Name | fGUMDm1hnIvnShfckohDCDFpABFKDmABFKDmQ0RKDmABFKDmXO16en_1 |
Workunit | 1918108 |
Created | 21 Aug 2019, 3:50:50 UTC |
Sent | 21 Aug 2019, 5:09:29 UTC |
Report deadline | 28 Aug 2019, 5:09:29 UTC |
Received | 21 Aug 2019, 17:58:12 UTC |
Server state | Over |
Outcome | Success |
Client state | Done |
Exit status | 0 (0x00000000) |
Computer ID | 3911 |
Run time | 1 hours 57 min 23 sec |
CPU time | 7 hours 6 min 30 sec |
Validate state | Valid |
Credit | 208.02 |
Device peak FLOPS | 12.76 GFLOPS |
Application version | ATLAS Simulation v0.72 (native_mt) x86_64-pc-linux-gnu |
Peak working set size | 1.78 GB |
Peak swap size | 2.57 GB |
Peak disk usage | 842.95 MB |
<core_client_version>7.7.0</core_client_version> <![CDATA[ <stderr_txt> 17:00:25 (16189): wrapper (7.7.26015): starting 17:00:25 (16189): wrapper: running run_atlas (--nthreads 4) 2019-08-21 17:00:25,972: singularity image is /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 2019-08-21 17:00:25,972: sys.argv = ['run_atlas', '--nthreads', '4'] 2019-08-21 17:00:25,973: THREADS=4 2019-08-21 17:00:25,975: Checking for CVMFS 2019-08-21 17:00:27,489: CVMFS is installed 2019-08-21 17:00:27,493: OS:CentOS Linux release 7.6.1810 (Core) 2019-08-21 17:00:27,493: This is not SLC6, need to run with Singularity.... 2019-08-21 17:00:27,493: Checking Singularity... 2019-08-21 17:00:27,497: Singularity is not installed, using version from CVMFS 2019-08-21 17:00:27,497: Testing the function of Singularity... 2019-08-21 17:00:27,497: Checking singularity with cmd:/cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 hostname 2019-08-21 17:00:27,710: Singularity Works... 2019-08-21 17:00:27,711: copy /home/grid/slots/0/shared/ATLAS.root_0 2019-08-21 17:00:28,509: copy /home/grid/slots/0/shared/input.tar.gz 2019-08-21 17:00:28,510: copy /home/grid/slots/0/shared/RTE.tar.gz 2019-08-21 17:00:28,510: copy /home/grid/slots/0/shared/start_atlas.sh 2019-08-21 17:00:28,511: export ATHENA_PROC_NUMBER=4; 2019-08-21 17:00:28,548: start atlas job with PandaID=4451049130 2019-08-21 17:00:28,548: cmd = /cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec --pwd /home/grid/slots/0 -B /cvmfs,/home /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sh start_atlas.sh > runtime_log 2> runtime_log.err 2019-08-21 18:57:46,660: running cmd return value is 0 2019-08-21 18:57:46,662: Moving ./HITS.18604991._051900.pool.root.1 to shared/HITS.pool.root.1 2019-08-21 18:57:46,663: *****************The last 100 lines of the pilot log****************** 2019-08-21 18:57:46,671: 2019-08-21 16:56:56,347 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-08-21 16:56:56,347 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4451049130 2019-08-21 16:56:56,347 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18604991 2019-08-21 16:56:56,347 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none) 2019-08-21 16:56:56,347 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE 2019-08-21 16:56:56,347 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished 2019-08-21 16:56:56,348 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0 2019-08-21 16:56:56,348 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0 2019-08-21 16:56:56,348 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag: 2019-08-21 16:56:56,348 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0 2019-08-21 16:56:56,348 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK 2019-08-21 16:56:56,348 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 25701 s 2019-08-21 16:56:56,348 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 200 2019-08-21 16:56:56,348 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0 2019-08-21 16:56:56,348 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 22993 2019-08-21 16:56:56,348 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: 22993 2019-08-21 16:56:56,348 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 4 2019-08-21 16:56:56,348 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False 2019-08-21 16:56:56,348 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-08-21 16:56:56,348 | INFO | retrieve | pilot.util.auxiliary | make_job_report | 2019-08-21 16:56:56,348 | INFO | retrieve | pilot.control.job | has_job_completed | job 4451049130 has completed 2019-08-21 16:56:56,348 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called 2019-08-21 16:56:56,358 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /home/grid/slots/0/PanDA_Pilot-4451049130 2019-08-21 16:56:57,363 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [22993] 2019-08-21 16:56:57,363 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 22993 2019-08-21 16:56:57,363 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes 2019-08-21 16:56:58,364 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes 2019-08-21 16:56:58,364 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=22993 2019-08-21 16:56:58,418 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [22993] (in reverse order) 2019-08-21 16:56:58,459 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s) 2019-08-21 16:56:58,459 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs 2019-08-21 16:56:58,459 | INFO | retrieve | pilot.control.job | retrieve | ready for new job 2019-08-21 16:56:58,459 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging No handlers could be found for logger "pilot.util.mpi" 2019-08-21 16:56:58,970 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1 2019-08-21 16:57:09,018 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1 2019-08-21 16:57:09,018 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /home/grid/slots/0 2019-08-21 16:57:09,050 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (35756441600 B) 2019-08-21 16:57:09,050 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job 2019-08-21 16:57:09,051 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished 2019-08-21 16:57:09,097 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished 2019-08-21 16:57:09,214 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished 2019-08-21 16:57:09,438 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration 2019-08-21 16:57:09,480 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished 2019-08-21 16:57:09,531 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 13 threads 2019-08-21 16:57:09,532 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140005947385600)>, <ExcThread(job, started 140005731112704)>, <ExcThread(monitor, started 140005680756480)>, <ExcThread(create_data_payload, started 140005689149184)>, <ExcThread(validate_pre, started 140005188036352)>, <ExcThread(queue_monitoring, started 140005196429056)>, <ExcThread(copytool_out, started 140005705934592)>, <ExcThread(copytool_in, started 140005162858240)>, <ExcThread(failed_post, started 140005154465536)>, <ExcThread(data, started 140005722720000)>, <ExcThread(queue_monitor, started 140004659558144)>, <ExcThread(job_monitor, started 140005146072832)>, <ExcThread(payload, started 140005697541888)>] 2019-08-21 16:57:09,564 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished 2019-08-21 16:57:09,717 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished 2019-08-21 16:57:09,723 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended 2019-08-21 16:57:09,879 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set 2019-08-21 16:57:09,879 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished 2019-08-21 16:57:09,897 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 9 threads 2019-08-21 16:57:09,897 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140005947385600)>, <ExcThread(job, started 140005731112704)>, <ExcThread(create_data_payload, started 140005689149184)>, <ExcThread(validate_pre, started 140005188036352)>, <ExcThread(queue_monitoring, started 140005196429056)>, <ExcThread(copytool_out, started 140005705934592)>, <ExcThread(data, started 140005722720000)>, <ExcThread(queue_monitor, started 140004659558144)>, <ExcThread(job_monitor, started 140005146072832)>] 2019-08-21 16:57:09,941 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set 2019-08-21 16:57:09,941 | DEBUG | data | pilot.control.data | control | [data] control thread has finished 2019-08-21 16:57:09,980 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished 2019-08-21 16:57:10,072 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration 2019-08-21 16:57:10,099 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 7 threads 2019-08-21 16:57:10,099 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140005947385600)>, <ExcThread(job, started 140005731112704)>, <ExcThread(validate_pre, started 140005188036352)>, <ExcThread(queue_monitoring, started 140005196429056)>, <ExcThread(copytool_out, started 140005705934592)>, <ExcThread(queue_monitor, started 140004659558144)>, <ExcThread(job_monitor, started 140005146072832)>] 2019-08-21 16:57:10,192 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set 2019-08-21 16:57:10,192 | DEBUG | job | pilot.control.job | control | [job] control thread has finished 2019-08-21 16:57:10,200 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 6 threads 2019-08-21 16:57:10,200 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140005947385600)>, <ExcThread(validate_pre, started 140005188036352)>, <ExcThread(queue_monitoring, started 140005196429056)>, <ExcThread(copytool_out, started 140005705934592)>, <ExcThread(queue_monitor, started 140004659558144)>, <ExcThread(job_monitor, started 140005146072832)>] 2019-08-21 16:57:10,225 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished 2019-08-21 16:57:10,300 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 5 threads 2019-08-21 16:57:10,301 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140005947385600)>, <ExcThread(queue_monitoring, started 140005196429056)>, <ExcThread(copytool_out, started 140005705934592)>, <ExcThread(queue_monitor, started 140004659558144)>, <ExcThread(job_monitor, started 140005146072832)>] 2019-08-21 16:57:10,439 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished 2019-08-21 16:57:10,502 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 4 threads 2019-08-21 16:57:10,503 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140005947385600)>, <ExcThread(queue_monitoring, started 140005196429056)>, <ExcThread(queue_monitor, started 140004659558144)>, <ExcThread(job_monitor, started 140005146072832)>] 2019-08-21 16:57:10,851 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration 2019-08-21 16:57:10,851 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished 2019-08-21 16:57:10,906 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 3 threads 2019-08-21 16:57:10,906 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140005947385600)>, <ExcThread(queue_monitoring, started 140005196429056)>, <ExcThread(job_monitor, started 140005146072832)>] 2019-08-21 16:57:13,073 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished 2019-08-21 16:57:13,121 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 2 threads 2019-08-21 16:57:13,122 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140005947385600)>, <ExcThread(job_monitor, started 140005146072832)>] 2019-08-21 16:57:46,242 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 62 s) 2019-08-21 16:57:46,242 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished 2019-08-21 16:57:46,262 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0) 2019-08-21 16:57:46,262 | INFO | MainThread | root | wrap_up | traces error code: 0 2019-08-21 16:57:46,262 | INFO | MainThread | root | wrap_up | pilot has finished 2019-08-21 16:57:46 UTC [wrapper] ==== pilot stdout END ==== 2019-08-21 16:57:46 UTC [wrapper] ==== wrapper stdout RESUME ==== 2019-08-21 16:57:46 UTC [wrapper] Pilot exit status: 0 2019-08-21 16:57:46 UTC [wrapper] STATUSCODE: 0 2019-08-21 16:57:46 UTC [wrapper] apfmon messages muted ---- find pandaID.out ---- total 44 -rw-------. 1 grid grid 11357 Jul 25 16:38 LICENSE drwx------. 14 grid grid 216 Aug 21 17:00 pilot -rwx------. 1 grid grid 20463 Jul 25 16:38 pilot.py -rw-------. 1 grid grid 8 Aug 7 13:02 PILOTVERSION -rw-------. 1 grid grid 2251 Jul 25 16:38 README.md -rw-------. 1 grid grid 221 Jul 25 16:38 TODO.md 2019-08-21 16:57:46 UTC [wrapper] Test setup, not cleaning 2019-08-21 16:57:46 UTC [wrapper] ==== wrapper stdout END ==== 2019-08-21 16:57:46 UTC [wrapper] ==== wrapper stderr END ==== 2019-08-21 16:57:46 UTC [wrapper] wrapper wrapperexiting ec=0, duration=7038 2019-08-21 16:57:46 UTC [wrapper] apfmon messages muted 2019-08-21 18:57:46,674: ***************diag file************ 2019-08-21 18:57:46,675: runtimeenvironments=APPS/HEP/ATLAS-SITE; Processors=1 WallTime=7037.75s KernelTime=223.83s UserTime=25590.20s CPUUsage=366% MaxResidentMemory=1908928kB AverageResidentMemory=0kB AverageTotalMemory=0kB AverageUnsharedMemory=0kB AverageUnsharedStack=0kB AverageSharedMemory=0kB PageSize=4096B MajorPageFaults=293834 MinorPageFaults=13408474 Swaps=0 ForcedSwitches=3000347 WaitSwitches=5879023 Inputs=71398008 Outputs=496368 SocketReceived=0 SocketSent=0 Signals=0 nodename=David_Cameron@dcameron04.cern.ch exitcode=0 2019-08-21 18:57:46,684: ******************************WorkDir*********************** 2019-08-21 18:57:46,684: total 383304 drwxrwx--x. 6 grid grid 4096 Aug 21 18:57 . drwxr-x--x. 3 grid grid 15 Aug 8 09:08 .. -rw-------. 1 grid grid 7469803 Aug 21 17:00 agis_ddmendpoints.json -rw-------. 1 grid grid 4330661 Aug 21 17:00 agis_schedconf.cvmfs.json drwx------. 2 grid grid 6 Aug 21 17:00 .alrb drwxr-xr-x. 3 grid grid 17 Aug 21 17:00 APPS -rw-------. 1 grid grid 538 Aug 21 17:00 .asetup -rw-------. 1 grid grid 826 Aug 21 17:01 .asetup.save -rw-rw-r--. 1 grid grid 0 Aug 21 17:00 boinc_lockfile -rw-rw-r--. 1 grid grid 8192 Aug 21 18:57 boinc_mmap_file -rw-rw-r--. 1 grid grid 536 Aug 21 18:51 boinc_task_state.xml -rw-rw-r--. 1 grid grid 378676658 Aug 21 17:00 EVNT.17323818._001360.pool.root.1 -rw-------. 1 grid grid 516 Aug 21 18:57 fGUMDm1hnIvnShfckohDCDFpABFKDmABFKDmQ0RKDmABFKDmXO16en.diag -rw-------. 1 grid grid 76704 Aug 21 18:56 heartbeat.json -rw-rw-r--. 1 grid grid 5866 Aug 21 17:00 init_data.xml -rw-rw-r--. 1 grid grid 261612 Aug 21 17:00 input.tar.gz -rw-rw-r--. 1 grid grid 112 Aug 21 17:00 job.xml -rw-------. 1 grid grid 445037 Aug 21 18:57 log.18604991._051900.job.log.1 -rw-------. 1 grid grid 822571 Aug 21 18:56 log.18604991._051900.job.log.tgz.1 -rw-------. 1 grid grid 391 Aug 21 18:57 output.list -rw-------. 1 grid grid 2872 Aug 16 11:28 pandaJobData.out drwx------. 3 grid grid 174 Aug 7 13:02 pilot2 -rw-r--r--. 1 grid grid 253018 Aug 16 11:25 pilot2.tar.gz -rw-------. 1 grid grid 9983 Aug 21 18:57 pilotlog.txt -rw-r--r--. 1 grid grid 4468 Aug 16 11:25 queuedata.json -rw-rw-r--. 1 grid grid 815 Aug 21 17:00 RTE.tar.gz -rwxr-xr-x. 1 grid grid 8466 Aug 21 17:00 run_atlas -rwx------. 1 grid grid 12641 Aug 16 11:28 runpilot2-wrapper.sh -rw-rw-r--. 1 grid grid 692 Aug 21 18:57 runtime_log -rw-rw-r--. 1 grid grid 6807 Aug 21 18:57 runtime_log.err drwxrwx--x. 2 grid grid 131 Aug 21 18:57 shared -rw-rw-r--. 1 grid grid 8688 Aug 21 17:00 start_atlas.sh -rw-rw-r--. 1 grid grid 18587 Aug 21 18:57 stderr.txt -rw-rw-r--. 1 grid grid 107 Aug 21 17:00 wrapper_26015_x86_64-pc-linux-gnu -rw-rw-r--. 1 grid grid 27 Aug 21 18:57 wrapper_checkpoint.txt 2019-08-21 18:57:46,684: running start_atlas return value is 0 2019-08-21 18:57:46,684: Parent exit 0 2019-08-21 18:57:46,686: child process exit 0 18:57:47 (16189): run_atlas exited; CPU time 25590.597875 18:57:47 (16189): called boinc_finish(0) </stderr_txt> ]]>
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