Name | kBFMDmJxTJvnShfckohDCDFpABFKDmABFKDmnrZLDmABFKDmL0ynmm_0 |
Workunit | 1918829 |
Created | 18 Aug 2019, 6:35:26 UTC |
Sent | 18 Aug 2019, 9:18:59 UTC |
Report deadline | 25 Aug 2019, 9:18:59 UTC |
Received | 19 Aug 2019, 0:40:45 UTC |
Server state | Over |
Outcome | Success |
Client state | Done |
Exit status | 0 (0x00000000) |
Computer ID | 3911 |
Run time | 5 hours 17 min 49 sec |
CPU time | 20 hours 16 min 38 sec |
Validate state | Valid |
Credit | 563.19 |
Device peak FLOPS | 12.76 GFLOPS |
Application version | ATLAS Simulation v0.72 (native_mt) x86_64-pc-linux-gnu |
Peak working set size | 1.82 GB |
Peak swap size | 2.57 GB |
Peak disk usage | 775.88 MB |
<core_client_version>7.7.0</core_client_version> <![CDATA[ <stderr_txt> 20:22:34 (32629): wrapper (7.7.26015): starting 20:22:34 (32629): wrapper: running run_atlas (--nthreads 4) 2019-08-18 20:22:34,349: singularity image is /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 2019-08-18 20:22:34,350: sys.argv = ['run_atlas', '--nthreads', '4'] 2019-08-18 20:22:34,351: THREADS=4 2019-08-18 20:22:34,352: Checking for CVMFS 2019-08-18 20:22:36,034: CVMFS is installed 2019-08-18 20:22:36,038: OS:CentOS Linux release 7.6.1810 (Core) 2019-08-18 20:22:36,038: This is not SLC6, need to run with Singularity.... 2019-08-18 20:22:36,038: Checking Singularity... 2019-08-18 20:22:36,041: Singularity is not installed, using version from CVMFS 2019-08-18 20:22:36,041: Testing the function of Singularity... 2019-08-18 20:22:36,042: Checking singularity with cmd:/cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 hostname 2019-08-18 20:22:36,275: Singularity Works... 2019-08-18 20:22:36,276: copy /home/grid/slots/0/shared/ATLAS.root_0 2019-08-18 20:22:36,787: copy /home/grid/slots/0/shared/input.tar.gz 2019-08-18 20:22:36,788: copy /home/grid/slots/0/shared/RTE.tar.gz 2019-08-18 20:22:36,788: copy /home/grid/slots/0/shared/start_atlas.sh 2019-08-18 20:22:36,788: export ATHENA_PROC_NUMBER=4; 2019-08-18 20:22:36,812: start atlas job with PandaID=4451242745 2019-08-18 20:22:36,812: cmd = /cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec --pwd /home/grid/slots/0 -B /cvmfs,/home /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sh start_atlas.sh > runtime_log 2> runtime_log.err 2019-08-19 01:40:21,253: running cmd return value is 0 2019-08-19 01:40:21,257: Moving ./HITS.18722326._013092.pool.root.1 to shared/HITS.pool.root.1 2019-08-19 01:40:21,258: *****************The last 100 lines of the pilot log****************** 2019-08-19 01:40:21,267: 2019-08-18 23:39:43,087 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE 2019-08-18 23:39:43,087 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished 2019-08-18 23:39:43,087 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0 2019-08-18 23:39:43,087 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0 2019-08-18 23:39:43,087 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag: 2019-08-18 23:39:43,087 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0 2019-08-18 23:39:43,087 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK 2019-08-18 23:39:43,087 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 73271 s 2019-08-18 23:39:43,087 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 200 2019-08-18 23:39:43,087 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0 2019-08-18 23:39:43,087 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 7012 2019-08-18 23:39:43,087 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: 7012 2019-08-18 23:39:43,087 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 4 2019-08-18 23:39:43,087 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False 2019-08-18 23:39:43,088 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-08-18 23:39:43,088 | INFO | retrieve | pilot.util.auxiliary | make_job_report | 2019-08-18 23:39:43,088 | INFO | retrieve | pilot.control.job | has_job_completed | job 4451242745 has completed 2019-08-18 23:39:43,088 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called 2019-08-18 23:39:43,095 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /home/grid/slots/0/PanDA_Pilot-4451242745 2019-08-18 23:39:44,101 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [7012] 2019-08-18 23:39:44,101 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 7012 2019-08-18 23:39:44,101 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes 2019-08-18 23:39:45,101 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes 2019-08-18 23:39:45,102 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=7012 2019-08-18 23:39:45,148 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [7012] (in reverse order) 2019-08-18 23:39:45,188 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s) 2019-08-18 23:39:45,188 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs 2019-08-18 23:39:45,188 | INFO | retrieve | pilot.control.job | retrieve | ready for new job 2019-08-18 23:39:45,188 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging No handlers could be found for logger "pilot.util.mpi" 2019-08-18 23:39:45,698 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1 2019-08-18 23:39:55,746 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1 2019-08-18 23:39:55,747 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /home/grid/slots/0 2019-08-18 23:39:55,782 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (36180066304 B) 2019-08-18 23:39:55,783 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job 2019-08-18 23:39:55,783 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished 2019-08-18 23:39:55,806 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended 2019-08-18 23:39:55,841 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 15 threads 2019-08-18 23:39:55,842 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140248200455936)>, <ExcThread(job, started 140247984183040)>, <ExcThread(create_data_payload, started 140247593645824)>, <ExcThread(copytool_out, started 140247942219520)>, <ExcThread(job_monitor, started 140246989666048)>, <ExcThread(validate_post, started 140247585253120)>, <ExcThread(execute_payloads, started 140246981273344)>, <ExcThread(failed_post, started 140247551682304)>, <ExcThread(payload, started 140247959004928)>, <ExcThread(queue_monitor, started 140246972880640)>, <ExcThread(queue_monitoring, started 140247568467712)>, <ExcThread(validate, started 140247967397632)>, <ExcThread(data, started 140247975790336)>, <ExcThread(copytool_in, started 140247543289600)>, <ExcThread(validate_pre, started 140247950612224)>] 2019-08-18 23:39:55,909 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set 2019-08-18 23:39:55,909 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished 2019-08-18 23:39:55,945 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished 2019-08-18 23:39:56,082 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished 2019-08-18 23:39:56,143 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 12 threads 2019-08-18 23:39:56,144 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140248200455936)>, <ExcThread(job, started 140247984183040)>, <ExcThread(create_data_payload, started 140247593645824)>, <ExcThread(copytool_out, started 140247942219520)>, <ExcThread(job_monitor, started 140246989666048)>, <ExcThread(validate_post, started 140247585253120)>, <ExcThread(failed_post, started 140247551682304)>, <ExcThread(queue_monitor, started 140246972880640)>, <ExcThread(queue_monitoring, started 140247568467712)>, <ExcThread(validate, started 140247967397632)>, <ExcThread(data, started 140247975790336)>, <ExcThread(validate_pre, started 140247950612224)>] 2019-08-18 23:39:56,274 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished 2019-08-18 23:39:56,445 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 11 threads 2019-08-18 23:39:56,446 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140248200455936)>, <ExcThread(job, started 140247984183040)>, <ExcThread(create_data_payload, started 140247593645824)>, <ExcThread(copytool_out, started 140247942219520)>, <ExcThread(job_monitor, started 140246989666048)>, <ExcThread(validate_post, started 140247585253120)>, <ExcThread(failed_post, started 140247551682304)>, <ExcThread(queue_monitor, started 140246972880640)>, <ExcThread(queue_monitoring, started 140247568467712)>, <ExcThread(validate, started 140247967397632)>, <ExcThread(data, started 140247975790336)>] 2019-08-18 23:39:56,651 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set 2019-08-18 23:39:56,651 | DEBUG | job | pilot.control.job | control | [job] control thread has finished 2019-08-18 23:39:56,719 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration 2019-08-18 23:39:56,720 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set 2019-08-18 23:39:56,720 | DEBUG | data | pilot.control.data | control | [data] control thread has finished 2019-08-18 23:39:56,747 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 9 threads 2019-08-18 23:39:56,747 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140248200455936)>, <ExcThread(create_data_payload, started 140247593645824)>, <ExcThread(copytool_out, started 140247942219520)>, <ExcThread(job_monitor, started 140246989666048)>, <ExcThread(validate_post, started 140247585253120)>, <ExcThread(failed_post, started 140247551682304)>, <ExcThread(queue_monitor, started 140246972880640)>, <ExcThread(queue_monitoring, started 140247568467712)>, <ExcThread(validate, started 140247967397632)>] 2019-08-18 23:39:56,761 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished 2019-08-18 23:39:56,770 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished 2019-08-18 23:39:56,848 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 7 threads 2019-08-18 23:39:56,848 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140248200455936)>, <ExcThread(copytool_out, started 140247942219520)>, <ExcThread(job_monitor, started 140246989666048)>, <ExcThread(validate_post, started 140247585253120)>, <ExcThread(queue_monitor, started 140246972880640)>, <ExcThread(queue_monitoring, started 140247568467712)>, <ExcThread(validate, started 140247967397632)>] 2019-08-18 23:39:56,966 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished 2019-08-18 23:39:57,050 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 6 threads 2019-08-18 23:39:57,050 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140248200455936)>, <ExcThread(copytool_out, started 140247942219520)>, <ExcThread(job_monitor, started 140246989666048)>, <ExcThread(queue_monitor, started 140246972880640)>, <ExcThread(queue_monitoring, started 140247568467712)>, <ExcThread(validate, started 140247967397632)>] 2019-08-18 23:39:57,125 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished 2019-08-18 23:39:57,151 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 5 threads 2019-08-18 23:39:57,151 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140248200455936)>, <ExcThread(copytool_out, started 140247942219520)>, <ExcThread(job_monitor, started 140246989666048)>, <ExcThread(queue_monitor, started 140246972880640)>, <ExcThread(queue_monitoring, started 140247568467712)>] 2019-08-18 23:39:57,570 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration 2019-08-18 23:39:57,570 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration 2019-08-18 23:39:57,570 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished 2019-08-18 23:39:57,655 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 4 threads 2019-08-18 23:39:57,655 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140248200455936)>, <ExcThread(copytool_out, started 140247942219520)>, <ExcThread(job_monitor, started 140246989666048)>, <ExcThread(queue_monitoring, started 140247568467712)>] 2019-08-18 23:39:57,720 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished 2019-08-18 23:39:57,756 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 3 threads 2019-08-18 23:39:57,756 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140248200455936)>, <ExcThread(job_monitor, started 140246989666048)>, <ExcThread(queue_monitoring, started 140247568467712)>] 2019-08-18 23:40:00,571 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished 2019-08-18 23:40:00,576 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 2 threads 2019-08-18 23:40:00,576 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140248200455936)>, <ExcThread(job_monitor, started 140246989666048)>] 2019-08-18 23:40:20,773 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 61 s) 2019-08-18 23:40:20,773 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished 2019-08-18 23:40:20,820 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0) 2019-08-18 23:40:20,821 | INFO | MainThread | root | wrap_up | traces error code: 0 2019-08-18 23:40:20,821 | INFO | MainThread | root | wrap_up | pilot has finished 2019-08-18 23:40:21 UTC [wrapper] ==== pilot stdout END ==== 2019-08-18 23:40:21 UTC [wrapper] ==== wrapper stdout RESUME ==== 2019-08-18 23:40:21 UTC [wrapper] Pilot exit status: 0 2019-08-18 23:40:21 UTC [wrapper] STATUSCODE: 0 2019-08-18 23:40:21 UTC [wrapper] apfmon messages muted ---- find pandaID.out ---- total 44 -rw-------. 1 grid grid 11357 Jul 25 16:38 LICENSE drwx------. 14 grid grid 216 Aug 18 20:22 pilot -rwx------. 1 grid grid 20463 Jul 25 16:38 pilot.py -rw-------. 1 grid grid 8 Aug 7 13:02 PILOTVERSION -rw-------. 1 grid grid 2251 Jul 25 16:38 README.md -rw-------. 1 grid grid 221 Jul 25 16:38 TODO.md 2019-08-18 23:40:21 UTC [wrapper] Test setup, not cleaning 2019-08-18 23:40:21 UTC [wrapper] ==== wrapper stdout END ==== 2019-08-18 23:40:21 UTC [wrapper] ==== wrapper stderr END ==== 2019-08-18 23:40:21 UTC [wrapper] wrapper wrapperexiting ec=0, duration=19064 2019-08-18 23:40:21 UTC [wrapper] apfmon messages muted 2019-08-19 01:40:21,271: ***************diag file************ 2019-08-19 01:40:21,271: runtimeenvironments=APPS/HEP/ATLAS-SITE; Processors=1 WallTime=19064.06s KernelTime=504.11s UserTime=72997.62s CPUUsage=385% MaxResidentMemory=1944896kB AverageResidentMemory=0kB AverageTotalMemory=0kB AverageUnsharedMemory=0kB AverageUnsharedStack=0kB AverageSharedMemory=0kB PageSize=4096B MajorPageFaults=525965 MinorPageFaults=21032743 Swaps=0 ForcedSwitches=8393839 WaitSwitches=11354101 Inputs=126867000 Outputs=1008384 SocketReceived=0 SocketSent=0 Signals=0 nodename=David_Cameron@dcameron04.cern.ch exitcode=0 2019-08-19 01:40:21,283: ******************************WorkDir*********************** 2019-08-19 01:40:21,283: total 286476 drwxrwx--x. 6 grid grid 4096 Aug 19 01:40 . drwxr-x--x. 3 grid grid 15 Aug 8 09:08 .. -rw-------. 1 grid grid 7440670 Aug 18 20:22 agis_ddmendpoints.json -rw-------. 1 grid grid 4400665 Aug 18 20:22 agis_schedconf.cvmfs.json drwx------. 2 grid grid 6 Aug 18 20:22 .alrb drwxr-xr-x. 3 grid grid 17 Aug 18 20:22 APPS -rw-------. 1 grid grid 538 Aug 18 20:22 .asetup -rw-------. 1 grid grid 826 Aug 18 20:23 .asetup.save -rw-rw-r--. 1 grid grid 0 Aug 18 20:22 boinc_lockfile -rw-rw-r--. 1 grid grid 8192 Aug 19 01:40 boinc_mmap_file -rw-rw-r--. 1 grid grid 537 Aug 19 01:32 boinc_task_state.xml -rw-rw-r--. 1 grid grid 279032208 Aug 18 20:22 EVNT.18605758._000419.pool.root.1 -rw-------. 1 grid grid 72555 Aug 19 01:39 heartbeat.json -rw-rw-r--. 1 grid grid 5866 Aug 18 20:22 init_data.xml -rw-rw-r--. 1 grid grid 261607 Aug 18 20:22 input.tar.gz -rw-rw-r--. 1 grid grid 112 Aug 18 20:22 job.xml -rw-------. 1 grid grid 520 Aug 19 01:40 kBFMDmJxTJvnShfckohDCDFpABFKDmABFKDmnrZLDmABFKDmL0ynmm.diag -rw-------. 1 grid grid 866166 Aug 19 01:40 log.18722326._013092.job.log.1 -rw-------. 1 grid grid 853643 Aug 19 01:39 log.18722326._013092.job.log.tgz.1 -rw-------. 1 grid grid 391 Aug 19 01:40 output.list -rw-------. 1 grid grid 2914 Aug 18 08:34 pandaJobData.out drwx------. 3 grid grid 174 Aug 7 13:02 pilot2 -rw-r--r--. 1 grid grid 253018 Aug 18 08:34 pilot2.tar.gz -rw-------. 1 grid grid 11857 Aug 19 01:40 pilotlog.txt -rw-r--r--. 1 grid grid 4468 Aug 18 08:34 queuedata.json -rw-rw-r--. 1 grid grid 815 Aug 18 20:22 RTE.tar.gz -rwxr-xr-x. 1 grid grid 8466 Aug 18 20:22 run_atlas -rwx------. 1 grid grid 12641 Aug 18 08:34 runpilot2-wrapper.sh -rw-rw-r--. 1 grid grid 692 Aug 19 01:40 runtime_log -rw-rw-r--. 1 grid grid 6807 Aug 19 01:40 runtime_log.err drwxrwx--x. 2 grid grid 131 Aug 19 01:40 shared -rw-rw-r--. 1 grid grid 8688 Aug 18 20:22 start_atlas.sh -rw-rw-r--. 1 grid grid 19863 Aug 19 01:40 stderr.txt -rw-rw-r--. 1 grid grid 107 Aug 18 20:22 wrapper_26015_x86_64-pc-linux-gnu -rw-rw-r--. 1 grid grid 28 Aug 19 01:40 wrapper_checkpoint.txt 2019-08-19 01:40:21,284: running start_atlas return value is 0 2019-08-19 01:40:21,284: Parent exit 0 2019-08-19 01:40:21,286: child process exit 0 01:40:22 (32629): run_atlas exited; CPU time 72998.042456 01:40:22 (32629): called boinc_finish(0) </stderr_txt> ]]>
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