Name | bj7LDmXpMKvnShfckohDCDFpABFKDmABFKDm231MDmABFKDm8FmWyn_2 |
Workunit | 1919830 |
Created | 21 Aug 2019, 22:20:50 UTC |
Sent | 21 Aug 2019, 23:56:21 UTC |
Report deadline | 28 Aug 2019, 23:56:21 UTC |
Received | 22 Aug 2019, 5:30:50 UTC |
Server state | Over |
Outcome | Success |
Client state | Done |
Exit status | 0 (0x00000000) |
Computer ID | 3911 |
Run time | 1 hours 42 min 28 sec |
CPU time | 6 hours 5 min 26 sec |
Validate state | Valid |
Credit | 181.58 |
Device peak FLOPS | 12.76 GFLOPS |
Application version | ATLAS Simulation v0.72 (native_mt) x86_64-pc-linux-gnu |
Peak working set size | 1.79 GB |
Peak swap size | 3.72 GB |
Peak disk usage | 714.85 MB |
<core_client_version>7.7.0</core_client_version> <![CDATA[ <stderr_txt> 04:47:57 (936): wrapper (7.7.26015): starting 04:47:57 (936): wrapper: running run_atlas (--nthreads 4) 2019-08-22 04:47:57,633: singularity image is /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 2019-08-22 04:47:57,633: sys.argv = ['run_atlas', '--nthreads', '4'] 2019-08-22 04:47:57,634: THREADS=4 2019-08-22 04:47:57,635: Checking for CVMFS 2019-08-22 04:47:59,025: CVMFS is installed 2019-08-22 04:47:59,029: OS:CentOS Linux release 7.6.1810 (Core) 2019-08-22 04:47:59,029: This is not SLC6, need to run with Singularity.... 2019-08-22 04:47:59,029: Checking Singularity... 2019-08-22 04:47:59,032: Singularity is not installed, using version from CVMFS 2019-08-22 04:47:59,032: Testing the function of Singularity... 2019-08-22 04:47:59,032: Checking singularity with cmd:/cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 hostname 2019-08-22 04:47:59,328: Singularity Works... 2019-08-22 04:47:59,328: copy /home/grid/slots/0/shared/ATLAS.root_0 2019-08-22 04:47:59,716: copy /home/grid/slots/0/shared/input.tar.gz 2019-08-22 04:47:59,718: copy /home/grid/slots/0/shared/RTE.tar.gz 2019-08-22 04:47:59,718: copy /home/grid/slots/0/shared/start_atlas.sh 2019-08-22 04:47:59,718: export ATHENA_PROC_NUMBER=4; 2019-08-22 04:47:59,749: start atlas job with PandaID=4453843644 2019-08-22 04:47:59,749: cmd = /cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec --pwd /home/grid/slots/0 -B /cvmfs,/home /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sh start_atlas.sh > runtime_log 2> runtime_log.err 2019-08-22 06:30:24,396: running cmd return value is 0 2019-08-22 06:30:24,400: Moving ./HITS.18722144._023955.pool.root.1 to shared/HITS.pool.root.1 2019-08-22 06:30:24,400: *****************The last 100 lines of the pilot log****************** 2019-08-22 06:30:24,411: 2019-08-22 04:29:38,216 | INFO | retrieve | pilot.util.auxiliary | make_job_report | 2019-08-22 04:29:38,216 | INFO | retrieve | pilot.util.auxiliary | make_job_report | job summary report 2019-08-22 04:29:38,216 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-08-22 04:29:38,216 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4453843644 2019-08-22 04:29:38,217 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18722144 2019-08-22 04:29:38,217 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none) 2019-08-22 04:29:38,217 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE 2019-08-22 04:29:38,217 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished 2019-08-22 04:29:38,217 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0 2019-08-22 04:29:38,217 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0 2019-08-22 04:29:38,217 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag: 2019-08-22 04:29:38,217 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0 2019-08-22 04:29:38,217 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK 2019-08-22 04:29:38,217 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 22033 s 2019-08-22 04:29:38,217 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 200 2019-08-22 04:29:38,218 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0 2019-08-22 04:29:38,218 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 7797 2019-08-22 04:29:38,218 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: 7797 2019-08-22 04:29:38,218 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 4 2019-08-22 04:29:38,218 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False 2019-08-22 04:29:38,218 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-08-22 04:29:38,218 | INFO | retrieve | pilot.util.auxiliary | make_job_report | 2019-08-22 04:29:38,218 | INFO | retrieve | pilot.control.job | has_job_completed | job 4453843644 has completed 2019-08-22 04:29:38,218 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called 2019-08-22 04:29:38,231 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /home/grid/slots/0/PanDA_Pilot-4453843644 2019-08-22 04:29:39,237 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [7797] 2019-08-22 04:29:39,237 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 7797 2019-08-22 04:29:39,237 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes 2019-08-22 04:29:40,243 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes 2019-08-22 04:29:40,243 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=7797 2019-08-22 04:29:40,297 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [7797] (in reverse order) 2019-08-22 04:29:40,341 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s) 2019-08-22 04:29:40,341 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs 2019-08-22 04:29:40,341 | INFO | retrieve | pilot.control.job | retrieve | ready for new job 2019-08-22 04:29:40,341 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging No handlers could be found for logger "pilot.util.mpi" 2019-08-22 04:29:40,852 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1 2019-08-22 04:29:50,893 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1 2019-08-22 04:29:50,894 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /home/grid/slots/0 2019-08-22 04:29:50,930 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (35274096640 B) 2019-08-22 04:29:50,931 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job 2019-08-22 04:29:50,931 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished 2019-08-22 04:29:50,932 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended 2019-08-22 04:29:50,959 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration 2019-08-22 04:29:51,115 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set 2019-08-22 04:29:51,116 | DEBUG | job | pilot.control.job | control | [job] control thread has finished 2019-08-22 04:29:51,196 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished 2019-08-22 04:29:51,263 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished 2019-08-22 04:29:51,333 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 12 threads 2019-08-22 04:29:51,334 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140093582087936)>, <ExcThread(payload, started 140092974823168)>, <ExcThread(copytool_in, started 140092370843392)>, <ExcThread(job_monitor, started 140092941252352)>, <ExcThread(failed_post, started 140092362450688)>, <ExcThread(data, started 140093349029632)>, <ExcThread(execute_payloads, started 140092354057984)>, <ExcThread(queue_monitor, started 140092924466944)>, <ExcThread(validate, started 140093357422336)>, <ExcThread(validate_pre, started 140092958037760)>, <ExcThread(queue_monitoring, started 140093323851520)>, <ExcThread(copytool_out, started 140093332244224)>] 2019-08-22 04:29:51,484 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished 2019-08-22 04:29:51,530 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration 2019-08-22 04:29:51,538 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set 2019-08-22 04:29:51,538 | DEBUG | data | pilot.control.data | control | [data] control thread has finished 2019-08-22 04:29:51,635 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 10 threads 2019-08-22 04:29:51,635 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140093582087936)>, <ExcThread(payload, started 140092974823168)>, <ExcThread(copytool_in, started 140092370843392)>, <ExcThread(job_monitor, started 140092941252352)>, <ExcThread(execute_payloads, started 140092354057984)>, <ExcThread(queue_monitor, started 140092924466944)>, <ExcThread(validate, started 140093357422336)>, <ExcThread(validate_pre, started 140092958037760)>, <ExcThread(queue_monitoring, started 140093323851520)>, <ExcThread(copytool_out, started 140093332244224)>] 2019-08-22 04:29:51,748 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished 2019-08-22 04:29:51,809 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished 2019-08-22 04:29:51,812 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set 2019-08-22 04:29:51,813 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished 2019-08-22 04:29:51,837 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 7 threads 2019-08-22 04:29:51,837 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140093582087936)>, <ExcThread(copytool_in, started 140092370843392)>, <ExcThread(job_monitor, started 140092941252352)>, <ExcThread(queue_monitor, started 140092924466944)>, <ExcThread(validate_pre, started 140092958037760)>, <ExcThread(queue_monitoring, started 140093323851520)>, <ExcThread(copytool_out, started 140093332244224)>] 2019-08-22 04:29:51,960 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished 2019-08-22 04:29:52,038 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 6 threads 2019-08-22 04:29:52,039 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140093582087936)>, <ExcThread(copytool_in, started 140092370843392)>, <ExcThread(job_monitor, started 140092941252352)>, <ExcThread(queue_monitor, started 140092924466944)>, <ExcThread(validate_pre, started 140092958037760)>, <ExcThread(queue_monitoring, started 140093323851520)>] 2019-08-22 04:29:52,240 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished 2019-08-22 04:29:52,249 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration 2019-08-22 04:29:52,249 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished 2019-08-22 04:29:52,341 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 4 threads 2019-08-22 04:29:52,341 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140093582087936)>, <ExcThread(job_monitor, started 140092941252352)>, <ExcThread(validate_pre, started 140092958037760)>, <ExcThread(queue_monitoring, started 140093323851520)>] 2019-08-22 04:29:52,351 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished 2019-08-22 04:29:52,442 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 3 threads 2019-08-22 04:29:52,442 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140093582087936)>, <ExcThread(job_monitor, started 140092941252352)>, <ExcThread(queue_monitoring, started 140093323851520)>] 2019-08-22 04:29:54,531 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished 2019-08-22 04:29:54,557 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 2 threads 2019-08-22 04:29:54,558 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140093582087936)>, <ExcThread(job_monitor, started 140092941252352)>] 2019-08-22 04:30:23,787 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 61 s) 2019-08-22 04:30:23,788 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished 2019-08-22 04:30:23,875 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0) 2019-08-22 04:30:23,876 | INFO | MainThread | root | wrap_up | traces error code: 0 2019-08-22 04:30:23,876 | INFO | MainThread | root | wrap_up | pilot has finished 2019-08-22 04:30:24 UTC [wrapper] ==== pilot stdout END ==== 2019-08-22 04:30:24 UTC [wrapper] ==== wrapper stdout RESUME ==== 2019-08-22 04:30:24 UTC [wrapper] Pilot exit status: 0 2019-08-22 04:30:24 UTC [wrapper] STATUSCODE: 0 2019-08-22 04:30:24 UTC [wrapper] apfmon messages muted ---- find pandaID.out ---- total 48 -rw-------. 1 grid grid 11357 Jul 25 16:38 LICENSE drwx------. 14 grid grid 216 Aug 22 04:48 pilot -rwx------. 1 grid grid 20628 Aug 19 14:00 pilot.py -rw-------. 1 grid grid 9 Aug 19 14:00 PILOTVERSION -rw-------. 1 grid grid 2251 Jul 25 16:38 README.md -rw-------. 1 grid grid 221 Jul 25 16:38 TODO.md 2019-08-22 04:30:24 UTC [wrapper] Test setup, not cleaning 2019-08-22 04:30:24 UTC [wrapper] ==== wrapper stdout END ==== 2019-08-22 04:30:24 UTC [wrapper] ==== wrapper stderr END ==== 2019-08-22 04:30:24 UTC [wrapper] wrapper wrapperexiting ec=0, duration=6144 2019-08-22 04:30:24 UTC [wrapper] apfmon messages muted 2019-08-22 06:30:24,415: ***************diag file************ 2019-08-22 06:30:24,415: runtimeenvironments=APPS/HEP/ATLAS-SITE; Processors=1 WallTime=6144.27s KernelTime=211.76s UserTime=21926.12s CPUUsage=360% MaxResidentMemory=1945264kB AverageResidentMemory=0kB AverageTotalMemory=0kB AverageUnsharedMemory=0kB AverageUnsharedStack=0kB AverageSharedMemory=0kB PageSize=4096B MajorPageFaults=273878 MinorPageFaults=12906360 Swaps=0 ForcedSwitches=2590960 WaitSwitches=5271433 Inputs=66672488 Outputs=545216 SocketReceived=0 SocketSent=0 Signals=0 nodename=David_Cameron@dcameron04.cern.ch exitcode=0 2019-08-22 06:30:24,425: ******************************WorkDir*********************** 2019-08-22 06:30:24,426: total 249640 drwxrwx--x. 6 grid grid 4096 Aug 22 06:30 . drwxr-x--x. 3 grid grid 15 Aug 8 09:08 .. -rw-------. 1 grid grid 7469803 Aug 22 04:48 agis_ddmendpoints.json -rw-------. 1 grid grid 4335717 Aug 22 04:48 agis_schedconf.cvmfs.json drwx------. 2 grid grid 6 Aug 22 04:48 .alrb drwxr-xr-x. 3 grid grid 17 Aug 22 04:47 APPS -rw-------. 1 grid grid 538 Aug 22 04:48 .asetup -rw-------. 1 grid grid 826 Aug 22 04:49 .asetup.save -rw-------. 1 grid grid 516 Aug 22 06:30 bj7LDmXpMKvnShfckohDCDFpABFKDmABFKDm231MDmABFKDm8FmWyn.diag -rw-rw-r--. 1 grid grid 0 Aug 22 04:47 boinc_lockfile -rw-rw-r--. 1 grid grid 8192 Aug 22 06:30 boinc_mmap_file -rw-rw-r--. 1 grid grid 536 Aug 22 06:24 boinc_task_state.xml -rw-rw-r--. 1 grid grid 241876017 Aug 22 04:47 EVNT.18605742._000466.pool.root.1 -rw-------. 1 grid grid 56987 Aug 22 06:29 heartbeat.json -rw-rw-r--. 1 grid grid 5866 Aug 22 04:47 init_data.xml -rw-rw-r--. 1 grid grid 263688 Aug 22 04:47 input.tar.gz -rw-rw-r--. 1 grid grid 112 Aug 22 04:47 job.xml -rw-------. 1 grid grid 386264 Aug 22 06:30 log.18722144._023955.job.log.1 -rw-------. 1 grid grid 816489 Aug 22 06:29 log.18722144._023955.job.log.tgz.1 -rw-------. 1 grid grid 391 Aug 22 06:30 output.list -rw-------. 1 grid grid 2921 Aug 20 19:10 pandaJobData.out drwx------. 3 grid grid 174 Aug 19 14:00 pilot2 -rw-r--r--. 1 grid grid 255033 Aug 20 18:28 pilot2.tar.gz -rw-------. 1 grid grid 9451 Aug 22 06:30 pilotlog.txt -rw-r--r--. 1 grid grid 4468 Aug 20 19:10 queuedata.json -rw-rw-r--. 1 grid grid 815 Aug 22 04:47 RTE.tar.gz -rwxr-xr-x. 1 grid grid 8466 Aug 22 04:47 run_atlas -rwx------. 1 grid grid 12641 Aug 20 19:10 runpilot2-wrapper.sh -rw-rw-r--. 1 grid grid 692 Aug 22 06:30 runtime_log -rw-rw-r--. 1 grid grid 6807 Aug 22 06:30 runtime_log.err drwxrwx--x. 2 grid grid 131 Aug 22 06:30 shared -rw-rw-r--. 1 grid grid 8688 Aug 22 04:47 start_atlas.sh -rw-rw-r--. 1 grid grid 18309 Aug 22 06:30 stderr.txt -rw-rw-r--. 1 grid grid 107 Aug 22 04:47 wrapper_26015_x86_64-pc-linux-gnu -rw-rw-r--. 1 grid grid 27 Aug 22 06:30 wrapper_checkpoint.txt 2019-08-22 06:30:24,426: running start_atlas return value is 0 2019-08-22 06:30:24,426: Parent exit 0 2019-08-22 06:30:24,428: child process exit 0 06:30:24 (936): run_atlas exited; CPU time 21926.515811 06:30:24 (936): called boinc_finish(0) </stderr_txt> ]]>
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