Name | VKkLDmtrgJvnShfckohDCDFpABFKDmABFKDmMKvLDmABFKDmyGIA1m_0 |
Workunit | 1919132 |
Created | 18 Aug 2019, 20:22:20 UTC |
Sent | 19 Aug 2019, 12:48:02 UTC |
Report deadline | 26 Aug 2019, 12:48:02 UTC |
Received | 20 Aug 2019, 0:03:27 UTC |
Server state | Over |
Outcome | Success |
Client state | Done |
Exit status | 0 (0x00000000) |
Computer ID | 3911 |
Run time | 4 hours 25 min 11 sec |
CPU time | 16 hours 47 min 47 sec |
Validate state | Valid |
Credit | 469.94 |
Device peak FLOPS | 12.76 GFLOPS |
Application version | ATLAS Simulation v0.72 (native_mt) x86_64-pc-linux-gnu |
Peak working set size | 1.79 GB |
Peak swap size | 2.57 GB |
Peak disk usage | 726.25 MB |
<core_client_version>7.7.0</core_client_version> <![CDATA[ <stderr_txt> 20:37:53 (32222): wrapper (7.7.26015): starting 20:37:53 (32222): wrapper: running run_atlas (--nthreads 4) 2019-08-19 20:37:53,594: singularity image is /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 2019-08-19 20:37:53,594: sys.argv = ['run_atlas', '--nthreads', '4'] 2019-08-19 20:37:53,596: THREADS=4 2019-08-19 20:37:53,598: Checking for CVMFS 2019-08-19 20:37:55,079: CVMFS is installed 2019-08-19 20:37:55,083: OS:CentOS Linux release 7.6.1810 (Core) 2019-08-19 20:37:55,083: This is not SLC6, need to run with Singularity.... 2019-08-19 20:37:55,083: Checking Singularity... 2019-08-19 20:37:55,087: Singularity is not installed, using version from CVMFS 2019-08-19 20:37:55,087: Testing the function of Singularity... 2019-08-19 20:37:55,087: Checking singularity with cmd:/cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 hostname 2019-08-19 20:37:55,314: Singularity Works... 2019-08-19 20:37:55,314: copy /home/grid/slots/0/shared/ATLAS.root_0 2019-08-19 20:37:55,905: copy /home/grid/slots/0/shared/input.tar.gz 2019-08-19 20:37:55,907: copy /home/grid/slots/0/shared/RTE.tar.gz 2019-08-19 20:37:55,907: copy /home/grid/slots/0/shared/start_atlas.sh 2019-08-19 20:37:55,907: export ATHENA_PROC_NUMBER=4; 2019-08-19 20:37:55,932: start atlas job with PandaID=4452164432 2019-08-19 20:37:55,932: cmd = /cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec --pwd /home/grid/slots/0 -B /cvmfs,/home /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sh start_atlas.sh > runtime_log 2> runtime_log.err 2019-08-20 01:03:03,294: running cmd return value is 0 2019-08-20 01:03:03,297: Moving ./HITS.18722261._016108.pool.root.1 to shared/HITS.pool.root.1 2019-08-20 01:03:03,297: *****************The last 100 lines of the pilot log****************** 2019-08-20 01:03:03,305: 2019-08-19 23:02:41,290 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4452164432 2019-08-19 23:02:41,290 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18722261 2019-08-19 23:02:41,290 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none) 2019-08-19 23:02:41,290 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE 2019-08-19 23:02:41,290 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished 2019-08-19 23:02:41,290 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0 2019-08-19 23:02:41,290 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0 2019-08-19 23:02:41,290 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag: 2019-08-19 23:02:41,290 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0 2019-08-19 23:02:41,291 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK 2019-08-19 23:02:41,291 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 60671 s 2019-08-19 23:02:41,291 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 200 2019-08-19 23:02:41,291 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0 2019-08-19 23:02:41,291 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 6521 2019-08-19 23:02:41,291 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: 6521 2019-08-19 23:02:41,291 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 4 2019-08-19 23:02:41,291 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False 2019-08-19 23:02:41,291 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-08-19 23:02:41,291 | INFO | retrieve | pilot.util.auxiliary | make_job_report | 2019-08-19 23:02:41,291 | INFO | retrieve | pilot.control.job | has_job_completed | job 4452164432 has completed 2019-08-19 23:02:41,291 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called 2019-08-19 23:02:41,307 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /home/grid/slots/0/PanDA_Pilot-4452164432 2019-08-19 23:02:42,313 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [6521] 2019-08-19 23:02:42,313 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 6521 2019-08-19 23:02:42,313 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes 2019-08-19 23:02:43,318 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes 2019-08-19 23:02:43,319 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=6521 2019-08-19 23:02:43,414 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [6521] (in reverse order) 2019-08-19 23:02:43,456 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s) 2019-08-19 23:02:43,456 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs 2019-08-19 23:02:43,456 | INFO | retrieve | pilot.control.job | retrieve | ready for new job 2019-08-19 23:02:43,456 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging No handlers could be found for logger "pilot.util.mpi" 2019-08-19 23:02:43,966 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1 2019-08-19 23:02:49,233 | INFO | monitor | pilot.control.monitor | control | 15876 s have passed since pilot start 2019-08-19 23:02:53,993 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1 2019-08-19 23:02:53,994 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /home/grid/slots/0 2019-08-19 23:02:54,037 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (34573647872 B) 2019-08-19 23:02:54,037 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job 2019-08-19 23:02:54,037 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished 2019-08-19 23:02:54,075 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished 2019-08-19 23:02:54,087 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished 2019-08-19 23:02:54,220 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 14 threads 2019-08-19 23:02:54,221 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140407057438464)>, <ExcThread(job, started 140406841165568)>, <ExcThread(data, started 140406832772864)>, <ExcThread(validate_post, started 140406272538368)>, <ExcThread(job_monitor, started 140406280931072)>, <ExcThread(validate, started 140406824380160)>, <ExcThread(execute_payloads, started 140405760845568)>, <ExcThread(queue_monitoring, started 140406289323776)>, <ExcThread(create_data_payload, started 140406799202048)>, <ExcThread(monitor, started 140406306109184)>, <ExcThread(copytool_out, started 140406807594752)>, <ExcThread(queue_monitor, started 140406264145664)>, <ExcThread(copytool_in, started 140406255752960)>, <ExcThread(payload, started 140406815987456)>] 2019-08-19 23:02:54,249 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended 2019-08-19 23:02:54,312 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished 2019-08-19 23:02:54,316 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set 2019-08-19 23:02:54,316 | DEBUG | data | pilot.control.data | control | [data] control thread has finished 2019-08-19 23:02:54,481 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished 2019-08-19 23:02:54,522 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 10 threads 2019-08-19 23:02:54,523 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140407057438464)>, <ExcThread(job, started 140406841165568)>, <ExcThread(validate_post, started 140406272538368)>, <ExcThread(job_monitor, started 140406280931072)>, <ExcThread(validate, started 140406824380160)>, <ExcThread(execute_payloads, started 140405760845568)>, <ExcThread(queue_monitoring, started 140406289323776)>, <ExcThread(copytool_out, started 140406807594752)>, <ExcThread(queue_monitor, started 140406264145664)>, <ExcThread(payload, started 140406815987456)>] 2019-08-19 23:02:54,728 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set 2019-08-19 23:02:54,729 | DEBUG | job | pilot.control.job | control | [job] control thread has finished 2019-08-19 23:02:54,792 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished 2019-08-19 23:02:54,824 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 8 threads 2019-08-19 23:02:54,824 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140407057438464)>, <ExcThread(job_monitor, started 140406280931072)>, <ExcThread(validate, started 140406824380160)>, <ExcThread(execute_payloads, started 140405760845568)>, <ExcThread(queue_monitoring, started 140406289323776)>, <ExcThread(copytool_out, started 140406807594752)>, <ExcThread(queue_monitor, started 140406264145664)>, <ExcThread(payload, started 140406815987456)>] 2019-08-19 23:02:54,886 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished 2019-08-19 23:02:55,026 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 7 threads 2019-08-19 23:02:55,026 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140407057438464)>, <ExcThread(job_monitor, started 140406280931072)>, <ExcThread(validate, started 140406824380160)>, <ExcThread(queue_monitoring, started 140406289323776)>, <ExcThread(copytool_out, started 140406807594752)>, <ExcThread(queue_monitor, started 140406264145664)>, <ExcThread(payload, started 140406815987456)>] 2019-08-19 23:02:55,070 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished 2019-08-19 23:02:55,135 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set 2019-08-19 23:02:55,135 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished 2019-08-19 23:02:55,142 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 5 threads 2019-08-19 23:02:55,143 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140407057438464)>, <ExcThread(job_monitor, started 140406280931072)>, <ExcThread(queue_monitoring, started 140406289323776)>, <ExcThread(copytool_out, started 140406807594752)>, <ExcThread(queue_monitor, started 140406264145664)>] 2019-08-19 23:02:55,317 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration 2019-08-19 23:02:55,317 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished 2019-08-19 23:02:55,344 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 4 threads 2019-08-19 23:02:55,344 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140407057438464)>, <ExcThread(job_monitor, started 140406280931072)>, <ExcThread(queue_monitoring, started 140406289323776)>, <ExcThread(copytool_out, started 140406807594752)>] 2019-08-19 23:02:55,443 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration 2019-08-19 23:02:56,444 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished 2019-08-19 23:02:56,452 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 3 threads 2019-08-19 23:02:56,452 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140407057438464)>, <ExcThread(job_monitor, started 140406280931072)>, <ExcThread(queue_monitoring, started 140406289323776)>] 2019-08-19 23:02:57,380 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration 2019-08-19 23:03:00,381 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished 2019-08-19 23:03:00,480 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 2 threads 2019-08-19 23:03:00,480 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140407057438464)>, <ExcThread(job_monitor, started 140406280931072)>] 2019-08-19 23:03:02,811 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 61 s) 2019-08-19 23:03:02,812 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished 2019-08-19 23:03:02,897 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0) 2019-08-19 23:03:02,898 | INFO | MainThread | root | wrap_up | traces error code: 0 2019-08-19 23:03:02,898 | INFO | MainThread | root | wrap_up | pilot has finished 2019-08-19 23:03:03 UTC [wrapper] ==== pilot stdout END ==== 2019-08-19 23:03:03 UTC [wrapper] ==== wrapper stdout RESUME ==== 2019-08-19 23:03:03 UTC [wrapper] Pilot exit status: 0 2019-08-19 23:03:03 UTC [wrapper] STATUSCODE: 0 2019-08-19 23:03:03 UTC [wrapper] apfmon messages muted ---- find pandaID.out ---- total 44 -rw-------. 1 grid grid 11357 Jul 25 16:38 LICENSE drwx------. 14 grid grid 216 Aug 19 20:38 pilot -rwx------. 1 grid grid 20463 Jul 25 16:38 pilot.py -rw-------. 1 grid grid 8 Aug 7 13:02 PILOTVERSION -rw-------. 1 grid grid 2251 Jul 25 16:38 README.md -rw-------. 1 grid grid 221 Jul 25 16:38 TODO.md 2019-08-19 23:03:03 UTC [wrapper] Test setup, not cleaning 2019-08-19 23:03:03 UTC [wrapper] ==== wrapper stdout END ==== 2019-08-19 23:03:03 UTC [wrapper] ==== wrapper stderr END ==== 2019-08-19 23:03:03 UTC [wrapper] wrapper wrapperexiting ec=0, duration=15907 2019-08-19 23:03:03 UTC [wrapper] apfmon messages muted 2019-08-20 01:03:03,309: ***************diag file************ 2019-08-20 01:03:03,309: runtimeenvironments=APPS/HEP/ATLAS-SITE; Processors=1 WallTime=15906.91s KernelTime=431.54s UserTime=60467.22s CPUUsage=382% MaxResidentMemory=1945232kB AverageResidentMemory=0kB AverageTotalMemory=0kB AverageUnsharedMemory=0kB AverageUnsharedStack=0kB AverageSharedMemory=0kB PageSize=4096B MajorPageFaults=462084 MinorPageFaults=18936630 Swaps=0 ForcedSwitches=7136580 WaitSwitches=9865611 Inputs=111913864 Outputs=880856 SocketReceived=0 SocketSent=0 Signals=0 nodename=David_Cameron@dcameron04.cern.ch exitcode=0 2019-08-20 01:03:03,319: ******************************WorkDir*********************** 2019-08-20 01:03:03,319: total 274444 drwxrwx--x. 6 grid grid 4096 Aug 20 01:03 . drwxr-x--x. 3 grid grid 15 Aug 8 09:08 .. -rw-------. 1 grid grid 7442625 Aug 19 20:38 agis_ddmendpoints.json -rw-------. 1 grid grid 4371564 Aug 19 20:38 agis_schedconf.cvmfs.json drwx------. 2 grid grid 6 Aug 19 20:37 .alrb drwxr-xr-x. 3 grid grid 17 Aug 19 20:37 APPS -rw-------. 1 grid grid 538 Aug 19 20:37 .asetup -rw-------. 1 grid grid 826 Aug 19 20:38 .asetup.save -rw-rw-r--. 1 grid grid 0 Aug 19 20:37 boinc_lockfile -rw-rw-r--. 1 grid grid 8192 Aug 20 01:03 boinc_mmap_file -rw-rw-r--. 1 grid grid 537 Aug 20 00:56 boinc_task_state.xml -rw-rw-r--. 1 grid grid 266777204 Aug 19 20:37 EVNT.18605752._000313.pool.root.1 -rw-------. 1 grid grid 109995 Aug 20 01:02 heartbeat.json -rw-rw-r--. 1 grid grid 5866 Aug 19 20:37 init_data.xml -rw-rw-r--. 1 grid grid 261615 Aug 19 20:37 input.tar.gz -rw-rw-r--. 1 grid grid 112 Aug 19 20:37 job.xml -rw-------. 1 grid grid 785590 Aug 20 01:03 log.18722261._016108.job.log.1 -rw-------. 1 grid grid 857046 Aug 20 01:02 log.18722261._016108.job.log.tgz.1 -rw-------. 1 grid grid 391 Aug 20 01:03 output.list -rw-------. 1 grid grid 2921 Aug 18 22:22 pandaJobData.out drwx------. 3 grid grid 174 Aug 7 13:02 pilot2 -rw-r--r--. 1 grid grid 253018 Aug 18 21:33 pilot2.tar.gz -rw-------. 1 grid grid 10345 Aug 20 01:03 pilotlog.txt -rw-r--r--. 1 grid grid 4468 Aug 18 22:22 queuedata.json -rw-rw-r--. 1 grid grid 815 Aug 19 20:37 RTE.tar.gz -rwxr-xr-x. 1 grid grid 8466 Aug 19 20:37 run_atlas -rwx------. 1 grid grid 12641 Aug 18 22:22 runpilot2-wrapper.sh -rw-rw-r--. 1 grid grid 692 Aug 20 01:03 runtime_log -rw-rw-r--. 1 grid grid 6807 Aug 20 01:03 runtime_log.err drwxrwx--x. 2 grid grid 131 Aug 20 01:03 shared -rw-rw-r--. 1 grid grid 8688 Aug 19 20:37 start_atlas.sh -rw-rw-r--. 1 grid grid 18773 Aug 20 01:03 stderr.txt -rw-------. 1 grid grid 518 Aug 20 01:03 VKkLDmtrgJvnShfckohDCDFpABFKDmABFKDmMKvLDmABFKDmyGIA1m.diag -rw-rw-r--. 1 grid grid 107 Aug 19 20:37 wrapper_26015_x86_64-pc-linux-gnu -rw-rw-r--. 1 grid grid 28 Aug 20 01:03 wrapper_checkpoint.txt 2019-08-20 01:03:03,319: running start_atlas return value is 0 2019-08-20 01:03:03,319: Parent exit 0 2019-08-20 01:03:03,321: child process exit 0 01:03:03 (32222): run_atlas exited; CPU time 60467.673280 01:03:03 (32222): called boinc_finish(0) </stderr_txt> ]]>
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