08 UTC |
Received | 18 Aug 2019, 12:30:06 UTC |
Server state | Over |
Outcome | Success |
Client state | Done |
Exit status | 0 (0x00000000) |
Computer ID | 3911 |
Run time | 3 hours 11 min 5 sec |
CPU time | 11 hours 55 min 42 sec |
Validate state | Valid |
Credit | 338.62 |
Device peak FLOPS | 12.76 GFLOPS |
Application version | ATLAS Simulation v0.72 (native_mt) x86_64-pc-linux-gnu |
Peak working set size | 1.80 GB |
Peak swap size | 3.72 GB |
Peak disk usage | 849.99 MB |
<core_client_version>7.7.0</core_client_version> <![CDATA[ <stderr_txt> 10:18:41 (10220): wrapper (7.7.26015): starting 10:18:41 (10220): wrapper: running run_atlas (--nthreads 4) 2019-08-18 10:18:41,367: singularity image is /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 2019-08-18 10:18:41,367: sys.argv = ['run_atlas', '--nthreads', '4'] 2019-08-18 10:18:41,368: THREADS=4 2019-08-18 10:18:41,369: Checking for CVMFS 2019-08-18 10:18:42,778: CVMFS is installed 2019-08-18 10:18:42,782: OS:CentOS Linux release 7.6.1810 (Core) 2019-08-18 10:18:42,782: This is not SLC6, need to run with Singularity.... 2019-08-18 10:18:42,782: Checking Singularity... 2019-08-18 10:18:42,785: Singularity is not installed, using version from CVMFS 2019-08-18 10:18:42,785: Testing the function of Singularity... 2019-08-18 10:18:42,785: Checking singularity with cmd:/cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 hostname 2019-08-18 10:18:43,001: Singularity Works... 2019-08-18 10:18:43,001: copy /home/grid/slots/0/shared/ATLAS.root_0 2019-08-18 10:18:43,452: copy /home/grid/slots/0/shared/input.tar.gz 2019-08-18 10:18:43,452: copy /home/grid/slots/0/shared/RTE.tar.gz 2019-08-18 10:18:43,453: copy /home/grid/slots/0/shared/start_atlas.sh 2019-08-18 10:18:43,453: export ATHENA_PROC_NUMBER=4; 2019-08-18 10:18:43,473: start atlas job with PandaID=4449500478 2019-08-18 10:18:43,473: cmd = /cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec --pwd /home/grid/slots/0 -B /cvmfs,/home /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sh start_atlas.sh > runtime_log 2> runtime_log.err 2019-08-18 13:29:43,110: running cmd return value is 0 2019-08-18 13:29:43,113: Moving ./HITS.18722222._015565.pool.root.1 to shared/HITS.pool.root.1 2019-08-18 13:29:43,113: *****************The last 100 lines of the pilot log****************** 2019-08-18 13:29:43,122: 2019-08-18 11:29:04,504 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18722222 2019-08-18 11:29:04,504 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none) 2019-08-18 11:29:04,504 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE 2019-08-18 11:29:04,505 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished 2019-08-18 11:29:04,505 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0 2019-08-18 11:29:04,505 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0 2019-08-18 11:29:04,505 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag: 2019-08-18 11:29:04,505 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0 2019-08-18 11:29:04,505 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK 2019-08-18 11:29:04,505 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 43110 s 2019-08-18 11:29:04,505 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 200 2019-08-18 11:29:04,505 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0 2019-08-18 11:29:04,505 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 16910 2019-08-18 11:29:04,505 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: 16910 2019-08-18 11:29:04,505 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 4 2019-08-18 11:29:04,505 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False 2019-08-18 11:29:04,505 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-08-18 11:29:04,505 | INFO | retrieve | pilot.util.auxiliary | make_job_report | 2019-08-18 11:29:04,505 | INFO | retrieve | pilot.control.job | has_job_completed | job 4449500478 has completed 2019-08-18 11:29:04,506 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called 2019-08-18 11:29:04,513 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /home/grid/slots/0/PanDA_Pilot-4449500478 2019-08-18 11:29:05,516 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [16910] 2019-08-18 11:29:05,516 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 16910 2019-08-18 11:29:05,516 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes 2019-08-18 11:29:06,521 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes 2019-08-18 11:29:06,521 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=16910 2019-08-18 11:29:06,571 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [16910] (in reverse order) 2019-08-18 11:29:06,612 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s) 2019-08-18 11:29:06,612 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs 2019-08-18 11:29:06,612 | INFO | retrieve | pilot.control.job | retrieve | ready for new job 2019-08-18 11:29:06,612 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging No handlers could be found for logger "pilot.util.mpi" 2019-08-18 11:29:07,122 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1 2019-08-18 11:29:17,165 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1 2019-08-18 11:29:17,165 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /home/grid/slots/0 2019-08-18 11:29:17,196 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (35137781760 B) 2019-08-18 11:29:17,197 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job 2019-08-18 11:29:17,197 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished 2019-08-18 11:29:17,222 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended 2019-08-18 11:29:17,236 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 15 threads 2019-08-18 11:29:17,238 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140570469754624)>, <ExcThread(job, started 140570253481728)>, <ExcThread(validate_post, started 140569691014912)>, <ExcThread(data, started 140570236696320)>, <ExcThread(job_monitor, started 140569707800320)>, <ExcThread(execute_payloads, started 140569179322112)>, <ExcThread(validate, started 140570245089024)>, <ExcThread(queue_monitor, started 140569682622208)>, <ExcThread(queue_monitoring, started 140569699407616)>, <ExcThread(create_data_payload, started 140570228303616)>, <ExcThread(failed_post, started 140569674229504)>, <ExcThread(copytool_out, started 140570203125504)>, <ExcThread(copytool_in, started 140569665836800)>, <ExcThread(validate_pre, started 140569716193024)>, <ExcThread(payload, started 140570219910912)>] 2019-08-18 11:29:17,478 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished 2019-08-18 11:29:17,639 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 14 threads 2019-08-18 11:29:17,640 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140570469754624)>, <ExcThread(job, started 140570253481728)>, <ExcThread(data, started 140570236696320)>, <ExcThread(job_monitor, started 140569707800320)>, <ExcThread(execute_payloads, started 140569179322112)>, <ExcThread(validate, started 140570245089024)>, <ExcThread(queue_monitor, started 140569682622208)>, <ExcThread(queue_monitoring, started 140569699407616)>, <ExcThread(create_data_payload, started 140570228303616)>, <ExcThread(failed_post, started 140569674229504)>, <ExcThread(copytool_out, started 140570203125504)>, <ExcThread(copytool_in, started 140569665836800)>, <ExcThread(validate_pre, started 140569716193024)>, <ExcThread(payload, started 140570219910912)>] 2019-08-18 11:29:17,714 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration 2019-08-18 11:29:17,788 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished 2019-08-18 11:29:17,806 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set 2019-08-18 11:29:17,806 | DEBUG | data | pilot.control.data | control | [data] control thread has finished 2019-08-18 11:29:17,869 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished 2019-08-18 11:29:17,941 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 11 threads 2019-08-18 11:29:17,941 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140570469754624)>, <ExcThread(job, started 140570253481728)>, <ExcThread(job_monitor, started 140569707800320)>, <ExcThread(validate, started 140570245089024)>, <ExcThread(queue_monitor, started 140569682622208)>, <ExcThread(queue_monitoring, started 140569699407616)>, <ExcThread(create_data_payload, started 140570228303616)>, <ExcThread(failed_post, started 140569674229504)>, <ExcThread(copytool_out, started 140570203125504)>, <ExcThread(validate_pre, started 140569716193024)>, <ExcThread(payload, started 140570219910912)>] 2019-08-18 11:29:18,088 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished 2019-08-18 11:29:18,119 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set 2019-08-18 11:29:18,119 | DEBUG | job | pilot.control.job | control | [job] control thread has finished 2019-08-18 11:29:18,243 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 9 threads 2019-08-18 11:29:18,243 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140570469754624)>, <ExcThread(job_monitor, started 140569707800320)>, <ExcThread(validate, started 140570245089024)>, <ExcThread(queue_monitor, started 140569682622208)>, <ExcThread(queue_monitoring, started 140569699407616)>, <ExcThread(failed_post, started 140569674229504)>, <ExcThread(copytool_out, started 140570203125504)>, <ExcThread(validate_pre, started 140569716193024)>, <ExcThread(payload, started 140570219910912)>] 2019-08-18 11:29:18,408 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration 2019-08-18 11:29:18,424 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set 2019-08-18 11:29:18,424 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished 2019-08-18 11:29:18,444 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 8 threads 2019-08-18 11:29:18,444 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140570469754624)>, <ExcThread(job_monitor, started 140569707800320)>, <ExcThread(validate, started 140570245089024)>, <ExcThread(queue_monitor, started 140569682622208)>, <ExcThread(queue_monitoring, started 140569699407616)>, <ExcThread(failed_post, started 140569674229504)>, <ExcThread(copytool_out, started 140570203125504)>, <ExcThread(validate_pre, started 140569716193024)>] 2019-08-18 11:29:18,476 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished 2019-08-18 11:29:18,478 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished 2019-08-18 11:29:18,487 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished 2019-08-18 11:29:18,545 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 5 threads 2019-08-18 11:29:18,545 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140570469754624)>, <ExcThread(job_monitor, started 140569707800320)>, <ExcThread(queue_monitor, started 140569682622208)>, <ExcThread(queue_monitoring, started 140569699407616)>, <ExcThread(copytool_out, started 140570203125504)>] 2019-08-18 11:29:18,714 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished 2019-08-18 11:29:18,747 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 4 threads 2019-08-18 11:29:18,747 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140570469754624)>, <ExcThread(job_monitor, started 140569707800320)>, <ExcThread(queue_monitor, started 140569682622208)>, <ExcThread(queue_monitoring, started 140569699407616)>] 2019-08-18 11:29:19,004 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration 2019-08-18 11:29:19,004 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished 2019-08-18 11:29:19,049 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 3 threads 2019-08-18 11:29:19,049 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140570469754624)>, <ExcThread(job_monitor, started 140569707800320)>, <ExcThread(queue_monitoring, started 140569699407616)>] 2019-08-18 11:29:21,409 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished 2019-08-18 11:29:21,466 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 2 threads 2019-08-18 11:29:21,466 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140570469754624)>, <ExcThread(job_monitor, started 140569707800320)>] 2019-08-18 11:29:42,636 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 61 s) 2019-08-18 11:29:42,636 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished 2019-08-18 11:29:42,712 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0) 2019-08-18 11:29:42,712 | INFO | MainThread | root | wrap_up | traces error code: 0 2019-08-18 11:29:42,712 | INFO | MainThread | root | wrap_up | pilot has finished 2019-08-18 11:29:42 UTC [wrapper] ==== pilot stdout END ==== 2019-08-18 11:29:42 UTC [wrapper] ==== wrapper stdout RESUME ==== 2019-08-18 11:29:42 UTC [wrapper] Pilot exit status: 0 2019-08-18 11:29:42 UTC [wrapper] STATUSCODE: 0 2019-08-18 11:29:42 UTC [wrapper] apfmon messages muted ---- find pandaID.out ---- total 44 -rw-------. 1 grid grid 11357 Jul 25 16:38 LICENSE drwx------. 14 grid grid 216 Aug 18 10:18 pilot -rwx------. 1 grid grid 20463 Jul 25 16:38 pilot.py -rw-------. 1 grid grid 8 Aug 7 13:02 PILOTVERSION -rw-------. 1 grid grid 2251 Jul 25 16:38 README.md -rw-------. 1 grid grid 221 Jul 25 16:38 TODO.md 2019-08-18 11:29:42 UTC [wrapper] Test setup, not cleaning 2019-08-18 11:29:42 UTC [wrapper] ==== wrapper stdout END ==== 2019-08-18 11:29:43 UTC [wrapper] ==== wrapper stderr END ==== 2019-08-18 11:29:43 UTC [wrapper] wrapper wrapperexiting ec=0, duration=11460 2019-08-18 11:29:43 UTC [wrapper] apfmon messages muted 2019-08-18 13:29:43,125: ***************diag file************ 2019-08-18 13:29:43,125: runtimeenvironments=APPS/HEP/ATLAS-SITE; Processors=1 WallTime=11459.26s KernelTime=325.06s UserTime=42942.44s CPUUsage=377% MaxResidentMemory=1945316kB AverageResidentMemory=0kB AverageTotalMemory=0kB AverageUnsharedMemory=0kB AverageUnsharedStack=0kB AverageSharedMemory=0kB PageSize=4096B MajorPageFaults=375671 MinorPageFaults=16126733 Swaps=0 ForcedSwitches=4976658 WaitSwitches=7844591 Inputs=91266528 Outputs=756080 SocketReceived=0 SocketSent=0 Signals=0 nodename=David_Cameron@dcameron04.cern.ch exitcode=0 2019-08-18 13:29:43,135: ******************************WorkDir*********************** 2019-08-18 13:29:43,135: total 267588 drwxrwx--x. 6 grid grid 4096 Aug 18 13:29 . drwxr-x--x. 3 grid grid 15 Aug 8 09:08 .. -rw-------. 1 grid grid 7440697 Aug 18 10:18 agis_ddmendpoints.json -rw-------. 1 grid grid 4400633 Aug 18 10:18 agis_schedconf.cvmfs.json drwx------. 2 grid grid 6 Aug 18 10:18 .alrb drwxr-xr-x. 3 grid grid 17 Aug 18 10:18 APPS -rw-------. 1 grid grid 538 Aug 18 10:18 .asetup -rw-------. 1 grid grid 826 Aug 18 10:19 .asetup.save -rw-rw-r--. 1 grid grid 0 Aug 18 10:18 boinc_lockfile -rw-rw-r--. 1 grid grid 8192 Aug 18 13:29 boinc_mmap_file -rw-rw-r--. 1 grid grid 537 Aug 18 13:22 boinc_task_state.xml -rw-rw-r--. 1 grid grid 259938479 Aug 18 10:18 EVNT.18605748._000367.pool.root.1 -rw-------. 1 grid grid 92767 Aug 18 13:29 heartbeat.json -rw-rw-r--. 1 grid grid 5866 Aug 18 10:18 init_data.xml -rw-rw-r--. 1 grid grid 261624 Aug 18 10:18 input.tar.gz -rw-rw-r--. 1 grid grid 112 Aug 18 10:18 job.xml -rw-------. 1 grid grid 616649 Aug 18 13:29 log.18722222._015565.job.log.1 -rw-------. 1 grid grid 839591 Aug 18 13:28 log.18722222._015565.job.log.tgz.1 -rw-------. 1 grid grid 391 Aug 18 13:29 output.list -rw-------. 1 grid grid 2922 Aug 17 09:43 pandaJobData.out drwx------. 3 grid grid 174 Aug 7 13:02 pilot2 -rw-r--r--. 1 grid grid 253018 Aug 17 09:39 pilot2.tar.gz -rw-------. 1 grid grid 11400 Aug 18 13:29 pilotlog.txt -rw-r--r--. 1 grid grid 4468 Aug 17 09:43 queuedata.json -rw-rw-r--. 1 grid grid 815 Aug 18 10:18 RTE.tar.gz -rwxr-xr-x. 1 grid grid 8466 Aug 18 10:18 run_atlas -rwx------. 1 grid grid 12641 Aug 17 09:43 runpilot2-wrapper.sh -rw-rw-r--. 1 grid grid 692 Aug 18 13:29 runtime_log -rw-rw-r--. 1 grid grid 6807 Aug 18 13:29 runtime_log.err drwxrwx--x. 2 grid grid 131 Aug 18 13:29 shared -rw-rw-r--. 1 grid grid 8688 Aug 18 10:18 start_atlas.sh -rw-rw-r--. 1 grid grid 19686 Aug 18 13:29 stderr.txt -rw-rw-r--. 1 grid grid 107 Aug 18 10:18 wrapper_26015_x86_64-pc-linux-gnu -rw-rw-r--. 1 grid grid 28 Aug 18 13:29 wrapper_checkpoint.txt -rw-------. 1 grid grid 517 Aug 18 13:29 YbjNDmeY8IvnShfckohDCDFpABFKDmABFKDmDo0KDmABFKDmCEeaen.diag 2019-08-18 13:29:43,135: running start_atlas return value is 0 2019-08-18 13:29:43,136: Parent exit 0 2019-08-18 13:29:43,137: child process exit 0 13:29:43 (10220): run_atlas exited; CPU time 42942.847399 13:29:43 (10220): called boinc_finish(0) </stderr_txt> ]]>
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