Name | fl0NDmT1UKvnShfckohDCDFpABFKDmABFKDmniFNDmABFKDmNiliEm_0 |
Workunit | 1919972 |
Created | 21 Aug 2019, 1:55:29 UTC |
Sent | 21 Aug 2019, 16:00:45 UTC |
Report deadline | 28 Aug 2019, 16:00:45 UTC |
Received | 22 Aug 2019, 3:48:17 UTC |
Server state | Over |
Outcome | Success |
Client state | Done |
Exit status | 0 (0x00000000) |
Computer ID | 3911 |
Run time | 3 hours 51 min 54 sec |
CPU time | 14 hours 34 min 51 sec |
Validate state | Valid |
Credit | 410.95 |
Device peak FLOPS | 12.76 GFLOPS |
Application version | ATLAS Simulation v0.72 (native_mt) x86_64-pc-linux-gnu |
Peak working set size | 1.79 GB |
Peak swap size | 2.57 GB |
Peak disk usage | 723.04 MB |
<core_client_version>7.7.0</core_client_version> <![CDATA[ <stderr_txt> 00:56:00 (416): wrapper (7.7.26015): starting 00:56:00 (416): wrapper: running run_atlas (--nthreads 4) 2019-08-22 00:56:00,789: singularity image is /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 2019-08-22 00:56:00,789: sys.argv = ['run_atlas', '--nthreads', '4'] 2019-08-22 00:56:00,790: THREADS=4 2019-08-22 00:56:00,792: Checking for CVMFS 2019-08-22 00:56:02,401: CVMFS is installed 2019-08-22 00:56:02,406: OS:CentOS Linux release 7.6.1810 (Core) 2019-08-22 00:56:02,406: This is not SLC6, need to run with Singularity.... 2019-08-22 00:56:02,406: Checking Singularity... 2019-08-22 00:56:02,409: Singularity is not installed, using version from CVMFS 2019-08-22 00:56:02,409: Testing the function of Singularity... 2019-08-22 00:56:02,409: Checking singularity with cmd:/cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 hostname 2019-08-22 00:56:02,710: Singularity Works... 2019-08-22 00:56:02,711: copy /home/grid/slots/0/shared/ATLAS.root_0 2019-08-22 00:56:03,315: copy /home/grid/slots/0/shared/input.tar.gz 2019-08-22 00:56:03,317: copy /home/grid/slots/0/shared/RTE.tar.gz 2019-08-22 00:56:03,317: copy /home/grid/slots/0/shared/start_atlas.sh 2019-08-22 00:56:03,317: export ATHENA_PROC_NUMBER=4; 2019-08-22 00:56:03,345: start atlas job with PandaID=4454254381 2019-08-22 00:56:03,346: cmd = /cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec --pwd /home/grid/slots/0 -B /cvmfs,/home /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sh start_atlas.sh > runtime_log 2> runtime_log.err 2019-08-22 04:47:53,174: running cmd return value is 0 2019-08-22 04:47:53,177: Moving ./HITS.18722261._017964.pool.root.1 to shared/HITS.pool.root.1 2019-08-22 04:47:53,177: *****************The last 100 lines of the pilot log****************** 2019-08-22 04:47:53,189: 2019-08-22 02:47:11,570 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0 2019-08-22 02:47:11,570 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0 2019-08-22 02:47:11,570 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag: 2019-08-22 02:47:11,570 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0 2019-08-22 02:47:11,570 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK 2019-08-22 02:47:11,570 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 52713 s 2019-08-22 02:47:11,570 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 200 2019-08-22 02:47:11,570 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0 2019-08-22 02:47:11,570 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 7277 2019-08-22 02:47:11,570 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: 7277 2019-08-22 02:47:11,570 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 4 2019-08-22 02:47:11,570 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False 2019-08-22 02:47:11,570 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-08-22 02:47:11,571 | INFO | retrieve | pilot.util.auxiliary | make_job_report | 2019-08-22 02:47:11,571 | INFO | retrieve | pilot.control.job | has_job_completed | job 4454254381 has completed 2019-08-22 02:47:11,571 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called 2019-08-22 02:47:11,582 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /home/grid/slots/0/PanDA_Pilot-4454254381 2019-08-22 02:47:12,585 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [7277] 2019-08-22 02:47:12,585 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 7277 2019-08-22 02:47:12,585 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes 2019-08-22 02:47:13,590 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes 2019-08-22 02:47:13,591 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=7277 2019-08-22 02:47:13,657 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [7277] (in reverse order) 2019-08-22 02:47:13,706 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s) 2019-08-22 02:47:13,707 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs 2019-08-22 02:47:13,707 | INFO | retrieve | pilot.control.job | retrieve | ready for new job 2019-08-22 02:47:13,707 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging No handlers could be found for logger "pilot.util.mpi" 2019-08-22 02:47:14,218 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1 2019-08-22 02:47:24,255 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1 2019-08-22 02:47:24,256 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /home/grid/slots/0 2019-08-22 02:47:24,292 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (35290873856 B) 2019-08-22 02:47:24,292 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job 2019-08-22 02:47:24,292 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished 2019-08-22 02:47:24,299 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration 2019-08-22 02:47:24,313 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 16 threads 2019-08-22 02:47:24,313 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139864416732928)>, <ExcThread(job, started 139864200460032)>, <ExcThread(validate_pre, started 139863663834880)>, <ExcThread(copytool_out, started 139864158496512)>, <ExcThread(monitor, started 139864150103808)>, <ExcThread(copytool_in, started 139863118571264)>, <ExcThread(create_data_payload, started 139864166889216)>, <ExcThread(job_monitor, started 139863638656768)>, <ExcThread(failed_post, started 139863630264064)>, <ExcThread(payload, started 139864175281920)>, <ExcThread(validate, started 139864192067328)>, <ExcThread(queue_monitor, started 139863126963968)>, <ExcThread(validate_post, started 139863647049472)>, <ExcThread(execute_payloads, started 139863621871360)>, <ExcThread(data, started 139864183674624)>, <ExcThread(queue_monitoring, started 139863613478656)>] 2019-08-22 02:47:24,317 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended 2019-08-22 02:47:24,404 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set 2019-08-22 02:47:24,404 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished 2019-08-22 02:47:24,479 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished 2019-08-22 02:47:24,587 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished 2019-08-22 02:47:24,615 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 12 threads 2019-08-22 02:47:24,615 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139864416732928)>, <ExcThread(job, started 139864200460032)>, <ExcThread(validate_pre, started 139863663834880)>, <ExcThread(copytool_out, started 139864158496512)>, <ExcThread(copytool_in, started 139863118571264)>, <ExcThread(job_monitor, started 139863638656768)>, <ExcThread(validate, started 139864192067328)>, <ExcThread(queue_monitor, started 139863126963968)>, <ExcThread(validate_post, started 139863647049472)>, <ExcThread(execute_payloads, started 139863621871360)>, <ExcThread(data, started 139864183674624)>, <ExcThread(queue_monitoring, started 139863613478656)>] 2019-08-22 02:47:24,700 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set 2019-08-22 02:47:24,700 | DEBUG | job | pilot.control.job | control | [job] control thread has finished 2019-08-22 02:47:24,726 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished 2019-08-22 02:47:24,816 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 10 threads 2019-08-22 02:47:24,816 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139864416732928)>, <ExcThread(validate_pre, started 139863663834880)>, <ExcThread(copytool_out, started 139864158496512)>, <ExcThread(copytool_in, started 139863118571264)>, <ExcThread(job_monitor, started 139863638656768)>, <ExcThread(validate, started 139864192067328)>, <ExcThread(queue_monitor, started 139863126963968)>, <ExcThread(validate_post, started 139863647049472)>, <ExcThread(data, started 139864183674624)>, <ExcThread(queue_monitoring, started 139863613478656)>] 2019-08-22 02:47:24,859 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set 2019-08-22 02:47:24,859 | DEBUG | data | pilot.control.data | control | [data] control thread has finished 2019-08-22 02:47:24,917 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 9 threads 2019-08-22 02:47:24,918 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139864416732928)>, <ExcThread(validate_pre, started 139863663834880)>, <ExcThread(copytool_out, started 139864158496512)>, <ExcThread(copytool_in, started 139863118571264)>, <ExcThread(job_monitor, started 139863638656768)>, <ExcThread(validate, started 139864192067328)>, <ExcThread(queue_monitor, started 139863126963968)>, <ExcThread(validate_post, started 139863647049472)>, <ExcThread(queue_monitoring, started 139863613478656)>] 2019-08-22 02:47:24,982 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished 2019-08-22 02:47:25,018 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 8 threads 2019-08-22 02:47:25,019 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139864416732928)>, <ExcThread(validate_pre, started 139863663834880)>, <ExcThread(copytool_out, started 139864158496512)>, <ExcThread(copytool_in, started 139863118571264)>, <ExcThread(job_monitor, started 139863638656768)>, <ExcThread(queue_monitor, started 139863126963968)>, <ExcThread(validate_post, started 139863647049472)>, <ExcThread(queue_monitoring, started 139863613478656)>] 2019-08-22 02:47:25,121 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished 2019-08-22 02:47:25,220 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 7 threads 2019-08-22 02:47:25,220 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139864416732928)>, <ExcThread(validate_pre, started 139863663834880)>, <ExcThread(copytool_out, started 139864158496512)>, <ExcThread(job_monitor, started 139863638656768)>, <ExcThread(queue_monitor, started 139863126963968)>, <ExcThread(validate_post, started 139863647049472)>, <ExcThread(queue_monitoring, started 139863613478656)>] 2019-08-22 02:47:25,299 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished 2019-08-22 02:47:25,321 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 6 threads 2019-08-22 02:47:25,321 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139864416732928)>, <ExcThread(validate_pre, started 139863663834880)>, <ExcThread(job_monitor, started 139863638656768)>, <ExcThread(queue_monitor, started 139863126963968)>, <ExcThread(validate_post, started 139863647049472)>, <ExcThread(queue_monitoring, started 139863613478656)>] 2019-08-22 02:47:25,473 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished 2019-08-22 02:47:25,523 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 5 threads 2019-08-22 02:47:25,523 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139864416732928)>, <ExcThread(validate_pre, started 139863663834880)>, <ExcThread(job_monitor, started 139863638656768)>, <ExcThread(queue_monitor, started 139863126963968)>, <ExcThread(queue_monitoring, started 139863613478656)>] 2019-08-22 02:47:25,602 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished 2019-08-22 02:47:25,624 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 4 threads 2019-08-22 02:47:25,624 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139864416732928)>, <ExcThread(job_monitor, started 139863638656768)>, <ExcThread(queue_monitor, started 139863126963968)>, <ExcThread(queue_monitoring, started 139863613478656)>] 2019-08-22 02:47:26,079 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration 2019-08-22 02:47:26,080 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished 2019-08-22 02:47:26,088 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration 2019-08-22 02:47:26,128 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 3 threads 2019-08-22 02:47:26,128 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139864416732928)>, <ExcThread(job_monitor, started 139863638656768)>, <ExcThread(queue_monitoring, started 139863613478656)>] 2019-08-22 02:47:29,090 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished 2019-08-22 02:47:29,150 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 2 threads 2019-08-22 02:47:29,150 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139864416732928)>, <ExcThread(job_monitor, started 139863638656768)>] 2019-08-22 02:47:52,652 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 61 s) 2019-08-22 02:47:52,652 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished 2019-08-22 02:47:52,714 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0) 2019-08-22 02:47:52,715 | INFO | MainThread | root | wrap_up | traces error code: 0 2019-08-22 02:47:52,715 | INFO | MainThread | root | wrap_up | pilot has finished 2019-08-22 02:47:52 UTC [wrapper] ==== pilot stdout END ==== 2019-08-22 02:47:52 UTC [wrapper] ==== wrapper stdout RESUME ==== 2019-08-22 02:47:52 UTC [wrapper] Pilot exit status: 0 2019-08-22 02:47:52 UTC [wrapper] STATUSCODE: 0 2019-08-22 02:47:52 UTC [wrapper] apfmon messages muted ---- find pandaID.out ---- total 48 -rw-------. 1 grid grid 11357 Jul 25 16:38 LICENSE drwx------. 14 grid grid 216 Aug 22 00:56 pilot -rwx------. 1 grid grid 20628 Aug 19 14:00 pilot.py -rw-------. 1 grid grid 9 Aug 19 14:00 PILOTVERSION -rw-------. 1 grid grid 2251 Jul 25 16:38 README.md -rw-------. 1 grid grid 221 Jul 25 16:38 TODO.md 2019-08-22 02:47:53 UTC [wrapper] Test setup, not cleaning 2019-08-22 02:47:53 UTC [wrapper] ==== wrapper stdout END ==== 2019-08-22 02:47:53 UTC [wrapper] ==== wrapper stderr END ==== 2019-08-22 02:47:53 UTC [wrapper] wrapper wrapperexiting ec=0, duration=13910 2019-08-22 02:47:53 UTC [wrapper] apfmon messages muted 2019-08-22 04:47:53,195: ***************diag file************ 2019-08-22 04:47:53,195: runtimeenvironments=APPS/HEP/ATLAS-SITE; Processors=1 WallTime=13909.44s KernelTime=393.79s UserTime=52490.90s CPUUsage=380% MaxResidentMemory=1945200kB AverageResidentMemory=0kB AverageTotalMemory=0kB AverageUnsharedMemory=0kB AverageUnsharedStack=0kB AverageSharedMemory=0kB PageSize=4096B MajorPageFaults=424666 MinorPageFaults=17776039 Swaps=0 ForcedSwitches=6037755 WaitSwitches=8681363 Inputs=102987320 Outputs=865552 SocketReceived=0 SocketSent=0 Signals=0 nodename=David_Cameron@dcameron04.cern.ch exitcode=0 2019-08-22 04:47:53,212: ******************************WorkDir*********************** 2019-08-22 04:47:53,212: total 275136 drwxrwx--x. 6 grid grid 4096 Aug 22 04:47 . drwxr-x--x. 3 grid grid 15 Aug 8 09:08 .. -rw-------. 1 grid grid 7469803 Aug 22 00:56 agis_ddmendpoints.json -rw-------. 1 grid grid 4335686 Aug 22 00:56 agis_schedconf.cvmfs.json drwx------. 2 grid grid 6 Aug 22 00:56 .alrb drwxr-xr-x. 3 grid grid 17 Aug 22 00:56 APPS -rw-------. 1 grid grid 538 Aug 22 00:56 .asetup -rw-------. 1 grid grid 826 Aug 22 00:57 .asetup.save -rw-rw-r--. 1 grid grid 0 Aug 22 00:56 boinc_lockfile -rw-rw-r--. 1 grid grid 8192 Aug 22 04:47 boinc_mmap_file -rw-rw-r--. 1 grid grid 537 Aug 22 04:40 boinc_task_state.xml -rw-rw-r--. 1 grid grid 267593167 Aug 22 00:56 EVNT.18605752._000350.pool.root.1 -rw-------. 1 grid grid 518 Aug 22 04:47 fl0NDmT1UKvnShfckohDCDFpABFKDmABFKDmniFNDmABFKDmNiliEm.diag -rw-------. 1 grid grid 99904 Aug 22 04:47 heartbeat.json -rw-rw-r--. 1 grid grid 5866 Aug 22 00:56 init_data.xml -rw-rw-r--. 1 grid grid 263686 Aug 22 00:56 input.tar.gz -rw-rw-r--. 1 grid grid 112 Aug 22 00:55 job.xml -rw-------. 1 grid grid 693205 Aug 22 04:47 log.18722261._017964.job.log.1 -rw-------. 1 grid grid 848791 Aug 22 04:47 log.18722261._017964.job.log.tgz.1 -rw-------. 1 grid grid 391 Aug 22 04:47 output.list -rw-------. 1 grid grid 2921 Aug 21 03:55 pandaJobData.out drwx------. 3 grid grid 174 Aug 19 14:00 pilot2 -rw-r--r--. 1 grid grid 255033 Aug 21 03:22 pilot2.tar.gz -rw-------. 1 grid grid 12560 Aug 22 04:47 pilotlog.txt -rw-r--r--. 1 grid grid 4468 Aug 21 03:50 queuedata.json -rw-rw-r--. 1 grid grid 815 Aug 22 00:56 RTE.tar.gz -rwxr-xr-x. 1 grid grid 8466 Aug 22 00:55 run_atlas -rwx------. 1 grid grid 12641 Aug 21 03:55 runpilot2-wrapper.sh -rw-rw-r--. 1 grid grid 692 Aug 22 04:47 runtime_log -rw-rw-r--. 1 grid grid 6807 Aug 22 04:47 runtime_log.err drwxrwx--x. 2 grid grid 131 Aug 22 04:47 shared -rw-rw-r--. 1 grid grid 8688 Aug 22 00:56 start_atlas.sh -rw-rw-r--. 1 grid grid 20264 Aug 22 04:47 stderr.txt -rw-rw-r--. 1 grid grid 107 Aug 22 00:55 wrapper_26015_x86_64-pc-linux-gnu -rw-rw-r--. 1 grid grid 28 Aug 22 04:47 wrapper_checkpoint.txt 2019-08-22 04:47:53,213: running start_atlas return value is 0 2019-08-22 04:47:53,213: Parent exit 0 2019-08-22 04:47:53,215: child process exit 0 04:47:53 (416): run_atlas exited; CPU time 52491.322867 04:47:53 (416): called boinc_finish(0) </stderr_txt> ]]>
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