Name | ve1MDmAceJvnShfckohDCDFpABFKDmABFKDmpJrLDmABFKDmRMuuDm_0 |
Workunit | 1919092 |
Created | 18 Aug 2019, 17:58:08 UTC |
Sent | 19 Aug 2019, 0:40:45 UTC |
Report deadline | 26 Aug 2019, 0:40:45 UTC |
Received | 19 Aug 2019, 12:48:02 UTC |
Server state | Over |
Outcome | Success |
Client state | Done |
Exit status | 0 (0x00000000) |
Computer ID | 3911 |
Run time | 1 hours 54 min 59 sec |
CPU time | 6 hours 58 min 50 sec |
Validate state | Valid |
Credit | 203.77 |
Device peak FLOPS | 12.76 GFLOPS |
Application version | ATLAS Simulation v0.72 (native_mt) x86_64-pc-linux-gnu |
Peak working set size | 1.78 GB |
Peak swap size | 3.42 GB |
Peak disk usage | 726.59 MB |
<core_client_version>7.7.0</core_client_version> <![CDATA[ <stderr_txt> 11:52:42 (27942): wrapper (7.7.26015): starting 11:52:42 (27942): wrapper: running run_atlas (--nthreads 4) 2019-08-19 11:52:42,859: singularity image is /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 2019-08-19 11:52:42,859: sys.argv = ['run_atlas', '--nthreads', '4'] 2019-08-19 11:52:42,860: THREADS=4 2019-08-19 11:52:42,861: Checking for CVMFS 2019-08-19 11:52:44,062: CVMFS is installed 2019-08-19 11:52:44,066: OS:CentOS Linux release 7.6.1810 (Core) 2019-08-19 11:52:44,066: This is not SLC6, need to run with Singularity.... 2019-08-19 11:52:44,066: Checking Singularity... 2019-08-19 11:52:44,070: Singularity is not installed, using version from CVMFS 2019-08-19 11:52:44,070: Testing the function of Singularity... 2019-08-19 11:52:44,070: Checking singularity with cmd:/cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 hostname 2019-08-19 11:52:44,287: Singularity Works... 2019-08-19 11:52:44,287: copy /home/grid/slots/0/shared/ATLAS.root_0 2019-08-19 11:52:44,886: copy /home/grid/slots/0/shared/input.tar.gz 2019-08-19 11:52:44,888: copy /home/grid/slots/0/shared/RTE.tar.gz 2019-08-19 11:52:44,888: copy /home/grid/slots/0/shared/start_atlas.sh 2019-08-19 11:52:44,889: export ATHENA_PROC_NUMBER=4; 2019-08-19 11:52:44,914: start atlas job with PandaID=4452111049 2019-08-19 11:52:44,915: cmd = /cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec --pwd /home/grid/slots/0 -B /cvmfs,/home /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sh start_atlas.sh > runtime_log 2> runtime_log.err 2019-08-19 13:47:39,224: running cmd return value is 0 2019-08-19 13:47:39,227: Moving ./HITS.18722144._019764.pool.root.1 to shared/HITS.pool.root.1 2019-08-19 13:47:39,228: *****************The last 100 lines of the pilot log****************** 2019-08-19 13:47:39,235: 2019-08-19 11:47:02,340 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18722144 2019-08-19 11:47:02,340 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none) 2019-08-19 11:47:02,341 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE 2019-08-19 11:47:02,341 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished 2019-08-19 11:47:02,341 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0 2019-08-19 11:47:02,341 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0 2019-08-19 11:47:02,341 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag: 2019-08-19 11:47:02,341 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0 2019-08-19 11:47:02,341 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK 2019-08-19 11:47:02,341 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 25234 s 2019-08-19 11:47:02,341 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 200 2019-08-19 11:47:02,341 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0 2019-08-19 11:47:02,341 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 2206 2019-08-19 11:47:02,341 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: 2206 2019-08-19 11:47:02,341 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 4 2019-08-19 11:47:02,341 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False 2019-08-19 11:47:02,341 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-08-19 11:47:02,342 | INFO | retrieve | pilot.util.auxiliary | make_job_report | 2019-08-19 11:47:02,342 | INFO | retrieve | pilot.control.job | has_job_completed | job 4452111049 has completed 2019-08-19 11:47:02,342 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called 2019-08-19 11:47:02,349 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /home/grid/slots/0/PanDA_Pilot-4452111049 2019-08-19 11:47:03,354 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [2206] 2019-08-19 11:47:03,355 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 2206 2019-08-19 11:47:03,355 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes 2019-08-19 11:47:04,357 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes 2019-08-19 11:47:04,357 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=2206 2019-08-19 11:47:04,414 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [2206] (in reverse order) 2019-08-19 11:47:04,456 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s) 2019-08-19 11:47:04,457 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs 2019-08-19 11:47:04,457 | INFO | retrieve | pilot.control.job | retrieve | ready for new job 2019-08-19 11:47:04,457 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging No handlers could be found for logger "pilot.util.mpi" 2019-08-19 11:47:04,968 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1 2019-08-19 11:47:14,972 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1 2019-08-19 11:47:14,973 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /home/grid/slots/0 2019-08-19 11:47:15,005 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (35472277504 B) 2019-08-19 11:47:15,005 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job 2019-08-19 11:47:15,006 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished 2019-08-19 11:47:15,030 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration 2019-08-19 11:47:15,032 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration 2019-08-19 11:47:15,047 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended 2019-08-19 11:47:15,089 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set 2019-08-19 11:47:15,090 | DEBUG | job | pilot.control.job | control | [job] control thread has finished 2019-08-19 11:47:15,102 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished 2019-08-19 11:47:15,200 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished 2019-08-19 11:47:15,237 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 12 threads 2019-08-19 11:47:15,238 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140418009470720)>, <ExcThread(queue_monitoring, started 140417160959744)>, <ExcThread(queue_monitor, started 140417152567040)>, <ExcThread(job_monitor, started 140417169352448)>, <ExcThread(copytool_in, started 140417144174336)>, <ExcThread(execute_payloads, started 140416640874240)>, <ExcThread(create_data_payload, started 140417697830656)>, <ExcThread(validate_post, started 140417135781632)>, <ExcThread(data, started 140417706223360)>, <ExcThread(failed_post, started 140417127388928)>, <ExcThread(copytool_out, started 140417672652544)>, <ExcThread(payload, started 140417689437952)>] 2019-08-19 11:47:15,247 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set 2019-08-19 11:47:15,247 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished 2019-08-19 11:47:15,439 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 11 threads 2019-08-19 11:47:15,440 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140418009470720)>, <ExcThread(queue_monitoring, started 140417160959744)>, <ExcThread(queue_monitor, started 140417152567040)>, <ExcThread(job_monitor, started 140417169352448)>, <ExcThread(copytool_in, started 140417144174336)>, <ExcThread(execute_payloads, started 140416640874240)>, <ExcThread(create_data_payload, started 140417697830656)>, <ExcThread(validate_post, started 140417135781632)>, <ExcThread(data, started 140417706223360)>, <ExcThread(failed_post, started 140417127388928)>, <ExcThread(copytool_out, started 140417672652544)>] 2019-08-19 11:47:15,889 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished 2019-08-19 11:47:16,031 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished 2019-08-19 11:47:16,037 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished 2019-08-19 11:47:16,043 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 8 threads 2019-08-19 11:47:16,043 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140418009470720)>, <ExcThread(queue_monitoring, started 140417160959744)>, <ExcThread(queue_monitor, started 140417152567040)>, <ExcThread(job_monitor, started 140417169352448)>, <ExcThread(execute_payloads, started 140416640874240)>, <ExcThread(create_data_payload, started 140417697830656)>, <ExcThread(data, started 140417706223360)>, <ExcThread(failed_post, started 140417127388928)>] 2019-08-19 11:47:16,057 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set 2019-08-19 11:47:16,057 | DEBUG | data | pilot.control.data | control | [data] control thread has finished 2019-08-19 11:47:16,144 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 7 threads 2019-08-19 11:47:16,144 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140418009470720)>, <ExcThread(queue_monitoring, started 140417160959744)>, <ExcThread(queue_monitor, started 140417152567040)>, <ExcThread(job_monitor, started 140417169352448)>, <ExcThread(execute_payloads, started 140416640874240)>, <ExcThread(create_data_payload, started 140417697830656)>, <ExcThread(failed_post, started 140417127388928)>] 2019-08-19 11:47:16,169 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished 2019-08-19 11:47:16,245 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 6 threads 2019-08-19 11:47:16,245 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140418009470720)>, <ExcThread(queue_monitoring, started 140417160959744)>, <ExcThread(queue_monitor, started 140417152567040)>, <ExcThread(job_monitor, started 140417169352448)>, <ExcThread(execute_payloads, started 140416640874240)>, <ExcThread(failed_post, started 140417127388928)>] 2019-08-19 11:47:16,280 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished 2019-08-19 11:47:16,346 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 5 threads 2019-08-19 11:47:16,346 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140418009470720)>, <ExcThread(queue_monitoring, started 140417160959744)>, <ExcThread(queue_monitor, started 140417152567040)>, <ExcThread(job_monitor, started 140417169352448)>, <ExcThread(failed_post, started 140417127388928)>] 2019-08-19 11:47:16,445 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration 2019-08-19 11:47:16,445 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished 2019-08-19 11:47:16,447 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 4 threads 2019-08-19 11:47:16,447 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140418009470720)>, <ExcThread(queue_monitoring, started 140417160959744)>, <ExcThread(job_monitor, started 140417169352448)>, <ExcThread(failed_post, started 140417127388928)>] 2019-08-19 11:47:16,583 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished 2019-08-19 11:47:16,649 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 3 threads 2019-08-19 11:47:16,649 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140418009470720)>, <ExcThread(queue_monitoring, started 140417160959744)>, <ExcThread(job_monitor, started 140417169352448)>] 2019-08-19 11:47:18,033 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished 2019-08-19 11:47:18,059 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 2 threads 2019-08-19 11:47:18,060 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140418009470720)>, <ExcThread(job_monitor, started 140417169352448)>] 2019-08-19 11:47:38,753 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 61 s) 2019-08-19 11:47:38,753 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished 2019-08-19 11:47:38,818 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0) 2019-08-19 11:47:38,819 | INFO | MainThread | root | wrap_up | traces error code: 0 2019-08-19 11:47:38,819 | INFO | MainThread | root | wrap_up | pilot has finished 2019-08-19 11:47:39 UTC [wrapper] ==== pilot stdout END ==== 2019-08-19 11:47:39 UTC [wrapper] ==== wrapper stdout RESUME ==== 2019-08-19 11:47:39 UTC [wrapper] Pilot exit status: 0 2019-08-19 11:47:39 UTC [wrapper] STATUSCODE: 0 2019-08-19 11:47:39 UTC [wrapper] apfmon messages muted ---- find pandaID.out ---- total 44 -rw-------. 1 grid grid 11357 Jul 25 16:38 LICENSE drwx------. 14 grid grid 216 Aug 19 11:52 pilot -rwx------. 1 grid grid 20463 Jul 25 16:38 pilot.py -rw-------. 1 grid grid 8 Aug 7 13:02 PILOTVERSION -rw-------. 1 grid grid 2251 Jul 25 16:38 README.md -rw-------. 1 grid grid 221 Jul 25 16:38 TODO.md 2019-08-19 11:47:39 UTC [wrapper] Test setup, not cleaning 2019-08-19 11:47:39 UTC [wrapper] ==== wrapper stdout END ==== 2019-08-19 11:47:39 UTC [wrapper] ==== wrapper stderr END ==== 2019-08-19 11:47:39 UTC [wrapper] wrapper wrapperexiting ec=0, duration=6894 2019-08-19 11:47:39 UTC [wrapper] apfmon messages muted 2019-08-19 13:47:39,238: ***************diag file************ 2019-08-19 13:47:39,239: runtimeenvironments=APPS/HEP/ATLAS-SITE; Processors=1 WallTime=6893.93s KernelTime=216.67s UserTime=25130.35s CPUUsage=367% MaxResidentMemory=1944648kB AverageResidentMemory=0kB AverageTotalMemory=0kB AverageUnsharedMemory=0kB AverageUnsharedStack=0kB AverageSharedMemory=0kB PageSize=4096B MajorPageFaults=287180 MinorPageFaults=13269039 Swaps=0 ForcedSwitches=2946769 WaitSwitches=5696265 Inputs=69742040 Outputs=570416 SocketReceived=0 SocketSent=0 Signals=0 nodename=David_Cameron@dcameron04.cern.ch exitcode=0 2019-08-19 13:47:39,249: ******************************WorkDir*********************** 2019-08-19 13:47:39,249: total 249600 drwxrwx--x. 6 grid grid 4096 Aug 19 13:47 . drwxr-x--x. 3 grid grid 15 Aug 8 09:08 .. -rw-------. 1 grid grid 7440670 Aug 19 11:53 agis_ddmendpoints.json -rw-------. 1 grid grid 4371736 Aug 19 11:52 agis_schedconf.cvmfs.json drwx------. 2 grid grid 6 Aug 19 11:52 .alrb drwxr-xr-x. 3 grid grid 17 Aug 19 11:52 APPS -rw-------. 1 grid grid 538 Aug 19 11:52 .asetup -rw-------. 1 grid grid 826 Aug 19 11:53 .asetup.save -rw-rw-r--. 1 grid grid 0 Aug 19 11:52 boinc_lockfile -rw-rw-r--. 1 grid grid 8192 Aug 19 13:47 boinc_mmap_file -rw-rw-r--. 1 grid grid 536 Aug 19 13:42 boinc_task_state.xml -rw-rw-r--. 1 grid grid 241766684 Aug 19 11:52 EVNT.18605742._000384.pool.root.1 -rw-------. 1 grid grid 66633 Aug 19 13:47 heartbeat.json -rw-rw-r--. 1 grid grid 5866 Aug 19 11:52 init_data.xml -rw-rw-r--. 1 grid grid 261617 Aug 19 11:52 input.tar.gz -rw-rw-r--. 1 grid grid 112 Aug 19 11:52 job.xml -rw-------. 1 grid grid 433190 Aug 19 13:47 log.18722144._019764.job.log.1 -rw-------. 1 grid grid 825182 Aug 19 13:46 log.18722144._019764.job.log.tgz.1 -rw-------. 1 grid grid 391 Aug 19 13:47 output.list -rw-------. 1 grid grid 2920 Aug 18 19:57 pandaJobData.out drwx------. 3 grid grid 174 Aug 7 13:02 pilot2 -rw-r--r--. 1 grid grid 253018 Aug 18 19:31 pilot2.tar.gz -rw-------. 1 grid grid 10794 Aug 19 13:47 pilotlog.txt -rw-r--r--. 1 grid grid 4468 Aug 18 19:57 queuedata.json -rw-rw-r--. 1 grid grid 815 Aug 19 11:52 RTE.tar.gz -rwxr-xr-x. 1 grid grid 8466 Aug 19 11:52 run_atlas -rwx------. 1 grid grid 12641 Aug 18 19:57 runpilot2-wrapper.sh -rw-rw-r--. 1 grid grid 692 Aug 19 13:47 runtime_log -rw-rw-r--. 1 grid grid 6807 Aug 19 13:47 runtime_log.err drwxrwx--x. 2 grid grid 131 Aug 19 13:47 shared -rw-rw-r--. 1 grid grid 8688 Aug 19 11:52 start_atlas.sh -rw-rw-r--. 1 grid grid 19072 Aug 19 13:47 stderr.txt -rw-------. 1 grid grid 516 Aug 19 13:47 ve1MDmAceJvnShfckohDCDFpABFKDmABFKDmpJrLDmABFKDmRMuuDm.diag -rw-rw-r--. 1 grid grid 107 Aug 19 11:52 wrapper_26015_x86_64-pc-linux-gnu -rw-rw-r--. 1 grid grid 27 Aug 19 13:47 wrapper_checkpoint.txt 2019-08-19 13:47:39,249: running start_atlas return value is 0 2019-08-19 13:47:39,249: Parent exit 0 2019-08-19 13:47:39,251: child process exit 0 13:47:39 (27942): run_atlas exited; CPU time 25130.790310 13:47:39 (27942): called boinc_finish(0) </stderr_txt> ]]>
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