Name | twuMDmRCrIvnShfckohDCDFpABFKDmABFKDm4yXKDmABFKDmmAgrZm_1 |
Workunit | 1918156 |
Created | 20 Aug 2019, 18:26:55 UTC |
Sent | 21 Aug 2019, 1:56:54 UTC |
Report deadline | 28 Aug 2019, 1:56:54 UTC |
Received | 21 Aug 2019, 11:58:01 UTC |
Server state | Over |
Outcome | Success |
Client state | Done |
Exit status | 0 (0x00000000) |
Computer ID | 3911 |
Run time | 1 hours 44 min 34 sec |
CPU time | 6 hours 17 min 32 sec |
Validate state | Valid |
Credit | 185.31 |
Device peak FLOPS | 12.76 GFLOPS |
Application version | ATLAS Simulation v0.72 (native_mt) x86_64-pc-linux-gnu |
Peak working set size | 1.81 GB |
Peak swap size | 2.55 GB |
Peak disk usage | 705.41 MB |
<core_client_version>7.7.0</core_client_version> <![CDATA[ <stderr_txt> 11:13:08 (25176): wrapper (7.7.26015): starting 11:13:08 (25176): wrapper: running run_atlas (--nthreads 4) 2019-08-21 11:13:08,546: singularity image is /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 2019-08-21 11:13:08,546: sys.argv = ['run_atlas', '--nthreads', '4'] 2019-08-21 11:13:08,548: THREADS=4 2019-08-21 11:13:08,549: Checking for CVMFS 2019-08-21 11:13:10,430: CVMFS is installed 2019-08-21 11:13:10,435: OS:CentOS Linux release 7.6.1810 (Core) 2019-08-21 11:13:10,435: This is not SLC6, need to run with Singularity.... 2019-08-21 11:13:10,435: Checking Singularity... 2019-08-21 11:13:10,438: Singularity is not installed, using version from CVMFS 2019-08-21 11:13:10,438: Testing the function of Singularity... 2019-08-21 11:13:10,439: Checking singularity with cmd:/cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 hostname 2019-08-21 11:13:10,699: Singularity Works... 2019-08-21 11:13:10,699: copy /home/grid/slots/0/shared/ATLAS.root_0 2019-08-21 11:13:11,219: copy /home/grid/slots/0/shared/input.tar.gz 2019-08-21 11:13:11,220: copy /home/grid/slots/0/shared/RTE.tar.gz 2019-08-21 11:13:11,220: copy /home/grid/slots/0/shared/start_atlas.sh 2019-08-21 11:13:11,221: export ATHENA_PROC_NUMBER=4; 2019-08-21 11:13:11,246: start atlas job with PandaID=4448201314 2019-08-21 11:13:11,246: cmd = /cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec --pwd /home/grid/slots/0 -B /cvmfs,/home /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sh start_atlas.sh > runtime_log 2> runtime_log.err 2019-08-21 12:57:41,712: running cmd return value is 0 2019-08-21 12:57:41,715: Moving ./HITS.18722144._014897.pool.root.1 to shared/HITS.pool.root.1 2019-08-21 12:57:41,715: *****************The last 100 lines of the pilot log****************** 2019-08-21 12:57:41,722: 2019-08-21 10:57:01,469 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18722144 2019-08-21 10:57:01,469 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none) 2019-08-21 10:57:01,469 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE 2019-08-21 10:57:01,469 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished 2019-08-21 10:57:01,469 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0 2019-08-21 10:57:01,469 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0 2019-08-21 10:57:01,469 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag: 2019-08-21 10:57:01,469 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0 2019-08-21 10:57:01,469 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK 2019-08-21 10:57:01,469 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 22743 s 2019-08-21 10:57:01,470 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 200 2019-08-21 10:57:01,470 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0 2019-08-21 10:57:01,470 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 31950 2019-08-21 10:57:01,470 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: 31950 2019-08-21 10:57:01,470 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 4 2019-08-21 10:57:01,470 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False 2019-08-21 10:57:01,470 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-08-21 10:57:01,470 | INFO | retrieve | pilot.util.auxiliary | make_job_report | 2019-08-21 10:57:01,470 | INFO | retrieve | pilot.control.job | has_job_completed | job 4448201314 has completed 2019-08-21 10:57:01,470 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called 2019-08-21 10:57:01,479 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /home/grid/slots/0/PanDA_Pilot-4448201314 2019-08-21 10:57:02,484 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [31950] 2019-08-21 10:57:02,484 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 31950 2019-08-21 10:57:02,485 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes 2019-08-21 10:57:03,485 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes 2019-08-21 10:57:03,485 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=31950 2019-08-21 10:57:03,640 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [31950] (in reverse order) 2019-08-21 10:57:03,690 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s) 2019-08-21 10:57:03,690 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs 2019-08-21 10:57:03,690 | INFO | retrieve | pilot.control.job | retrieve | ready for new job 2019-08-21 10:57:03,690 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging No handlers could be found for logger "pilot.util.mpi" 2019-08-21 10:57:04,201 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1 2019-08-21 10:57:14,252 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1 2019-08-21 10:57:14,252 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /home/grid/slots/0 2019-08-21 10:57:14,327 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (36479959040 B) 2019-08-21 10:57:14,327 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job 2019-08-21 10:57:14,328 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished 2019-08-21 10:57:14,338 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration 2019-08-21 10:57:14,340 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended 2019-08-21 10:57:14,341 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 15 threads 2019-08-21 10:57:14,341 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139765175662336)>, <ExcThread(job, started 139764959389440)>, <ExcThread(job_monitor, started 139764325930752)>, <ExcThread(copytool_in, started 139764317538048)>, <ExcThread(create_data_payload, started 139764854408960)>, <ExcThread(validate_post, started 139764309145344)>, <ExcThread(execute_payloads, started 139763805845248)>, <ExcThread(payload, started 139764862801664)>, <ExcThread(failed_post, started 139764300752640)>, <ExcThread(data, started 139764871194368)>, <ExcThread(queue_monitor, started 139764292359936)>, <ExcThread(validate, started 139764879587072)>, <ExcThread(queue_monitoring, started 139764837623552)>, <ExcThread(validate_pre, started 139764829230848)>, <ExcThread(copytool_out, started 139764846016256)>] 2019-08-21 10:57:14,426 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished 2019-08-21 10:57:14,536 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration 2019-08-21 10:57:14,598 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished 2019-08-21 10:57:14,674 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set 2019-08-21 10:57:14,675 | DEBUG | data | pilot.control.data | control | [data] control thread has finished 2019-08-21 10:57:14,743 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 12 threads 2019-08-21 10:57:14,744 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139765175662336)>, <ExcThread(job, started 139764959389440)>, <ExcThread(job_monitor, started 139764325930752)>, <ExcThread(create_data_payload, started 139764854408960)>, <ExcThread(validate_post, started 139764309145344)>, <ExcThread(execute_payloads, started 139763805845248)>, <ExcThread(payload, started 139764862801664)>, <ExcThread(failed_post, started 139764300752640)>, <ExcThread(queue_monitor, started 139764292359936)>, <ExcThread(validate, started 139764879587072)>, <ExcThread(queue_monitoring, started 139764837623552)>, <ExcThread(copytool_out, started 139764846016256)>] 2019-08-21 10:57:15,089 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished 2019-08-21 10:57:15,333 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set 2019-08-21 10:57:15,333 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set 2019-08-21 10:57:15,334 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished 2019-08-21 10:57:15,334 | DEBUG | job | pilot.control.job | control | [job] control thread has finished 2019-08-21 10:57:15,348 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 9 threads 2019-08-21 10:57:15,348 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139765175662336)>, <ExcThread(job_monitor, started 139764325930752)>, <ExcThread(create_data_payload, started 139764854408960)>, <ExcThread(validate_post, started 139764309145344)>, <ExcThread(execute_payloads, started 139763805845248)>, <ExcThread(failed_post, started 139764300752640)>, <ExcThread(queue_monitor, started 139764292359936)>, <ExcThread(queue_monitoring, started 139764837623552)>, <ExcThread(copytool_out, started 139764846016256)>] 2019-08-21 10:57:15,537 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished 2019-08-21 10:57:15,550 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 8 threads 2019-08-21 10:57:15,550 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139765175662336)>, <ExcThread(job_monitor, started 139764325930752)>, <ExcThread(create_data_payload, started 139764854408960)>, <ExcThread(validate_post, started 139764309145344)>, <ExcThread(execute_payloads, started 139763805845248)>, <ExcThread(failed_post, started 139764300752640)>, <ExcThread(queue_monitor, started 139764292359936)>, <ExcThread(queue_monitoring, started 139764837623552)>] 2019-08-21 10:57:15,632 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished 2019-08-21 10:57:15,651 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 7 threads 2019-08-21 10:57:15,652 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139765175662336)>, <ExcThread(job_monitor, started 139764325930752)>, <ExcThread(validate_post, started 139764309145344)>, <ExcThread(execute_payloads, started 139763805845248)>, <ExcThread(failed_post, started 139764300752640)>, <ExcThread(queue_monitor, started 139764292359936)>, <ExcThread(queue_monitoring, started 139764837623552)>] 2019-08-21 10:57:15,695 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished 2019-08-21 10:57:15,753 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 6 threads 2019-08-21 10:57:15,753 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139765175662336)>, <ExcThread(job_monitor, started 139764325930752)>, <ExcThread(execute_payloads, started 139763805845248)>, <ExcThread(failed_post, started 139764300752640)>, <ExcThread(queue_monitor, started 139764292359936)>, <ExcThread(queue_monitoring, started 139764837623552)>] 2019-08-21 10:57:15,795 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished 2019-08-21 10:57:15,801 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished 2019-08-21 10:57:15,854 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 4 threads 2019-08-21 10:57:15,854 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139765175662336)>, <ExcThread(job_monitor, started 139764325930752)>, <ExcThread(queue_monitor, started 139764292359936)>, <ExcThread(queue_monitoring, started 139764837623552)>] 2019-08-21 10:57:15,978 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration 2019-08-21 10:57:15,978 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished 2019-08-21 10:57:16,055 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 3 threads 2019-08-21 10:57:16,056 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139765175662336)>, <ExcThread(job_monitor, started 139764325930752)>, <ExcThread(queue_monitoring, started 139764837623552)>] 2019-08-21 10:57:17,350 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished 2019-08-21 10:57:17,367 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 2 threads 2019-08-21 10:57:17,368 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139765175662336)>, <ExcThread(job_monitor, started 139764325930752)>] 2019-08-21 10:57:41,252 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 62 s) 2019-08-21 10:57:41,252 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished 2019-08-21 10:57:41,269 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0) 2019-08-21 10:57:41,269 | INFO | MainThread | root | wrap_up | traces error code: 0 2019-08-21 10:57:41,269 | INFO | MainThread | root | wrap_up | pilot has finished 2019-08-21 10:57:41 UTC [wrapper] ==== pilot stdout END ==== 2019-08-21 10:57:41 UTC [wrapper] ==== wrapper stdout RESUME ==== 2019-08-21 10:57:41 UTC [wrapper] Pilot exit status: 0 2019-08-21 10:57:41 UTC [wrapper] STATUSCODE: 0 2019-08-21 10:57:41 UTC [wrapper] apfmon messages muted ---- find pandaID.out ---- total 44 -rw-------. 1 grid grid 11357 Jul 25 16:38 LICENSE drwx------. 14 grid grid 216 Aug 21 11:13 pilot -rwx------. 1 grid grid 20463 Jul 25 16:38 pilot.py -rw-------. 1 grid grid 8 Aug 7 13:02 PILOTVERSION -rw-------. 1 grid grid 2251 Jul 25 16:38 README.md -rw-------. 1 grid grid 221 Jul 25 16:38 TODO.md 2019-08-21 10:57:41 UTC [wrapper] Test setup, not cleaning 2019-08-21 10:57:41 UTC [wrapper] ==== wrapper stdout END ==== 2019-08-21 10:57:41 UTC [wrapper] ==== wrapper stderr END ==== 2019-08-21 10:57:41 UTC [wrapper] wrapper wrapperexiting ec=0, duration=6270 2019-08-21 10:57:41 UTC [wrapper] apfmon messages muted 2019-08-21 12:57:41,726: ***************diag file************ 2019-08-21 12:57:41,726: runtimeenvironments=APPS/HEP/ATLAS-SITE; Processors=1 WallTime=6270.07s KernelTime=208.98s UserTime=22651.86s CPUUsage=364% MaxResidentMemory=1944800kB AverageResidentMemory=0kB AverageTotalMemory=0kB AverageUnsharedMemory=0kB AverageUnsharedStack=0kB AverageSharedMemory=0kB PageSize=4096B MajorPageFaults=274433 MinorPageFaults=12893049 Swaps=0 ForcedSwitches=2655443 WaitSwitches=5507659 Inputs=66798976 Outputs=540488 SocketReceived=0 SocketSent=0 Signals=0 nodename=David_Cameron@dcameron04.cern.ch exitcode=0 2019-08-21 12:57:41,735: ******************************WorkDir*********************** 2019-08-21 12:57:41,735: total 246136 drwxrwx--x. 6 grid grid 4096 Aug 21 12:57 . drwxr-x--x. 3 grid grid 15 Aug 8 09:08 .. -rw-------. 1 grid grid 7476361 Aug 21 11:13 agis_ddmendpoints.json -rw-------. 1 grid grid 4339400 Aug 21 11:13 agis_schedconf.cvmfs.json drwx------. 2 grid grid 6 Aug 21 11:13 .alrb drwxr-xr-x. 3 grid grid 17 Aug 21 11:13 APPS -rw-------. 1 grid grid 538 Aug 21 11:13 .asetup -rw-------. 1 grid grid 826 Aug 21 11:14 .asetup.save -rw-rw-r--. 1 grid grid 0 Aug 21 11:13 boinc_lockfile -rw-rw-r--. 1 grid grid 8192 Aug 21 12:57 boinc_mmap_file -rw-rw-r--. 1 grid grid 536 Aug 21 12:52 boinc_task_state.xml -rw-rw-r--. 1 grid grid 238246850 Aug 21 11:13 EVNT.18605742._000286.pool.root.1 -rw-------. 1 grid grid 67430 Aug 21 12:57 heartbeat.json -rw-rw-r--. 1 grid grid 5866 Aug 21 11:13 init_data.xml -rw-rw-r--. 1 grid grid 261611 Aug 21 11:13 input.tar.gz -rw-rw-r--. 1 grid grid 112 Aug 21 11:13 job.xml -rw-------. 1 grid grid 408458 Aug 21 12:57 log.18722144._014897.job.log.1 -rw-------. 1 grid grid 820902 Aug 21 12:56 log.18722144._014897.job.log.tgz.1 -rw-------. 1 grid grid 391 Aug 21 12:57 output.list -rw-------. 1 grid grid 2922 Aug 16 15:11 pandaJobData.out drwx------. 3 grid grid 174 Aug 7 13:02 pilot2 -rw-r--r--. 1 grid grid 253018 Aug 16 14:25 pilot2.tar.gz -rw-------. 1 grid grid 11205 Aug 21 12:57 pilotlog.txt -rw-r--r--. 1 grid grid 4468 Aug 16 15:11 queuedata.json -rw-rw-r--. 1 grid grid 815 Aug 21 11:13 RTE.tar.gz -rwxr-xr-x. 1 grid grid 8466 Aug 21 11:13 run_atlas -rwx------. 1 grid grid 12641 Aug 16 15:11 runpilot2-wrapper.sh -rw-rw-r--. 1 grid grid 692 Aug 21 12:57 runtime_log -rw-rw-r--. 1 grid grid 6807 Aug 21 12:57 runtime_log.err drwxrwx--x. 2 grid grid 131 Aug 21 12:57 shared -rw-rw-r--. 1 grid grid 8688 Aug 21 11:13 start_atlas.sh -rw-rw-r--. 1 grid grid 19489 Aug 21 12:57 stderr.txt -rw-------. 1 grid grid 516 Aug 21 12:57 twuMDmRCrIvnShfckohDCDFpABFKDmABFKDm4yXKDmABFKDmmAgrZm.diag -rw-rw-r--. 1 grid grid 107 Aug 21 11:13 wrapper_26015_x86_64-pc-linux-gnu -rw-rw-r--. 1 grid grid 27 Aug 21 12:57 wrapper_checkpoint.txt 2019-08-21 12:57:41,735: running start_atlas return value is 0 2019-08-21 12:57:41,735: Parent exit 0 2019-08-21 12:57:41,737: child process exit 0 12:57:41 (25176): run_atlas exited; CPU time 22652.280637 12:57:41 (25176): called boinc_finish(0) </stderr_txt> ]]>
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