Name | 64JKDmqAcJvnShfckohDCDFpABFKDmABFKDmqJnLDmABFKDmvRDYvn_0 |
Workunit | 1919042 |
Created | 18 Aug 2019, 15:21:51 UTC |
Sent | 19 Aug 2019, 19:38:12 UTC |
Report deadline | 26 Aug 2019, 19:38:12 UTC |
Received | 20 Aug 2019, 7:31:07 UTC |
Server state | Over |
Outcome | Success |
Client state | Done |
Exit status | 0 (0x00000000) |
Computer ID | 3911 |
Run time | 3 hours 21 min 12 sec |
CPU time | 12 hours 35 min 11 sec |
Validate state | Valid |
Credit | 356.54 |
Device peak FLOPS | 12.76 GFLOPS |
Application version | ATLAS Simulation v0.72 (native_mt) x86_64-pc-linux-gnu |
Peak working set size | 1.81 GB |
Peak swap size | 3.72 GB |
Peak disk usage | 819.41 MB |
<core_client_version>7.7.0</core_client_version> <![CDATA[ <stderr_txt> 05:09:36 (19425): wrapper (7.7.26015): starting 05:09:36 (19425): wrapper: running run_atlas (--nthreads 4) 2019-08-20 05:09:36,112: singularity image is /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 2019-08-20 05:09:36,112: sys.argv = ['run_atlas', '--nthreads', '4'] 2019-08-20 05:09:36,113: THREADS=4 2019-08-20 05:09:36,114: Checking for CVMFS 2019-08-20 05:09:37,457: CVMFS is installed 2019-08-20 05:09:37,461: OS:CentOS Linux release 7.6.1810 (Core) 2019-08-20 05:09:37,461: This is not SLC6, need to run with Singularity.... 2019-08-20 05:09:37,461: Checking Singularity... 2019-08-20 05:09:37,464: Singularity is not installed, using version from CVMFS 2019-08-20 05:09:37,464: Testing the function of Singularity... 2019-08-20 05:09:37,464: Checking singularity with cmd:/cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 hostname 2019-08-20 05:09:37,672: Singularity Works... 2019-08-20 05:09:37,673: copy /home/grid/slots/0/shared/ATLAS.root_0 2019-08-20 05:09:38,123: copy /home/grid/slots/0/shared/input.tar.gz 2019-08-20 05:09:38,124: copy /home/grid/slots/0/shared/RTE.tar.gz 2019-08-20 05:09:38,124: copy /home/grid/slots/0/shared/start_atlas.sh 2019-08-20 05:09:38,124: export ATHENA_PROC_NUMBER=4; 2019-08-20 05:09:38,148: start atlas job with PandaID=4451804129 2019-08-20 05:09:38,149: cmd = /cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec --pwd /home/grid/slots/0 -B /cvmfs,/home /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sh start_atlas.sh > runtime_log 2> runtime_log.err 2019-08-20 08:30:45,814: running cmd return value is 0 2019-08-20 08:30:45,817: Moving ./HITS.18722222._017580.pool.root.1 to shared/HITS.pool.root.1 2019-08-20 08:30:45,818: *****************The last 100 lines of the pilot log****************** 2019-08-20 08:30:45,827: 2019-08-20 06:30:12,278 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-08-20 06:30:12,278 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4451804129 2019-08-20 06:30:12,279 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18722222 2019-08-20 06:30:12,279 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none) 2019-08-20 06:30:12,279 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE 2019-08-20 06:30:12,279 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished 2019-08-20 06:30:12,279 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0 2019-08-20 06:30:12,279 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0 2019-08-20 06:30:12,279 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag: 2019-08-20 06:30:12,279 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0 2019-08-20 06:30:12,279 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK 2019-08-20 06:30:12,279 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 45489 s 2019-08-20 06:30:12,279 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 200 2019-08-20 06:30:12,279 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0 2019-08-20 06:30:12,279 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 26114 2019-08-20 06:30:12,280 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: 26114 2019-08-20 06:30:12,280 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 4 2019-08-20 06:30:12,280 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False 2019-08-20 06:30:12,280 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-08-20 06:30:12,280 | INFO | retrieve | pilot.util.auxiliary | make_job_report | 2019-08-20 06:30:12,280 | INFO | retrieve | pilot.control.job | has_job_completed | job 4451804129 has completed 2019-08-20 06:30:12,280 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called 2019-08-20 06:30:12,290 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /home/grid/slots/0/PanDA_Pilot-4451804129 2019-08-20 06:30:13,296 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [26114] 2019-08-20 06:30:13,296 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 26114 2019-08-20 06:30:13,296 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes 2019-08-20 06:30:14,301 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes 2019-08-20 06:30:14,302 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=26114 2019-08-20 06:30:14,350 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [26114] (in reverse order) 2019-08-20 06:30:14,389 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s) 2019-08-20 06:30:14,389 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs 2019-08-20 06:30:14,389 | INFO | retrieve | pilot.control.job | retrieve | ready for new job 2019-08-20 06:30:14,389 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging No handlers could be found for logger "pilot.util.mpi" 2019-08-20 06:30:14,900 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1 2019-08-20 06:30:24,915 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1 2019-08-20 06:30:24,915 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /home/grid/slots/0 2019-08-20 06:30:24,948 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (36124491776 B) 2019-08-20 06:30:24,948 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job 2019-08-20 06:30:24,949 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished 2019-08-20 06:30:25,138 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished 2019-08-20 06:30:25,149 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished 2019-08-20 06:30:25,175 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished 2019-08-20 06:30:25,214 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set 2019-08-20 06:30:25,214 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished 2019-08-20 06:30:25,284 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 12 threads 2019-08-20 06:30:25,285 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139782581712640)>, <ExcThread(job, started 139782365439744)>, <ExcThread(failed_post, started 139781505799936)>, <ExcThread(validate_pre, started 139782101387008)>, <ExcThread(queue_monitor, started 139781489014528)>, <ExcThread(data, started 139782357047040)>, <ExcThread(copytool_out, started 139782118172416)>, <ExcThread(job_monitor, started 139781514192640)>, <ExcThread(create_data_payload, started 139782126565120)>, <ExcThread(validate_post, started 139781522585344)>, <ExcThread(queue_monitoring, started 139782092994304)>, <ExcThread(monitor, started 139782109779712)>] 2019-08-20 06:30:25,312 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set 2019-08-20 06:30:25,312 | DEBUG | data | pilot.control.data | control | [data] control thread has finished 2019-08-20 06:30:25,351 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished 2019-08-20 06:30:25,457 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished 2019-08-20 06:30:25,468 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set 2019-08-20 06:30:25,468 | DEBUG | job | pilot.control.job | control | [job] control thread has finished 2019-08-20 06:30:25,586 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 8 threads 2019-08-20 06:30:25,587 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139782581712640)>, <ExcThread(validate_pre, started 139782101387008)>, <ExcThread(queue_monitor, started 139781489014528)>, <ExcThread(copytool_out, started 139782118172416)>, <ExcThread(job_monitor, started 139781514192640)>, <ExcThread(validate_post, started 139781522585344)>, <ExcThread(queue_monitoring, started 139782092994304)>, <ExcThread(monitor, started 139782109779712)>] 2019-08-20 06:30:25,588 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration 2019-08-20 06:30:25,840 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended 2019-08-20 06:30:25,889 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 7 threads 2019-08-20 06:30:25,889 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139782581712640)>, <ExcThread(validate_pre, started 139782101387008)>, <ExcThread(queue_monitor, started 139781489014528)>, <ExcThread(copytool_out, started 139782118172416)>, <ExcThread(job_monitor, started 139781514192640)>, <ExcThread(validate_post, started 139781522585344)>, <ExcThread(queue_monitoring, started 139782092994304)>] 2019-08-20 06:30:25,898 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration 2019-08-20 06:30:25,898 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished 2019-08-20 06:30:25,990 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 6 threads 2019-08-20 06:30:25,990 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139782581712640)>, <ExcThread(queue_monitor, started 139781489014528)>, <ExcThread(copytool_out, started 139782118172416)>, <ExcThread(job_monitor, started 139781514192640)>, <ExcThread(validate_post, started 139781522585344)>, <ExcThread(queue_monitoring, started 139782092994304)>] 2019-08-20 06:30:26,501 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished 2019-08-20 06:30:26,594 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 5 threads 2019-08-20 06:30:26,595 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139782581712640)>, <ExcThread(queue_monitor, started 139781489014528)>, <ExcThread(copytool_out, started 139782118172416)>, <ExcThread(job_monitor, started 139781514192640)>, <ExcThread(queue_monitoring, started 139782092994304)>] 2019-08-20 06:30:26,785 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration 2019-08-20 06:30:26,786 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished 2019-08-20 06:30:26,796 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 4 threads 2019-08-20 06:30:26,797 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139782581712640)>, <ExcThread(copytool_out, started 139782118172416)>, <ExcThread(job_monitor, started 139781514192640)>, <ExcThread(queue_monitoring, started 139782092994304)>] 2019-08-20 06:30:26,898 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished 2019-08-20 06:30:26,999 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 3 threads 2019-08-20 06:30:26,999 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139782581712640)>, <ExcThread(job_monitor, started 139781514192640)>, <ExcThread(queue_monitoring, started 139782092994304)>] 2019-08-20 06:30:28,589 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished 2019-08-20 06:30:28,610 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 2 threads 2019-08-20 06:30:28,610 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139782581712640)>, <ExcThread(job_monitor, started 139781514192640)>] 2019-08-20 06:30:45,326 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 62 s) 2019-08-20 06:30:45,326 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished 2019-08-20 06:30:45,425 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0) 2019-08-20 06:30:45,426 | INFO | MainThread | root | wrap_up | traces error code: 0 2019-08-20 06:30:45,426 | INFO | MainThread | root | wrap_up | pilot has finished 2019-08-20 06:30:45 UTC [wrapper] ==== pilot stdout END ==== 2019-08-20 06:30:45 UTC [wrapper] ==== wrapper stdout RESUME ==== 2019-08-20 06:30:45 UTC [wrapper] Pilot exit status: 0 2019-08-20 06:30:45 UTC [wrapper] STATUSCODE: 0 2019-08-20 06:30:45 UTC [wrapper] apfmon messages muted ---- find pandaID.out ---- total 44 -rw-------. 1 grid grid 11357 Jul 25 16:38 LICENSE drwx------. 14 grid grid 216 Aug 20 05:09 pilot -rwx------. 1 grid grid 20463 Jul 25 16:38 pilot.py -rw-------. 1 grid grid 8 Aug 7 13:02 PILOTVERSION -rw-------. 1 grid grid 2251 Jul 25 16:38 README.md -rw-------. 1 grid grid 221 Jul 25 16:38 TODO.md 2019-08-20 06:30:45 UTC [wrapper] Test setup, not cleaning 2019-08-20 06:30:45 UTC [wrapper] ==== wrapper stdout END ==== 2019-08-20 06:30:45 UTC [wrapper] ==== wrapper stderr END ==== 2019-08-20 06:30:45 UTC [wrapper] wrapper wrapperexiting ec=0, duration=12067 2019-08-20 06:30:45 UTC [wrapper] apfmon messages muted 2019-08-20 08:30:45,831: ***************diag file************ 2019-08-20 08:30:45,831: runtimeenvironments=APPS/HEP/ATLAS-SITE; Processors=1 WallTime=12067.31s KernelTime=338.57s UserTime=45311.15s CPUUsage=378% MaxResidentMemory=1910104kB AverageResidentMemory=0kB AverageTotalMemory=0kB AverageUnsharedMemory=0kB AverageUnsharedStack=0kB AverageSharedMemory=0kB PageSize=4096B MajorPageFaults=390304 MinorPageFaults=16618043 Swaps=0 ForcedSwitches=5293822 WaitSwitches=8143047 Inputs=94547576 Outputs=780744 SocketReceived=0 SocketSent=0 Signals=0 nodename=David_Cameron@dcameron04.cern.ch exitcode=0 2019-08-20 08:30:45,841: ******************************WorkDir*********************** 2019-08-20 08:30:45,841: total 267032 drwxrwx--x. 6 grid grid 4096 Aug 20 08:30 . drwxr-x--x. 3 grid grid 15 Aug 8 09:08 .. -rw-------. 1 grid grid 517 Aug 20 08:30 64JKDmqAcJvnShfckohDCDFpABFKDmABFKDmqJnLDmABFKDmvRDYvn.diag -rw-------. 1 grid grid 7442625 Aug 20 05:09 agis_ddmendpoints.json -rw-------. 1 grid grid 4371593 Aug 20 05:09 agis_schedconf.cvmfs.json drwx------. 2 grid grid 6 Aug 20 05:09 .alrb drwxr-xr-x. 3 grid grid 17 Aug 20 05:09 APPS -rw-------. 1 grid grid 538 Aug 20 05:09 .asetup -rw-------. 1 grid grid 826 Aug 20 05:10 .asetup.save -rw-rw-r--. 1 grid grid 0 Aug 20 05:09 boinc_lockfile -rw-rw-r--. 1 grid grid 8192 Aug 20 08:30 boinc_mmap_file -rw-rw-r--. 1 grid grid 537 Aug 20 08:22 boinc_task_state.xml -rw-rw-r--. 1 grid grid 259311116 Aug 20 05:09 EVNT.18605748._000417.pool.root.1 -rw-------. 1 grid grid 117190 Aug 20 08:30 heartbeat.json -rw-rw-r--. 1 grid grid 5866 Aug 20 05:09 init_data.xml -rw-rw-r--. 1 grid grid 261604 Aug 20 05:09 input.tar.gz -rw-rw-r--. 1 grid grid 112 Aug 20 05:09 job.xml -rw-------. 1 grid grid 663170 Aug 20 08:30 log.18722222._017580.job.log.1 -rw-------. 1 grid grid 848404 Aug 20 08:29 log.18722222._017580.job.log.tgz.1 -rw-------. 1 grid grid 391 Aug 20 08:30 output.list -rw-------. 1 grid grid 2921 Aug 18 17:21 pandaJobData.out drwx------. 3 grid grid 174 Aug 7 13:02 pilot2 -rw-r--r--. 1 grid grid 253018 Aug 18 16:36 pilot2.tar.gz -rw-------. 1 grid grid 9902 Aug 20 08:30 pilotlog.txt -rw-r--r--. 1 grid grid 4468 Aug 18 17:17 queuedata.json -rw-rw-r--. 1 grid grid 815 Aug 20 05:09 RTE.tar.gz -rwxr-xr-x. 1 grid grid 8466 Aug 20 05:09 run_atlas -rwx------. 1 grid grid 12641 Aug 18 17:21 runpilot2-wrapper.sh -rw-rw-r--. 1 grid grid 692 Aug 20 08:30 runtime_log -rw-rw-r--. 1 grid grid 6807 Aug 20 08:30 runtime_log.err drwxrwx--x. 2 grid grid 131 Aug 20 08:30 shared -rw-rw-r--. 1 grid grid 8688 Aug 20 05:09 start_atlas.sh -rw-rw-r--. 1 grid grid 18508 Aug 20 08:30 stderr.txt -rw-rw-r--. 1 grid grid 107 Aug 20 05:09 wrapper_26015_x86_64-pc-linux-gnu -rw-rw-r--. 1 grid grid 28 Aug 20 08:30 wrapper_checkpoint.txt 2019-08-20 08:30:45,841: running start_atlas return value is 0 2019-08-20 08:30:45,841: Parent exit 0 2019-08-20 08:30:45,843: child process exit 0 08:30:46 (19425): run_atlas exited; CPU time 45311.537953 08:30:46 (19425): called boinc_finish(0) </stderr_txt> ]]>
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