Name | SElKDmYxEKvnShfckohDCDFpABFKDmABFKDmpxoMDmABFKDmDCt8Eo_0 |
Workunit | 1919660 |
Created | 20 Aug 2019, 8:46:45 UTC |
Sent | 20 Aug 2019, 16:57:13 UTC |
Report deadline | 27 Aug 2019, 16:57:13 UTC |
Received | 21 Aug 2019, 3:38:00 UTC |
Server state | Over |
Outcome | Success |
Client state | Done |
Exit status | 0 (0x00000000) |
Computer ID | 3911 |
Run time | 1 hours 41 min 7 sec |
CPU time | 6 hours 4 min 49 sec |
Validate state | Valid |
Credit | 179.20 |
Device peak FLOPS | 12.76 GFLOPS |
Application version | ATLAS Simulation v0.72 (native_mt) x86_64-pc-linux-gnu |
Peak working set size | 1.80 GB |
Peak swap size | 3.72 GB |
Peak disk usage | 715.08 MB |
<core_client_version>7.7.0</core_client_version> <![CDATA[ <stderr_txt> 02:56:35 (5315): wrapper (7.7.26015): starting 02:56:35 (5315): wrapper: running run_atlas (--nthreads 4) 2019-08-21 02:56:35,204: singularity image is /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 2019-08-21 02:56:35,204: sys.argv = ['run_atlas', '--nthreads', '4'] 2019-08-21 02:56:35,205: THREADS=4 2019-08-21 02:56:35,208: Checking for CVMFS 2019-08-21 02:56:36,544: CVMFS is installed 2019-08-21 02:56:36,548: OS:CentOS Linux release 7.6.1810 (Core) 2019-08-21 02:56:36,549: This is not SLC6, need to run with Singularity.... 2019-08-21 02:56:36,549: Checking Singularity... 2019-08-21 02:56:36,552: Singularity is not installed, using version from CVMFS 2019-08-21 02:56:36,552: Testing the function of Singularity... 2019-08-21 02:56:36,552: Checking singularity with cmd:/cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 hostname 2019-08-21 02:56:36,855: Singularity Works... 2019-08-21 02:56:36,855: copy /home/grid/slots/0/shared/ATLAS.root_0 2019-08-21 02:56:37,346: copy /home/grid/slots/0/shared/input.tar.gz 2019-08-21 02:56:37,347: copy /home/grid/slots/0/shared/RTE.tar.gz 2019-08-21 02:56:37,348: copy /home/grid/slots/0/shared/start_atlas.sh 2019-08-21 02:56:37,348: export ATHENA_PROC_NUMBER=4; 2019-08-21 02:56:37,368: start atlas job with PandaID=4453672493 2019-08-21 02:56:37,368: cmd = /cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec --pwd /home/grid/slots/0 -B /cvmfs,/home /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sh start_atlas.sh > runtime_log 2> runtime_log.err 2019-08-21 04:37:38,787: running cmd return value is 0 2019-08-21 04:37:38,791: Moving ./HITS.18722144._023072.pool.root.1 to shared/HITS.pool.root.1 2019-08-21 04:37:38,791: *****************The last 100 lines of the pilot log****************** 2019-08-21 04:37:38,799: 2019-08-21 02:37:11,992 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18722144 2019-08-21 02:37:11,992 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none) 2019-08-21 02:37:11,992 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE 2019-08-21 02:37:11,992 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished 2019-08-21 02:37:11,992 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0 2019-08-21 02:37:11,992 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0 2019-08-21 02:37:11,993 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag: 2019-08-21 02:37:11,993 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0 2019-08-21 02:37:11,993 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK 2019-08-21 02:37:11,993 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 21998 s 2019-08-21 02:37:11,993 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 200 2019-08-21 02:37:11,993 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0 2019-08-21 02:37:11,993 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 12102 2019-08-21 02:37:11,993 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: 12102 2019-08-21 02:37:11,993 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 4 2019-08-21 02:37:11,993 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False 2019-08-21 02:37:11,993 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-08-21 02:37:11,993 | INFO | retrieve | pilot.util.auxiliary | make_job_report | 2019-08-21 02:37:11,993 | INFO | retrieve | pilot.control.job | has_job_completed | job 4453672493 has completed 2019-08-21 02:37:11,993 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called 2019-08-21 02:37:12,003 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /home/grid/slots/0/PanDA_Pilot-4453672493 2019-08-21 02:37:13,008 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [12102] 2019-08-21 02:37:13,009 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 12102 2019-08-21 02:37:13,009 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes 2019-08-21 02:37:14,014 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes 2019-08-21 02:37:14,014 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=12102 2019-08-21 02:37:14,071 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [12102] (in reverse order) 2019-08-21 02:37:14,109 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s) 2019-08-21 02:37:14,109 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs 2019-08-21 02:37:14,109 | INFO | retrieve | pilot.control.job | retrieve | ready for new job 2019-08-21 02:37:14,109 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging No handlers could be found for logger "pilot.util.mpi" 2019-08-21 02:37:14,620 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1 2019-08-21 02:37:24,647 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1 2019-08-21 02:37:24,647 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /home/grid/slots/0 2019-08-21 02:37:24,687 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (34949038080 B) 2019-08-21 02:37:24,687 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job 2019-08-21 02:37:24,687 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished 2019-08-21 02:37:24,688 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration 2019-08-21 02:37:24,692 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended 2019-08-21 02:37:24,925 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 15 threads 2019-08-21 02:37:24,926 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished 2019-08-21 02:37:24,926 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139708651222784)>, <ExcThread(job, started 139708434949888)>, <ExcThread(job_monitor, started 139707878983424)>, <ExcThread(queue_monitoring, started 139708384593664)>, <ExcThread(payload, started 139708392986368)>, <ExcThread(execute_payloads, started 139707358897920)>, <ExcThread(copytool_in, started 139707895768832)>, <ExcThread(copytool_out, started 139708409771776)>, <ExcThread(validate_pre, started 139707870590720)>, <ExcThread(validate, started 139708418164480)>, <ExcThread(failed_post, started 139707367290624)>, <ExcThread(queue_monitor, started 139707862198016)>, <ExcThread(data, started 139708426557184)>, <ExcThread(create_data_payload, started 139708401379072)>, <ExcThread(validate_post, started 139707853805312)>] 2019-08-21 02:37:25,124 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished 2019-08-21 02:37:25,191 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished 2019-08-21 02:37:25,321 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set 2019-08-21 02:37:25,322 | DEBUG | data | pilot.control.data | control | [data] control thread has finished 2019-08-21 02:37:25,328 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 11 threads 2019-08-21 02:37:25,329 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139708651222784)>, <ExcThread(job, started 139708434949888)>, <ExcThread(job_monitor, started 139707878983424)>, <ExcThread(queue_monitoring, started 139708384593664)>, <ExcThread(payload, started 139708392986368)>, <ExcThread(copytool_out, started 139708409771776)>, <ExcThread(validate_pre, started 139707870590720)>, <ExcThread(validate, started 139708418164480)>, <ExcThread(queue_monitor, started 139707862198016)>, <ExcThread(create_data_payload, started 139708401379072)>, <ExcThread(validate_post, started 139707853805312)>] 2019-08-21 02:37:25,329 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set 2019-08-21 02:37:25,329 | DEBUG | job | pilot.control.job | control | [job] control thread has finished 2019-08-21 02:37:25,482 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished 2019-08-21 02:37:25,518 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished 2019-08-21 02:37:25,530 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 8 threads 2019-08-21 02:37:25,530 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139708651222784)>, <ExcThread(job_monitor, started 139707878983424)>, <ExcThread(queue_monitoring, started 139708384593664)>, <ExcThread(payload, started 139708392986368)>, <ExcThread(copytool_out, started 139708409771776)>, <ExcThread(validate_pre, started 139707870590720)>, <ExcThread(queue_monitor, started 139707862198016)>, <ExcThread(validate_post, started 139707853805312)>] 2019-08-21 02:37:25,602 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set 2019-08-21 02:37:25,602 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished 2019-08-21 02:37:25,631 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 7 threads 2019-08-21 02:37:25,631 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139708651222784)>, <ExcThread(job_monitor, started 139707878983424)>, <ExcThread(queue_monitoring, started 139708384593664)>, <ExcThread(copytool_out, started 139708409771776)>, <ExcThread(validate_pre, started 139707870590720)>, <ExcThread(queue_monitor, started 139707862198016)>, <ExcThread(validate_post, started 139707853805312)>] 2019-08-21 02:37:25,688 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished 2019-08-21 02:37:25,732 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 6 threads 2019-08-21 02:37:25,733 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139708651222784)>, <ExcThread(job_monitor, started 139707878983424)>, <ExcThread(queue_monitoring, started 139708384593664)>, <ExcThread(validate_pre, started 139707870590720)>, <ExcThread(queue_monitor, started 139707862198016)>, <ExcThread(validate_post, started 139707853805312)>] 2019-08-21 02:37:25,781 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished 2019-08-21 02:37:25,833 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 5 threads 2019-08-21 02:37:25,834 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139708651222784)>, <ExcThread(job_monitor, started 139707878983424)>, <ExcThread(queue_monitoring, started 139708384593664)>, <ExcThread(queue_monitor, started 139707862198016)>, <ExcThread(validate_post, started 139707853805312)>] 2019-08-21 02:37:25,891 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished 2019-08-21 02:37:25,934 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 4 threads 2019-08-21 02:37:25,935 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139708651222784)>, <ExcThread(job_monitor, started 139707878983424)>, <ExcThread(queue_monitoring, started 139708384593664)>, <ExcThread(queue_monitor, started 139707862198016)>] 2019-08-21 02:37:26,268 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration 2019-08-21 02:37:26,271 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration 2019-08-21 02:37:26,272 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished 2019-08-21 02:37:26,338 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 3 threads 2019-08-21 02:37:26,338 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139708651222784)>, <ExcThread(job_monitor, started 139707878983424)>, <ExcThread(queue_monitoring, started 139708384593664)>] 2019-08-21 02:37:29,269 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished 2019-08-21 02:37:29,359 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 2 threads 2019-08-21 02:37:29,359 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139708651222784)>, <ExcThread(job_monitor, started 139707878983424)>] 2019-08-21 02:37:38,244 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 62 s) 2019-08-21 02:37:38,244 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished 2019-08-21 02:37:38,332 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0) 2019-08-21 02:37:38,333 | INFO | MainThread | root | wrap_up | traces error code: 0 2019-08-21 02:37:38,333 | INFO | MainThread | root | wrap_up | pilot has finished 2019-08-21 02:37:38 UTC [wrapper] ==== pilot stdout END ==== 2019-08-21 02:37:38 UTC [wrapper] ==== wrapper stdout RESUME ==== 2019-08-21 02:37:38 UTC [wrapper] Pilot exit status: 0 2019-08-21 02:37:38 UTC [wrapper] STATUSCODE: 0 2019-08-21 02:37:38 UTC [wrapper] apfmon messages muted ---- find pandaID.out ---- total 48 -rw-------. 1 grid grid 11357 Jul 25 16:38 LICENSE drwx------. 14 grid grid 216 Aug 21 02:56 pilot -rwx------. 1 grid grid 20628 Aug 19 14:00 pilot.py -rw-------. 1 grid grid 9 Aug 19 14:00 PILOTVERSION -rw-------. 1 grid grid 2251 Jul 25 16:38 README.md -rw-------. 1 grid grid 221 Jul 25 16:38 TODO.md 2019-08-21 02:37:38 UTC [wrapper] Test setup, not cleaning 2019-08-21 02:37:38 UTC [wrapper] ==== wrapper stdout END ==== 2019-08-21 02:37:38 UTC [wrapper] ==== wrapper stderr END ==== 2019-08-21 02:37:38 UTC [wrapper] wrapper wrapperexiting ec=0, duration=6061 2019-08-21 02:37:38 UTC [wrapper] apfmon messages muted 2019-08-21 04:37:38,803: ***************diag file************ 2019-08-21 04:37:38,803: runtimeenvironments=APPS/HEP/ATLAS-SITE; Processors=1 WallTime=6061.07s KernelTime=209.73s UserTime=21889.47s CPUUsage=364% MaxResidentMemory=1945176kB AverageResidentMemory=0kB AverageTotalMemory=0kB AverageUnsharedMemory=0kB AverageUnsharedStack=0kB AverageSharedMemory=0kB PageSize=4096B MajorPageFaults=274893 MinorPageFaults=12881595 Swaps=0 ForcedSwitches=2584611 WaitSwitches=5181193 Inputs=66848176 Outputs=552904 SocketReceived=0 SocketSent=0 Signals=0 nodename=David_Cameron@dcameron04.cern.ch exitcode=0 2019-08-21 04:37:38,813: ******************************WorkDir*********************** 2019-08-21 04:37:38,813: total 247928 drwxrwx--x. 6 grid grid 4096 Aug 21 04:37 . drwxr-x--x. 3 grid grid 15 Aug 8 09:08 .. -rw-------. 1 grid grid 7474631 Aug 21 02:56 agis_ddmendpoints.json -rw-------. 1 grid grid 4339663 Aug 21 02:56 agis_schedconf.cvmfs.json drwx------. 2 grid grid 6 Aug 21 02:56 .alrb drwxr-xr-x. 3 grid grid 17 Aug 21 02:56 APPS -rw-------. 1 grid grid 538 Aug 21 02:56 .asetup -rw-------. 1 grid grid 826 Aug 21 02:57 .asetup.save -rw-rw-r--. 1 grid grid 0 Aug 21 02:56 boinc_lockfile -rw-rw-r--. 1 grid grid 8192 Aug 21 04:37 boinc_mmap_file -rw-rw-r--. 1 grid grid 536 Aug 21 04:32 boinc_task_state.xml -rw-rw-r--. 1 grid grid 240078967 Aug 21 02:56 EVNT.18605742._000449.pool.root.1 -rw-------. 1 grid grid 68165 Aug 21 04:37 heartbeat.json -rw-rw-r--. 1 grid grid 5866 Aug 21 02:56 init_data.xml -rw-rw-r--. 1 grid grid 263685 Aug 21 02:56 input.tar.gz -rw-rw-r--. 1 grid grid 112 Aug 21 02:56 job.xml -rw-------. 1 grid grid 398198 Aug 21 04:37 log.18722144._023072.job.log.1 -rw-------. 1 grid grid 824762 Aug 21 04:37 log.18722144._023072.job.log.tgz.1 -rw-------. 1 grid grid 391 Aug 21 04:37 output.list -rw-------. 1 grid grid 2920 Aug 20 10:46 pandaJobData.out drwx------. 3 grid grid 174 Aug 19 14:00 pilot2 -rw-r--r--. 1 grid grid 255033 Aug 20 10:40 pilot2.tar.gz -rw-------. 1 grid grid 10912 Aug 21 04:37 pilotlog.txt -rw-r--r--. 1 grid grid 4468 Aug 20 10:45 queuedata.json -rw-rw-r--. 1 grid grid 815 Aug 21 02:56 RTE.tar.gz -rwxr-xr-x. 1 grid grid 8466 Aug 21 02:56 run_atlas -rwx------. 1 grid grid 12641 Aug 20 10:46 runpilot2-wrapper.sh -rw-rw-r--. 1 grid grid 692 Aug 21 04:37 runtime_log -rw-rw-r--. 1 grid grid 6807 Aug 21 04:37 runtime_log.err -rw-------. 1 grid grid 516 Aug 21 04:37 SElKDmYxEKvnShfckohDCDFpABFKDmABFKDmpxoMDmABFKDmDCt8Eo.diag drwxrwx--x. 2 grid grid 131 Aug 21 04:37 shared -rw-rw-r--. 1 grid grid 8688 Aug 21 02:56 start_atlas.sh -rw-rw-r--. 1 grid grid 19194 Aug 21 04:37 stderr.txt -rw-rw-r--. 1 grid grid 107 Aug 21 02:56 wrapper_26015_x86_64-pc-linux-gnu -rw-rw-r--. 1 grid grid 27 Aug 21 04:37 wrapper_checkpoint.txt 2019-08-21 04:37:38,813: running start_atlas return value is 0 2019-08-21 04:37:38,813: Parent exit 0 2019-08-21 04:37:38,815: child process exit 0 04:37:39 (5315): run_atlas exited; CPU time 21889.852621 04:37:39 (5315): called boinc_finish(0) </stderr_txt> ]]>
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