Name | tJPODmqECJvnShfckohDCDFpABFKDmABFKDmpf6KDmABFKDmtBqfln_2 |
Workunit | 1918349 |
Created | 17 Aug 2019, 16:04:47 UTC |
Sent | 17 Aug 2019, 17:10:56 UTC |
Report deadline | 24 Aug 2019, 17:10:56 UTC |
Received | 18 Aug 2019, 5:59:08 UTC |
Server state | Over |
Outcome | Success |
Client state | Done |
Exit status | 0 (0x00000000) |
Computer ID | 3911 |
Run time | 2 hours 17 min 2 sec |
CPU time | 8 hours 18 min 27 sec |
Validate state | Valid |
Credit | 242.84 |
Device peak FLOPS | 12.76 GFLOPS |
Application version | ATLAS Simulation v0.72 (native_mt) x86_64-pc-linux-gnu |
Peak working set size | 1.80 GB |
Peak swap size | 2.55 GB |
Peak disk usage | 748.90 MB |
<core_client_version>7.7.0</core_client_version> <![CDATA[ <stderr_txt> 04:41:46 (1925): wrapper (7.7.26015): starting 04:41:46 (1925): wrapper: running run_atlas (--nthreads 4) 2019-08-18 04:41:46,336: singularity image is /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 2019-08-18 04:41:46,336: sys.argv = ['run_atlas', '--nthreads', '4'] 2019-08-18 04:41:46,337: THREADS=4 2019-08-18 04:41:46,338: Checking for CVMFS 2019-08-18 04:41:47,830: CVMFS is installed 2019-08-18 04:41:47,833: OS:CentOS Linux release 7.6.1810 (Core) 2019-08-18 04:41:47,834: This is not SLC6, need to run with Singularity.... 2019-08-18 04:41:47,834: Checking Singularity... 2019-08-18 04:41:47,836: Singularity is not installed, using version from CVMFS 2019-08-18 04:41:47,837: Testing the function of Singularity... 2019-08-18 04:41:47,837: Checking singularity with cmd:/cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 hostname 2019-08-18 04:41:48,057: Singularity Works... 2019-08-18 04:41:48,057: copy /home/grid/slots/0/shared/ATLAS.root_0 2019-08-18 04:41:48,416: copy /home/grid/slots/0/shared/input.tar.gz 2019-08-18 04:41:48,417: copy /home/grid/slots/0/shared/RTE.tar.gz 2019-08-18 04:41:48,417: copy /home/grid/slots/0/shared/start_atlas.sh 2019-08-18 04:41:48,418: export ATHENA_PROC_NUMBER=4; 2019-08-18 04:41:48,441: start atlas job with PandaID=4449868768 2019-08-18 04:41:48,441: cmd = /cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec --pwd /home/grid/slots/0 -B /cvmfs,/home /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sh start_atlas.sh > runtime_log 2> runtime_log.err 2019-08-18 06:58:47,036: running cmd return value is 0 2019-08-18 06:58:47,040: Moving ./HITS.18722183._018977.pool.root.1 to shared/HITS.pool.root.1 2019-08-18 06:58:47,040: *****************The last 100 lines of the pilot log****************** 2019-08-18 06:58:47,049: 2019-08-18 04:57:44,934 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4449868768 2019-08-18 04:57:44,934 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18722183 2019-08-18 04:57:44,934 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none) 2019-08-18 04:57:44,934 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE 2019-08-18 04:57:44,934 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished 2019-08-18 04:57:44,934 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0 2019-08-18 04:57:44,934 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0 2019-08-18 04:57:44,934 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag: 2019-08-18 04:57:44,934 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0 2019-08-18 04:57:44,935 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK 2019-08-18 04:57:44,935 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 30037 s 2019-08-18 04:57:44,935 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 200 2019-08-18 04:57:44,935 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0 2019-08-18 04:57:44,935 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 8641 2019-08-18 04:57:44,935 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: 8641 2019-08-18 04:57:44,935 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 4 2019-08-18 04:57:44,935 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False 2019-08-18 04:57:44,935 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-08-18 04:57:44,935 | INFO | retrieve | pilot.util.auxiliary | make_job_report | 2019-08-18 04:57:44,935 | INFO | retrieve | pilot.control.job | has_job_completed | job 4449868768 has completed 2019-08-18 04:57:44,935 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called 2019-08-18 04:57:44,946 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 61 s) 2019-08-18 04:57:44,946 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /home/grid/slots/0/PanDA_Pilot-4449868768 2019-08-18 04:57:45,952 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [8641] 2019-08-18 04:57:45,952 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 8641 2019-08-18 04:57:45,952 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes 2019-08-18 04:57:46,957 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes 2019-08-18 04:57:46,958 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=8641 2019-08-18 04:57:47,008 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [8641] (in reverse order) 2019-08-18 04:57:47,052 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s) 2019-08-18 04:57:47,053 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs 2019-08-18 04:57:47,053 | INFO | retrieve | pilot.control.job | retrieve | ready for new job 2019-08-18 04:57:47,053 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging No handlers could be found for logger "pilot.util.mpi" 2019-08-18 04:57:47,562 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1 2019-08-18 04:57:57,569 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1 2019-08-18 04:57:57,569 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /home/grid/slots/0 2019-08-18 04:57:57,607 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (35576086528 B) 2019-08-18 04:57:57,607 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job 2019-08-18 04:57:57,607 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished 2019-08-18 04:57:57,619 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished 2019-08-18 04:57:57,667 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished 2019-08-18 04:57:57,698 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration 2019-08-18 04:57:58,024 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set 2019-08-18 04:57:58,025 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished 2019-08-18 04:57:58,062 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished 2019-08-18 04:57:58,067 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 12 threads 2019-08-18 04:57:58,068 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140558080354048)>, <ExcThread(job, started 140557864081152)>, <ExcThread(create_data_payload, started 140557636597504)>, <ExcThread(monitor, started 140557594633984)>, <ExcThread(execute_payloads, started 140557057763072)>, <ExcThread(copytool_out, started 140557619812096)>, <ExcThread(queue_monitor, started 140557074548480)>, <ExcThread(failed_post, started 140557066155776)>, <ExcThread(data, started 140557847295744)>, <ExcThread(queue_monitoring, started 140557099726592)>, <ExcThread(validate, started 140557855688448)>, <ExcThread(job_monitor, started 140557586241280)>] 2019-08-18 04:57:58,122 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished 2019-08-18 04:57:58,200 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set 2019-08-18 04:57:58,200 | DEBUG | job | pilot.control.job | control | [job] control thread has finished 2019-08-18 04:57:58,357 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended 2019-08-18 04:57:58,365 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 9 threads 2019-08-18 04:57:58,365 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140558080354048)>, <ExcThread(create_data_payload, started 140557636597504)>, <ExcThread(copytool_out, started 140557619812096)>, <ExcThread(queue_monitor, started 140557074548480)>, <ExcThread(failed_post, started 140557066155776)>, <ExcThread(data, started 140557847295744)>, <ExcThread(queue_monitoring, started 140557099726592)>, <ExcThread(validate, started 140557855688448)>, <ExcThread(job_monitor, started 140557586241280)>] 2019-08-18 04:57:58,458 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set 2019-08-18 04:57:58,458 | DEBUG | data | pilot.control.data | control | [data] control thread has finished 2019-08-18 04:57:58,466 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 8 threads 2019-08-18 04:57:58,466 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140558080354048)>, <ExcThread(create_data_payload, started 140557636597504)>, <ExcThread(copytool_out, started 140557619812096)>, <ExcThread(queue_monitor, started 140557074548480)>, <ExcThread(failed_post, started 140557066155776)>, <ExcThread(queue_monitoring, started 140557099726592)>, <ExcThread(validate, started 140557855688448)>, <ExcThread(job_monitor, started 140557586241280)>] 2019-08-18 04:57:58,698 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished 2019-08-18 04:57:58,738 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished 2019-08-18 04:57:58,769 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 6 threads 2019-08-18 04:57:58,769 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140558080354048)>, <ExcThread(queue_monitor, started 140557074548480)>, <ExcThread(failed_post, started 140557066155776)>, <ExcThread(queue_monitoring, started 140557099726592)>, <ExcThread(validate, started 140557855688448)>, <ExcThread(job_monitor, started 140557586241280)>] 2019-08-18 04:57:58,930 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished 2019-08-18 04:57:58,970 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 5 threads 2019-08-18 04:57:58,971 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140558080354048)>, <ExcThread(queue_monitor, started 140557074548480)>, <ExcThread(queue_monitoring, started 140557099726592)>, <ExcThread(validate, started 140557855688448)>, <ExcThread(job_monitor, started 140557586241280)>] 2019-08-18 04:57:59,082 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished 2019-08-18 04:57:59,172 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 4 threads 2019-08-18 04:57:59,172 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140558080354048)>, <ExcThread(queue_monitor, started 140557074548480)>, <ExcThread(queue_monitoring, started 140557099726592)>, <ExcThread(job_monitor, started 140557586241280)>] 2019-08-18 04:57:59,403 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration 2019-08-18 04:57:59,403 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished 2019-08-18 04:57:59,410 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration 2019-08-18 04:57:59,475 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 3 threads 2019-08-18 04:57:59,475 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140558080354048)>, <ExcThread(queue_monitoring, started 140557099726592)>, <ExcThread(job_monitor, started 140557586241280)>] 2019-08-18 04:58:02,411 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished 2019-08-18 04:58:02,495 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 2 threads 2019-08-18 04:58:02,496 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140558080354048)>, <ExcThread(job_monitor, started 140557586241280)>] 2019-08-18 04:58:46,549 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 123 s) 2019-08-18 04:58:46,550 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished 2019-08-18 04:58:46,597 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0) 2019-08-18 04:58:46,598 | INFO | MainThread | root | wrap_up | traces error code: 0 2019-08-18 04:58:46,598 | INFO | MainThread | root | wrap_up | pilot has finished 2019-08-18 04:58:46 UTC [wrapper] ==== pilot stdout END ==== 2019-08-18 04:58:46 UTC [wrapper] ==== wrapper stdout RESUME ==== 2019-08-18 04:58:46 UTC [wrapper] Pilot exit status: 0 2019-08-18 04:58:46 UTC [wrapper] STATUSCODE: 0 2019-08-18 04:58:46 UTC [wrapper] apfmon messages muted ---- find pandaID.out ---- total 44 -rw-------. 1 grid grid 11357 Jul 25 16:38 LICENSE drwx------. 14 grid grid 216 Aug 18 04:42 pilot -rwx------. 1 grid grid 20463 Jul 25 16:38 pilot.py -rw-------. 1 grid grid 8 Aug 7 13:02 PILOTVERSION -rw-------. 1 grid grid 2251 Jul 25 16:38 README.md -rw-------. 1 grid grid 221 Jul 25 16:38 TODO.md 2019-08-18 04:58:46 UTC [wrapper] Test setup, not cleaning 2019-08-18 04:58:46 UTC [wrapper] ==== wrapper stdout END ==== 2019-08-18 04:58:46 UTC [wrapper] ==== wrapper stderr END ==== 2019-08-18 04:58:46 UTC [wrapper] wrapper wrapperexiting ec=0, duration=8218 2019-08-18 04:58:46 UTC [wrapper] apfmon messages muted 2019-08-18 06:58:47,053: ***************diag file************ 2019-08-18 06:58:47,053: runtimeenvironments=APPS/HEP/ATLAS-SITE; Processors=1 WallTime=8218.23s KernelTime=251.87s UserTime=29906.86s CPUUsage=366% MaxResidentMemory=1944636kB AverageResidentMemory=0kB AverageTotalMemory=0kB AverageUnsharedMemory=0kB AverageUnsharedStack=0kB AverageSharedMemory=0kB PageSize=4096B MajorPageFaults=311435 MinorPageFaults=14094574 Swaps=0 ForcedSwitches=3483411 WaitSwitches=6144229 Inputs=75561080 Outputs=608144 SocketReceived=0 SocketSent=0 Signals=0 nodename=David_Cameron@dcameron04.cern.ch exitcode=0 2019-08-18 06:58:47,064: ******************************WorkDir*********************** 2019-08-18 06:58:47,064: total 252044 drwxrwx--x. 6 grid grid 4096 Aug 18 06:58 . drwxr-x--x. 3 grid grid 15 Aug 8 09:08 .. -rw-------. 1 grid grid 7440697 Aug 18 04:42 agis_ddmendpoints.json -rw-------. 1 grid grid 4400616 Aug 18 04:42 agis_schedconf.cvmfs.json drwx------. 2 grid grid 6 Aug 18 04:41 .alrb drwxr-xr-x. 3 grid grid 17 Aug 18 04:41 APPS -rw-------. 1 grid grid 538 Aug 18 04:41 .asetup -rw-------. 1 grid grid 826 Aug 18 04:42 .asetup.save -rw-rw-r--. 1 grid grid 0 Aug 18 04:41 boinc_lockfile -rw-rw-r--. 1 grid grid 8192 Aug 18 06:58 boinc_mmap_file -rw-rw-r--. 1 grid grid 536 Aug 18 06:50 boinc_task_state.xml -rw-rw-r--. 1 grid grid 244152862 Aug 18 04:41 EVNT.18605745._000399.pool.root.1 -rw-------. 1 grid grid 87995 Aug 18 06:57 heartbeat.json -rw-rw-r--. 1 grid grid 5866 Aug 18 04:41 init_data.xml -rw-rw-r--. 1 grid grid 261618 Aug 18 04:41 input.tar.gz -rw-rw-r--. 1 grid grid 112 Aug 18 04:41 job.xml -rw-------. 1 grid grid 500467 Aug 18 06:58 log.18722183._018977.job.log.1 -rw-------. 1 grid grid 826925 Aug 18 06:57 log.18722183._018977.job.log.tgz.1 -rw-------. 1 grid grid 391 Aug 18 06:58 output.list -rw-------. 1 grid grid 2921 Aug 17 13:39 pandaJobData.out drwx------. 3 grid grid 174 Aug 7 13:02 pilot2 -rw-r--r--. 1 grid grid 253018 Aug 17 13:39 pilot2.tar.gz -rw-------. 1 grid grid 9996 Aug 18 06:58 pilotlog.txt -rw-r--r--. 1 grid grid 4468 Aug 17 13:39 queuedata.json -rw-rw-r--. 1 grid grid 815 Aug 18 04:41 RTE.tar.gz -rwxr-xr-x. 1 grid grid 8466 Aug 18 04:41 run_atlas -rwx------. 1 grid grid 12641 Aug 17 13:39 runpilot2-wrapper.sh -rw-rw-r--. 1 grid grid 692 Aug 18 06:58 runtime_log -rw-rw-r--. 1 grid grid 6807 Aug 18 06:58 runtime_log.err drwxrwx--x. 2 grid grid 131 Aug 18 06:58 shared -rw-rw-r--. 1 grid grid 8688 Aug 18 04:41 start_atlas.sh -rw-rw-r--. 1 grid grid 18600 Aug 18 06:58 stderr.txt -rw-------. 1 grid grid 516 Aug 18 06:58 tJPODmqECJvnShfckohDCDFpABFKDmABFKDmpf6KDmABFKDmtBqfln.diag -rw-rw-r--. 1 grid grid 107 Aug 18 04:41 wrapper_26015_x86_64-pc-linux-gnu -rw-rw-r--. 1 grid grid 27 Aug 18 06:58 wrapper_checkpoint.txt 2019-08-18 06:58:47,064: running start_atlas return value is 0 2019-08-18 06:58:47,064: Parent exit 0 2019-08-18 06:58:47,066: child process exit 0 06:58:47 (1925): run_atlas exited; CPU time 29907.280842 06:58:47 (1925): called boinc_finish(0) </stderr_txt> ]]>
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