Name | kC6MDmSlGJvnShfckohDCDFpABFKDmABFKDm0rDLDmABFKDm0zpIJo_0 |
Workunit | 1918414 |
Created | 17 Aug 2019, 16:30:13 UTC |
Sent | 18 Aug 2019, 14:52:12 UTC |
Report deadline | 25 Aug 2019, 14:52:12 UTC |
Received | 19 Aug 2019, 8:58:37 UTC |
Server state | Over |
Outcome | Success |
Client state | Done |
Exit status | 0 (0x00000000) |
Computer ID | 3911 |
Run time | 4 hours 9 min 20 sec |
CPU time | 15 hours 46 min 45 sec |
Validate state | Valid |
Credit | 441.83 |
Device peak FLOPS | 12.76 GFLOPS |
Application version | ATLAS Simulation v0.72 (native_mt) x86_64-pc-linux-gnu |
Peak working set size | 1.80 GB |
Peak swap size | 3.72 GB |
Peak disk usage | 920.13 MB |
<core_client_version>7.7.0</core_client_version> <![CDATA[ <stderr_txt> 05:48:52 (4312): wrapper (7.7.26015): starting 05:48:52 (4312): wrapper: running run_atlas (--nthreads 4) 2019-08-19 05:48:52,949: singularity image is /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 2019-08-19 05:48:52,950: sys.argv = ['run_atlas', '--nthreads', '4'] 2019-08-19 05:48:52,951: THREADS=4 2019-08-19 05:48:52,952: Checking for CVMFS 2019-08-19 05:48:54,415: CVMFS is installed 2019-08-19 05:48:54,419: OS:CentOS Linux release 7.6.1810 (Core) 2019-08-19 05:48:54,419: This is not SLC6, need to run with Singularity.... 2019-08-19 05:48:54,419: Checking Singularity... 2019-08-19 05:48:54,422: Singularity is not installed, using version from CVMFS 2019-08-19 05:48:54,423: Testing the function of Singularity... 2019-08-19 05:48:54,423: Checking singularity with cmd:/cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 hostname 2019-08-19 05:48:54,724: Singularity Works... 2019-08-19 05:48:54,724: copy /home/grid/slots/0/shared/ATLAS.root_0 2019-08-19 05:48:55,291: copy /home/grid/slots/0/shared/input.tar.gz 2019-08-19 05:48:55,292: copy /home/grid/slots/0/shared/RTE.tar.gz 2019-08-19 05:48:55,292: copy /home/grid/slots/0/shared/start_atlas.sh 2019-08-19 05:48:55,293: export ATHENA_PROC_NUMBER=4; 2019-08-19 05:48:55,319: start atlas job with PandaID=4450567980 2019-08-19 05:48:55,319: cmd = /cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec --pwd /home/grid/slots/0 -B /cvmfs,/home /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sh start_atlas.sh > runtime_log 2> runtime_log.err 2019-08-19 09:58:10,552: running cmd return value is 0 2019-08-19 09:58:10,556: Moving ./HITS.18722261._014824.pool.root.1 to shared/HITS.pool.root.1 2019-08-19 09:58:10,557: *****************The last 100 lines of the pilot log****************** 2019-08-19 09:58:10,570: 2019-08-19 07:57:23,414 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-08-19 07:57:23,414 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4450567980 2019-08-19 07:57:23,414 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18722261 2019-08-19 07:57:23,414 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none) 2019-08-19 07:57:23,414 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE 2019-08-19 07:57:23,414 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished 2019-08-19 07:57:23,414 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0 2019-08-19 07:57:23,414 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0 2019-08-19 07:57:23,414 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag: 2019-08-19 07:57:23,415 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0 2019-08-19 07:57:23,415 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK 2019-08-19 07:57:23,415 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 57027 s 2019-08-19 07:57:23,415 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 200 2019-08-19 07:57:23,415 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0 2019-08-19 07:57:23,415 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 10988 2019-08-19 07:57:23,415 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: 10988 2019-08-19 07:57:23,415 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 4 2019-08-19 07:57:23,415 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False 2019-08-19 07:57:23,415 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-08-19 07:57:23,415 | INFO | retrieve | pilot.util.auxiliary | make_job_report | 2019-08-19 07:57:23,415 | INFO | retrieve | pilot.control.job | has_job_completed | job 4450567980 has completed 2019-08-19 07:57:23,416 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called 2019-08-19 07:57:23,423 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /home/grid/slots/0/PanDA_Pilot-4450567980 2019-08-19 07:57:24,428 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [10988] 2019-08-19 07:57:24,429 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 10988 2019-08-19 07:57:24,429 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes 2019-08-19 07:57:25,434 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes 2019-08-19 07:57:25,434 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=10988 2019-08-19 07:57:25,490 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [10988] (in reverse order) 2019-08-19 07:57:25,532 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s) 2019-08-19 07:57:25,532 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs 2019-08-19 07:57:25,532 | INFO | retrieve | pilot.control.job | retrieve | ready for new job 2019-08-19 07:57:25,532 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging No handlers could be found for logger "pilot.util.mpi" 2019-08-19 07:57:26,044 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1 2019-08-19 07:57:36,089 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1 2019-08-19 07:57:36,090 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /home/grid/slots/0 2019-08-19 07:57:36,128 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (35840327680 B) 2019-08-19 07:57:36,128 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job 2019-08-19 07:57:36,128 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished 2019-08-19 07:57:36,163 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration 2019-08-19 07:57:36,169 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration 2019-08-19 07:57:36,252 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished 2019-08-19 07:57:36,456 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 15 threads 2019-08-19 07:57:36,456 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139784838018816)>, <ExcThread(job, started 139784621745920)>, <ExcThread(queue_monitoring, started 139784508913408)>, <ExcThread(execute_payloads, started 139783468742400)>, <ExcThread(monitor, started 139783997220608)>, <ExcThread(payload, started 139784525698816)>, <ExcThread(data, started 139784534091520)>, <ExcThread(job_monitor, started 139783972042496)>, <ExcThread(validate, started 139784542484224)>, <ExcThread(failed_post, started 139783963649792)>, <ExcThread(create_data_payload, started 139784500520704)>, <ExcThread(queue_monitor, started 139783955257088)>, <ExcThread(validate_pre, started 139784492128000)>, <ExcThread(validate_post, started 139783980435200)>, <ExcThread(copytool_out, started 139784517306112)>] 2019-08-19 07:57:36,569 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set 2019-08-19 07:57:36,569 | DEBUG | job | pilot.control.job | control | [job] control thread has finished 2019-08-19 07:57:36,691 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished 2019-08-19 07:57:36,701 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set 2019-08-19 07:57:36,702 | DEBUG | data | pilot.control.data | control | [data] control thread has finished 2019-08-19 07:57:36,753 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended 2019-08-19 07:57:36,769 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished 2019-08-19 07:57:36,774 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 10 threads 2019-08-19 07:57:36,774 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139784838018816)>, <ExcThread(queue_monitoring, started 139784508913408)>, <ExcThread(execute_payloads, started 139783468742400)>, <ExcThread(payload, started 139784525698816)>, <ExcThread(job_monitor, started 139783972042496)>, <ExcThread(validate, started 139784542484224)>, <ExcThread(create_data_payload, started 139784500520704)>, <ExcThread(queue_monitor, started 139783955257088)>, <ExcThread(validate_post, started 139783980435200)>, <ExcThread(copytool_out, started 139784517306112)>] 2019-08-19 07:57:36,796 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished 2019-08-19 07:57:36,824 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished 2019-08-19 07:57:36,881 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished 2019-08-19 07:57:36,975 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 7 threads 2019-08-19 07:57:36,975 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139784838018816)>, <ExcThread(queue_monitoring, started 139784508913408)>, <ExcThread(payload, started 139784525698816)>, <ExcThread(job_monitor, started 139783972042496)>, <ExcThread(validate, started 139784542484224)>, <ExcThread(queue_monitor, started 139783955257088)>, <ExcThread(copytool_out, started 139784517306112)>] 2019-08-19 07:57:37,077 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set 2019-08-19 07:57:37,078 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished 2019-08-19 07:57:37,080 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 6 threads 2019-08-19 07:57:37,080 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139784838018816)>, <ExcThread(queue_monitoring, started 139784508913408)>, <ExcThread(job_monitor, started 139783972042496)>, <ExcThread(validate, started 139784542484224)>, <ExcThread(queue_monitor, started 139783955257088)>, <ExcThread(copytool_out, started 139784517306112)>] 2019-08-19 07:57:37,163 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished 2019-08-19 07:57:37,181 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 5 threads 2019-08-19 07:57:37,181 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139784838018816)>, <ExcThread(queue_monitoring, started 139784508913408)>, <ExcThread(job_monitor, started 139783972042496)>, <ExcThread(validate, started 139784542484224)>, <ExcThread(queue_monitor, started 139783955257088)>] 2019-08-19 07:57:37,508 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished 2019-08-19 07:57:37,584 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 4 threads 2019-08-19 07:57:37,584 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139784838018816)>, <ExcThread(queue_monitoring, started 139784508913408)>, <ExcThread(job_monitor, started 139783972042496)>, <ExcThread(queue_monitor, started 139783955257088)>] 2019-08-19 07:57:37,905 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration 2019-08-19 07:57:37,906 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished 2019-08-19 07:57:37,987 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 3 threads 2019-08-19 07:57:37,988 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139784838018816)>, <ExcThread(queue_monitoring, started 139784508913408)>, <ExcThread(job_monitor, started 139783972042496)>] 2019-08-19 07:57:39,170 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished 2019-08-19 07:57:39,196 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 2 threads 2019-08-19 07:57:39,196 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139784838018816)>, <ExcThread(job_monitor, started 139783972042496)>] 2019-08-19 07:58:10,015 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 62 s) 2019-08-19 07:58:10,015 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished 2019-08-19 07:58:10,022 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0) 2019-08-19 07:58:10,023 | INFO | MainThread | root | wrap_up | traces error code: 0 2019-08-19 07:58:10,023 | INFO | MainThread | root | wrap_up | pilot has finished 2019-08-19 07:58:10 UTC [wrapper] ==== pilot stdout END ==== 2019-08-19 07:58:10 UTC [wrapper] ==== wrapper stdout RESUME ==== 2019-08-19 07:58:10 UTC [wrapper] Pilot exit status: 0 2019-08-19 07:58:10 UTC [wrapper] STATUSCODE: 0 2019-08-19 07:58:10 UTC [wrapper] apfmon messages muted ---- find pandaID.out ---- total 44 -rw-------. 1 grid grid 11357 Jul 25 16:38 LICENSE drwx------. 14 grid grid 216 Aug 19 05:49 pilot -rwx------. 1 grid grid 20463 Jul 25 16:38 pilot.py -rw-------. 1 grid grid 8 Aug 7 13:02 PILOTVERSION -rw-------. 1 grid grid 2251 Jul 25 16:38 README.md -rw-------. 1 grid grid 221 Jul 25 16:38 TODO.md 2019-08-19 07:58:10 UTC [wrapper] Test setup, not cleaning 2019-08-19 07:58:10 UTC [wrapper] ==== wrapper stdout END ==== 2019-08-19 07:58:10 UTC [wrapper] ==== wrapper stderr END ==== 2019-08-19 07:58:10 UTC [wrapper] wrapper wrapperexiting ec=0, duration=14955 2019-08-19 07:58:10 UTC [wrapper] apfmon messages muted 2019-08-19 09:58:10,575: ***************diag file************ 2019-08-19 09:58:10,575: runtimeenvironments=APPS/HEP/ATLAS-SITE; Processors=1 WallTime=14954.85s KernelTime=415.61s UserTime=56804.81s CPUUsage=382% MaxResidentMemory=1944588kB AverageResidentMemory=0kB AverageTotalMemory=0kB AverageUnsharedMemory=0kB AverageUnsharedStack=0kB AverageSharedMemory=0kB PageSize=4096B MajorPageFaults=442344 MinorPageFaults=18297588 Swaps=0 ForcedSwitches=6603594 WaitSwitches=9473401 Inputs=107054176 Outputs=875032 SocketReceived=0 SocketSent=0 Signals=0 nodename=David_Cameron@dcameron04.cern.ch exitcode=0 2019-08-19 09:58:10,599: ******************************WorkDir*********************** 2019-08-19 09:58:10,600: total 274668 drwxrwx--x. 6 grid grid 4096 Aug 19 09:58 . drwxr-x--x. 3 grid grid 15 Aug 8 09:08 .. -rw-------. 1 grid grid 7440670 Aug 19 05:49 agis_ddmendpoints.json -rw-------. 1 grid grid 4379057 Aug 19 05:49 agis_schedconf.cvmfs.json drwx------. 2 grid grid 6 Aug 19 05:48 .alrb drwxr-xr-x. 3 grid grid 17 Aug 19 05:48 APPS -rw-------. 1 grid grid 538 Aug 19 05:48 .asetup -rw-------. 1 grid grid 826 Aug 19 05:50 .asetup.save -rw-rw-r--. 1 grid grid 0 Aug 19 05:48 boinc_lockfile -rw-rw-r--. 1 grid grid 8192 Aug 19 09:57 boinc_mmap_file -rw-rw-r--. 1 grid grid 537 Aug 19 09:51 boinc_task_state.xml -rw-rw-r--. 1 grid grid 267037122 Aug 19 05:48 EVNT.18605752._000286.pool.root.1 -rw-------. 1 grid grid 111054 Aug 19 09:57 heartbeat.json -rw-rw-r--. 1 grid grid 5866 Aug 19 05:48 init_data.xml -rw-rw-r--. 1 grid grid 261616 Aug 19 05:48 input.tar.gz -rw-rw-r--. 1 grid grid 112 Aug 19 05:48 job.xml -rw-------. 1 grid grid 518 Aug 19 09:58 kC6MDmSlGJvnShfckohDCDFpABFKDmABFKDm0rDLDmABFKDm0zpIJo.diag -rw-------. 1 grid grid 752515 Aug 19 09:58 log.18722261._014824.job.log.1 -rw-------. 1 grid grid 854032 Aug 19 09:57 log.18722261._014824.job.log.tgz.1 -rw-------. 1 grid grid 391 Aug 19 09:58 output.list -rw-------. 1 grid grid 2922 Aug 17 18:29 pandaJobData.out drwx------. 3 grid grid 174 Aug 7 13:02 pilot2 -rw-r--r--. 1 grid grid 253018 Aug 17 18:26 pilot2.tar.gz -rw-------. 1 grid grid 10147 Aug 19 09:58 pilotlog.txt -rw-r--r--. 1 grid grid 4468 Aug 17 18:26 queuedata.json -rw-rw-r--. 1 grid grid 815 Aug 19 05:48 RTE.tar.gz -rwxr-xr-x. 1 grid grid 8466 Aug 19 05:48 run_atlas -rwx------. 1 grid grid 12641 Aug 17 18:29 runpilot2-wrapper.sh -rw-rw-r--. 1 grid grid 692 Aug 19 09:58 runtime_log -rw-rw-r--. 1 grid grid 6807 Aug 19 09:58 runtime_log.err drwxrwx--x. 2 grid grid 131 Aug 19 09:58 shared -rw-rw-r--. 1 grid grid 8688 Aug 19 05:48 start_atlas.sh -rw-rw-r--. 1 grid grid 18752 Aug 19 09:58 stderr.txt -rw-rw-r--. 1 grid grid 107 Aug 19 05:48 wrapper_26015_x86_64-pc-linux-gnu -rw-rw-r--. 1 grid grid 28 Aug 19 09:57 wrapper_checkpoint.txt 2019-08-19 09:58:10,600: running start_atlas return value is 0 2019-08-19 09:58:10,600: Parent exit 0 2019-08-19 09:58:10,602: child process exit 0 09:58:11 (4312): run_atlas exited; CPU time 56805.242198 09:58:11 (4312): called boinc_finish(0) </stderr_txt> ]]>
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