Name | zjeKDmnhjHvnShfckohDCDFpABFKDmABFKDmbtLaDmABFKDm6ZTVHm_2 |
Workunit | 1917044 |
Created | 22 Aug 2019, 2:07:07 UTC |
Sent | 22 Aug 2019, 3:48:17 UTC |
Report deadline | 29 Aug 2019, 3:48:17 UTC |
Received | 22 Aug 2019, 13:43:24 UTC |
Server state | Over |
Outcome | Success |
Client state | Done |
Exit status | 0 (0x00000000) |
Computer ID | 3911 |
Run time | 3 hours 11 min 37 sec |
CPU time | 11 hours 55 min 12 sec |
Validate state | Valid |
Credit | 339.57 |
Device peak FLOPS | 12.76 GFLOPS |
Application version | ATLAS Simulation v0.72 (native_mt) x86_64-pc-linux-gnu |
Peak working set size | 1.81 GB |
Peak swap size | 3.72 GB |
Peak disk usage | 606.48 MB |
<core_client_version>7.7.0</core_client_version> <![CDATA[ <stderr_txt> 11:31:26 (13984): wrapper (7.7.26015): starting 11:31:26 (13984): wrapper: running run_atlas (--nthreads 4) 2019-08-22 11:31:26,767: singularity image is /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 2019-08-22 11:31:26,767: sys.argv = ['run_atlas', '--nthreads', '4'] 2019-08-22 11:31:26,768: THREADS=4 2019-08-22 11:31:26,769: Checking for CVMFS 2019-08-22 11:31:28,062: CVMFS is installed 2019-08-22 11:31:28,066: OS:CentOS Linux release 7.6.1810 (Core) 2019-08-22 11:31:28,066: This is not SLC6, need to run with Singularity.... 2019-08-22 11:31:28,066: Checking Singularity... 2019-08-22 11:31:28,069: Singularity is not installed, using version from CVMFS 2019-08-22 11:31:28,070: Testing the function of Singularity... 2019-08-22 11:31:28,070: Checking singularity with cmd:/cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 hostname 2019-08-22 11:31:28,339: Singularity Works... 2019-08-22 11:31:28,339: copy /home/grid/slots/0/shared/ATLAS.root_0 2019-08-22 11:31:28,749: copy /home/grid/slots/0/shared/input.tar.gz 2019-08-22 11:31:28,750: copy /home/grid/slots/0/shared/RTE.tar.gz 2019-08-22 11:31:28,750: copy /home/grid/slots/0/shared/start_atlas.sh 2019-08-22 11:31:28,750: export ATHENA_PROC_NUMBER=4; 2019-08-22 11:31:28,771: start atlas job with PandaID=4443398862 2019-08-22 11:31:28,771: cmd = /cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec --pwd /home/grid/slots/0 -B /cvmfs,/home /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sh start_atlas.sh > runtime_log 2> runtime_log.err 2019-08-22 14:43:00,393: running cmd return value is 0 2019-08-22 14:43:00,396: Moving ./HITS.18722432._022197.pool.root.1 to shared/HITS.pool.root.1 2019-08-22 14:43:00,396: *****************The last 100 lines of the pilot log****************** 2019-08-22 14:43:00,405: 2019-08-22 12:42:31,629 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18722432 2019-08-22 12:42:31,629 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none) 2019-08-22 12:42:31,630 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE 2019-08-22 12:42:31,630 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished 2019-08-22 12:42:31,630 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0 2019-08-22 12:42:31,630 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0 2019-08-22 12:42:31,630 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag: 2019-08-22 12:42:31,630 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0 2019-08-22 12:42:31,630 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK 2019-08-22 12:42:31,630 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 43094 s 2019-08-22 12:42:31,630 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 200 2019-08-22 12:42:31,630 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0 2019-08-22 12:42:31,630 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 20763 2019-08-22 12:42:31,630 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: 20763 2019-08-22 12:42:31,630 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 4 2019-08-22 12:42:31,630 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False 2019-08-22 12:42:31,631 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-08-22 12:42:31,631 | INFO | retrieve | pilot.util.auxiliary | make_job_report | 2019-08-22 12:42:31,631 | INFO | retrieve | pilot.control.job | has_job_completed | job 4443398862 has completed 2019-08-22 12:42:31,631 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called 2019-08-22 12:42:31,638 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /home/grid/slots/0/PanDA_Pilot-4443398862 2019-08-22 12:42:32,641 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [20763] 2019-08-22 12:42:32,641 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 20763 2019-08-22 12:42:32,641 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes 2019-08-22 12:42:33,646 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes 2019-08-22 12:42:33,647 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=20763 2019-08-22 12:42:33,701 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [20763] (in reverse order) 2019-08-22 12:42:33,746 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s) 2019-08-22 12:42:33,746 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs 2019-08-22 12:42:33,746 | INFO | retrieve | pilot.control.job | retrieve | ready for new job 2019-08-22 12:42:33,746 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging No handlers could be found for logger "pilot.util.mpi" 2019-08-22 12:42:34,257 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1 2019-08-22 12:42:44,295 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1 2019-08-22 12:42:44,296 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /home/grid/slots/0 2019-08-22 12:42:44,338 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (34595667968 B) 2019-08-22 12:42:44,338 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job 2019-08-22 12:42:44,339 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished 2019-08-22 12:42:44,629 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended 2019-08-22 12:42:44,682 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 15 threads 2019-08-22 12:42:44,683 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140514145146624)>, <ExcThread(job, started 140513928873728)>, <ExcThread(copytool_in, started 140513009202944)>, <ExcThread(payload, started 140513546073856)>, <ExcThread(job_monitor, started 140513520895744)>, <ExcThread(copytool_out, started 140513895302912)>, <ExcThread(validate_post, started 140513495717632)>, <ExcThread(failed_post, started 140512992417536)>, <ExcThread(create_data_payload, started 140513903695616)>, <ExcThread(queue_monitor, started 140513000810240)>, <ExcThread(execute_payloads, started 140512984024832)>, <ExcThread(queue_monitoring, started 140513537681152)>, <ExcThread(validate, started 140513920481024)>, <ExcThread(validate_pre, started 140513504110336)>, <ExcThread(data, started 140513912088320)>] 2019-08-22 12:42:44,762 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished 2019-08-22 12:42:44,892 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished 2019-08-22 12:42:44,968 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration 2019-08-22 12:42:45,070 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished 2019-08-22 12:42:45,084 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 12 threads 2019-08-22 12:42:45,085 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140514145146624)>, <ExcThread(job, started 140513928873728)>, <ExcThread(payload, started 140513546073856)>, <ExcThread(job_monitor, started 140513520895744)>, <ExcThread(copytool_out, started 140513895302912)>, <ExcThread(validate_post, started 140513495717632)>, <ExcThread(failed_post, started 140512992417536)>, <ExcThread(queue_monitor, started 140513000810240)>, <ExcThread(execute_payloads, started 140512984024832)>, <ExcThread(queue_monitoring, started 140513537681152)>, <ExcThread(validate, started 140513920481024)>, <ExcThread(data, started 140513912088320)>] 2019-08-22 12:42:45,173 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set 2019-08-22 12:42:45,173 | DEBUG | data | pilot.control.data | control | [data] control thread has finished 2019-08-22 12:42:45,262 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished 2019-08-22 12:42:45,306 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished 2019-08-22 12:42:45,369 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set 2019-08-22 12:42:45,369 | DEBUG | job | pilot.control.job | control | [job] control thread has finished 2019-08-22 12:42:45,386 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 8 threads 2019-08-22 12:42:45,387 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140514145146624)>, <ExcThread(payload, started 140513546073856)>, <ExcThread(job_monitor, started 140513520895744)>, <ExcThread(copytool_out, started 140513895302912)>, <ExcThread(failed_post, started 140512992417536)>, <ExcThread(queue_monitor, started 140513000810240)>, <ExcThread(execute_payloads, started 140512984024832)>, <ExcThread(queue_monitoring, started 140513537681152)>] 2019-08-22 12:42:45,544 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set 2019-08-22 12:42:45,544 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished 2019-08-22 12:42:45,551 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 7 threads 2019-08-22 12:42:45,552 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140514145146624)>, <ExcThread(job_monitor, started 140513520895744)>, <ExcThread(copytool_out, started 140513895302912)>, <ExcThread(failed_post, started 140512992417536)>, <ExcThread(queue_monitor, started 140513000810240)>, <ExcThread(execute_payloads, started 140512984024832)>, <ExcThread(queue_monitoring, started 140513537681152)>] 2019-08-22 12:42:45,576 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration 2019-08-22 12:42:45,795 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished 2019-08-22 12:42:45,854 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 6 threads 2019-08-22 12:42:45,854 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140514145146624)>, <ExcThread(job_monitor, started 140513520895744)>, <ExcThread(copytool_out, started 140513895302912)>, <ExcThread(failed_post, started 140512992417536)>, <ExcThread(queue_monitor, started 140513000810240)>, <ExcThread(queue_monitoring, started 140513537681152)>] 2019-08-22 12:42:45,920 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished 2019-08-22 12:42:45,955 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 5 threads 2019-08-22 12:42:45,956 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140514145146624)>, <ExcThread(job_monitor, started 140513520895744)>, <ExcThread(copytool_out, started 140513895302912)>, <ExcThread(queue_monitor, started 140513000810240)>, <ExcThread(queue_monitoring, started 140513537681152)>] 2019-08-22 12:42:45,969 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished 2019-08-22 12:42:46,056 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 4 threads 2019-08-22 12:42:46,057 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140514145146624)>, <ExcThread(job_monitor, started 140513520895744)>, <ExcThread(queue_monitor, started 140513000810240)>, <ExcThread(queue_monitoring, started 140513537681152)>] 2019-08-22 12:42:46,146 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration 2019-08-22 12:42:46,146 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished 2019-08-22 12:42:46,157 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 3 threads 2019-08-22 12:42:46,158 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140514145146624)>, <ExcThread(job_monitor, started 140513520895744)>, <ExcThread(queue_monitoring, started 140513537681152)>] 2019-08-22 12:42:48,577 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished 2019-08-22 12:42:48,675 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 2 threads 2019-08-22 12:42:48,676 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140514145146624)>, <ExcThread(job_monitor, started 140513520895744)>] 2019-08-22 12:42:59,926 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 61 s) 2019-08-22 12:42:59,926 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished 2019-08-22 12:42:59,956 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0) 2019-08-22 12:42:59,957 | INFO | MainThread | root | wrap_up | traces error code: 0 2019-08-22 12:42:59,957 | INFO | MainThread | root | wrap_up | pilot has finished 2019-08-22 12:43:00 UTC [wrapper] ==== pilot stdout END ==== 2019-08-22 12:43:00 UTC [wrapper] ==== wrapper stdout RESUME ==== 2019-08-22 12:43:00 UTC [wrapper] Pilot exit status: 0 2019-08-22 12:43:00 UTC [wrapper] STATUSCODE: 0 2019-08-22 12:43:00 UTC [wrapper] apfmon messages muted ---- find pandaID.out ---- total 44 -rw-------. 1 grid grid 11357 Jul 25 16:38 LICENSE drwx------. 14 grid grid 216 Aug 22 11:31 pilot -rwx------. 1 grid grid 20463 Jul 25 16:38 pilot.py -rw-------. 1 grid grid 8 Aug 7 13:02 PILOTVERSION -rw-------. 1 grid grid 2251 Jul 25 16:38 README.md -rw-------. 1 grid grid 221 Jul 25 16:38 TODO.md 2019-08-22 12:43:00 UTC [wrapper] Test setup, not cleaning 2019-08-22 12:43:00 UTC [wrapper] ==== wrapper stdout END ==== 2019-08-22 12:43:00 UTC [wrapper] ==== wrapper stderr END ==== 2019-08-22 12:43:00 UTC [wrapper] wrapper wrapperexiting ec=0, duration=11491 2019-08-22 12:43:00 UTC [wrapper] apfmon messages muted 2019-08-22 14:43:00,410: ***************diag file************ 2019-08-22 14:43:00,410: runtimeenvironments=APPS/HEP/ATLAS-SITE; Processors=1 WallTime=11491.26s KernelTime=333.11s UserTime=42911.83s CPUUsage=376% MaxResidentMemory=1945196kB AverageResidentMemory=0kB AverageTotalMemory=0kB AverageUnsharedMemory=0kB AverageUnsharedStack=0kB AverageSharedMemory=0kB PageSize=4096B MajorPageFaults=381432 MinorPageFaults=16339384 Swaps=0 ForcedSwitches=4974122 WaitSwitches=7801675 Inputs=92514960 Outputs=749648 SocketReceived=0 SocketSent=0 Signals=0 nodename=David_Cameron@dcameron04.cern.ch exitcode=0 2019-08-22 14:43:00,420: ******************************WorkDir*********************** 2019-08-22 14:43:00,420: total 229836 drwxrwx--x. 6 grid grid 4096 Aug 22 14:43 . drwxr-x--x. 3 grid grid 15 Aug 8 09:08 .. -rw-------. 1 grid grid 7469803 Aug 22 11:31 agis_ddmendpoints.json -rw-------. 1 grid grid 4328394 Aug 22 11:31 agis_schedconf.cvmfs.json drwx------. 2 grid grid 6 Aug 22 11:31 .alrb drwxr-xr-x. 3 grid grid 17 Aug 22 11:31 APPS -rw-------. 1 grid grid 538 Aug 22 11:31 .asetup -rw-------. 1 grid grid 826 Aug 22 11:32 .asetup.save -rw-rw-r--. 1 grid grid 0 Aug 22 11:31 boinc_lockfile -rw-rw-r--. 1 grid grid 8192 Aug 22 14:42 boinc_mmap_file -rw-rw-r--. 1 grid grid 537 Aug 22 14:34 boinc_task_state.xml -rw-rw-r--. 1 grid grid 221186615 Aug 22 11:31 EVNT.18605781._000461.pool.root.1 -rw-------. 1 grid grid 149978 Aug 22 14:42 heartbeat.json -rw-rw-r--. 1 grid grid 5866 Aug 22 11:31 init_data.xml -rw-rw-r--. 1 grid grid 261624 Aug 22 11:31 input.tar.gz -rw-rw-r--. 1 grid grid 112 Aug 22 11:31 job.xml -rw-------. 1 grid grid 676929 Aug 22 14:43 log.18722432._022197.job.log.1 -rw-------. 1 grid grid 858278 Aug 22 14:42 log.18722432._022197.job.log.tgz.1 -rw-------. 1 grid grid 391 Aug 22 14:43 output.list -rw-------. 1 grid grid 2957 Aug 13 12:59 pandaJobData.out drwx------. 3 grid grid 174 Aug 7 13:02 pilot2 -rw-r--r--. 1 grid grid 253018 Aug 13 12:32 pilot2.tar.gz -rw-------. 1 grid grid 10953 Aug 22 14:42 pilotlog.txt -rw-r--r--. 1 grid grid 4468 Aug 13 12:57 queuedata.json -rw-rw-r--. 1 grid grid 815 Aug 22 11:31 RTE.tar.gz -rwxr-xr-x. 1 grid grid 8466 Aug 22 11:31 run_atlas -rwx------. 1 grid grid 12641 Aug 13 12:59 runpilot2-wrapper.sh -rw-rw-r--. 1 grid grid 692 Aug 22 14:43 runtime_log -rw-rw-r--. 1 grid grid 6807 Aug 22 14:43 runtime_log.err drwxrwx--x. 2 grid grid 131 Aug 22 14:43 shared -rw-rw-r--. 1 grid grid 8688 Aug 22 11:31 start_atlas.sh -rw-rw-r--. 1 grid grid 19239 Aug 22 14:43 stderr.txt -rw-rw-r--. 1 grid grid 107 Aug 22 11:31 wrapper_26015_x86_64-pc-linux-gnu -rw-rw-r--. 1 grid grid 28 Aug 22 14:42 wrapper_checkpoint.txt -rw-------. 1 grid grid 517 Aug 22 14:43 zjeKDmnhjHvnShfckohDCDFpABFKDmABFKDmbtLaDmABFKDm6ZTVHm.diag 2019-08-22 14:43:00,420: running start_atlas return value is 0 2019-08-22 14:43:00,420: Parent exit 0 2019-08-22 14:43:00,422: child process exit 0 14:43:00 (13984): run_atlas exited; CPU time 42912.254981 14:43:00 (13984): called boinc_finish(0) </stderr_txt> ]]>
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