Name | fRjLDmE1LPvnShfckohDCDFpABFKDmABFKDm3csUDmABFKDmi3ij2m_1 |
Workunit | 1928554 |
Created | 4 Sep 2019, 7:27:45 UTC |
Sent | 4 Sep 2019, 7:59:03 UTC |
Report deadline | 7 Sep 2019, 19:59:03 UTC |
Received | 4 Sep 2019, 8:36:58 UTC |
Server state | Over |
Outcome | Success |
Client state | Done |
Exit status | 0 (0x00000000) |
Computer ID | 3860 |
Run time | 37 min 37 sec |
CPU time | 45 min 52 sec |
Validate state | Valid |
Credit | 59.88 |
Device peak FLOPS | 11.46 GFLOPS |
Application version | ATLAS Simulation v0.72 (native_mt) x86_64-pc-linux-gnu |
Peak working set size | 1.84 GB |
Peak swap size | 13.08 GB |
Peak disk usage | 731.00 MB |
<core_client_version>7.14.2</core_client_version> <![CDATA[ <stderr_txt> 09:59:36 (63207): wrapper (7.7.26015): starting 09:59:36 (63207): wrapper: running run_atlas (--nthreads 2) 2019-09-04 09:59:36,869: singularity image is /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 2019-09-04 09:59:36,869: sys.argv = ['run_atlas', '--nthreads', '2'] 2019-09-04 09:59:36,871: THREADS=2 2019-09-04 09:59:36,872: Checking for CVMFS 2019-09-04 09:59:40,783: CVMFS is installed 2019-09-04 09:59:40,787: OS:cat: /etc/redhat-release: Datei oder Verzeichnis nicht gefunden 2019-09-04 09:59:40,787: This is not SLC6, need to run with Singularity.... 2019-09-04 09:59:40,787: Checking Singularity... 2019-09-04 09:59:40,790: Singularity seems to be installed but not working: sh: singularity: Kommando nicht gefunden. 2019-09-04 09:59:40,790: Will use version from CVMFS 2019-09-04 09:59:40,790: Testing the function of Singularity... 2019-09-04 09:59:40,790: Checking singularity with cmd:/cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 hostname 2019-09-04 09:59:44,048: Singularity Works... 2019-09-04 09:59:44,049: copy /var/lib/boinc/slots/25/shared/ATLAS.root_0 2019-09-04 09:59:44,438: copy /var/lib/boinc/slots/25/shared/input.tar.gz 2019-09-04 09:59:44,438: copy /var/lib/boinc/slots/25/shared/RTE.tar.gz 2019-09-04 09:59:44,439: copy /var/lib/boinc/slots/25/shared/start_atlas.sh 2019-09-04 09:59:44,439: export ATHENA_PROC_NUMBER=2; 2019-09-04 09:59:44,467: start atlas job with PandaID=4002876565 2019-09-04 09:59:44,467: cmd = /cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec --pwd /var/lib/boinc/slots/25 -B /cvmfs,/var /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sh start_atlas.sh > runtime_log 2> runtime_log.err 2019-09-04 10:37:12,529: running cmd return value is 0 2019-09-04 10:37:12,530: Moving ./HITS.000649-3227568-23414._078090.pool.root.1 to shared/HITS.pool.root.1 2019-09-04 10:37:12,530: *****************The last 100 lines of the pilot log****************** 2019-09-04 10:37:12,538: 2019-09-04 08:35:58,612 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 6444 2019-09-04 08:35:58,612 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: 6444 2019-09-04 08:35:58,612 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 2 2019-09-04 08:35:58,612 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False 2019-09-04 08:35:58,612 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-09-04 08:35:58,612 | INFO | retrieve | pilot.util.auxiliary | make_job_report | 2019-09-04 08:35:58,613 | INFO | retrieve | pilot.control.job | has_job_completed | job 4002876565 has completed 2019-09-04 08:35:58,613 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called 2019-09-04 08:35:58,619 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /var/lib/boinc/slots/25/PanDA_Pilot-4002876565 2019-09-04 08:35:59,624 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [6444] 2019-09-04 08:35:59,625 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 6444 2019-09-04 08:35:59,625 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes 2019-09-04 08:36:00,630 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes 2019-09-04 08:36:00,631 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=6444 2019-09-04 08:36:00,707 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [6444] (in reverse order) 2019-09-04 08:36:00,802 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s) 2019-09-04 08:36:00,802 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs 2019-09-04 08:36:00,802 | INFO | retrieve | pilot.control.job | retrieve | ready for new job 2019-09-04 08:36:00,802 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging No handlers could be found for logger "pilot.util.mpi" 2019-09-04 08:36:00,814 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | **************************************** 2019-09-04 08:36:00,814 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | *** PanDA Pilot version 2.1.24 (1) *** 2019-09-04 08:36:00,814 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | **************************************** 2019-09-04 08:36:00,814 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | 2019-09-04 08:36:00,816 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | pilot is running in a VM 2019-09-04 08:36:00,816 | INFO | retrieve | pilot.util.auxiliary | display_architecture_info | architecture information: 2019-09-04 08:36:01,063 | INFO | retrieve | pilot.util.auxiliary | display_architecture_info | LSB Version: :base-4.0-amd64:base-4.0-noarch:core-4.0-amd64:core-4.0-noarch Distributor ID: ScientificCERNSLC Description: Scientific Linux CERN SLC release 6.10 (Carbon) Release: 6.10 Codename: Carbon 2019-09-04 08:36:01,064 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | **************************************** 2019-09-04 08:36:10,712 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 61 s) 2019-09-04 08:36:11,612 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /var/lib/boinc/slots/25 2019-09-04 08:36:11,646 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (16602103808 B) 2019-09-04 08:36:11,646 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job 2019-09-04 08:36:11,647 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished 2019-09-04 08:36:11,661 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished 2019-09-04 08:36:11,662 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration 2019-09-04 08:36:11,675 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration 2019-09-04 08:36:11,681 | WARNING | job_monitor | pilot.util.common | should_abort | job:job_monitor:received graceful stop - abort after this iteration 2019-09-04 08:36:11,936 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set 2019-09-04 08:36:11,937 | DEBUG | data | pilot.control.data | control | [data] control thread has finished 2019-09-04 08:36:12,045 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 14 threads 2019-09-04 08:36:12,046 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140565916526336)>, <ExcThread(job, started 140565695977216)>, <ExcThread(queue_monitor, started 140565287008000)>, <ExcThread(copytool_in, started 140564683028224)>, <ExcThread(queue_monitoring, started 140565253437184)>, <ExcThread(copytool_out, started 140565645620992)>, <ExcThread(failed_post, started 140565245044480)>, <ExcThread(validate_pre, started 140565278615296)>, <ExcThread(execute_payloads, started 140565236651776)>, <ExcThread(payload, started 140565637228288)>, <ExcThread(job_monitor, started 140565654013696)>, <ExcThread(monitor, started 140565270222592)>, <ExcThread(create_data_payload, started 140565679191808)>, <ExcThread(validate_post, started 140565261829888)>] 2019-09-04 08:36:12,119 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished 2019-09-04 08:36:12,184 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended 2019-09-04 08:36:12,357 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 12 threads 2019-09-04 08:36:12,357 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140565916526336)>, <ExcThread(job, started 140565695977216)>, <ExcThread(queue_monitor, started 140565287008000)>, <ExcThread(copytool_in, started 140564683028224)>, <ExcThread(queue_monitoring, started 140565253437184)>, <ExcThread(copytool_out, started 140565645620992)>, <ExcThread(failed_post, started 140565245044480)>, <ExcThread(validate_pre, started 140565278615296)>, <ExcThread(execute_payloads, started 140565236651776)>, <ExcThread(payload, started 140565637228288)>, <ExcThread(job_monitor, started 140565654013696)>, <ExcThread(create_data_payload, started 140565679191808)>] 2019-09-04 08:36:12,375 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished 2019-09-04 08:36:12,632 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished 2019-09-04 08:36:12,659 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 10 threads 2019-09-04 08:36:12,659 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140565916526336)>, <ExcThread(job, started 140565695977216)>, <ExcThread(queue_monitor, started 140565287008000)>, <ExcThread(queue_monitoring, started 140565253437184)>, <ExcThread(copytool_out, started 140565645620992)>, <ExcThread(failed_post, started 140565245044480)>, <ExcThread(execute_payloads, started 140565236651776)>, <ExcThread(payload, started 140565637228288)>, <ExcThread(job_monitor, started 140565654013696)>, <ExcThread(create_data_payload, started 140565679191808)>] 2019-09-04 08:36:12,675 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished 2019-09-04 08:36:12,728 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set 2019-09-04 08:36:12,728 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished 2019-09-04 08:36:12,778 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set 2019-09-04 08:36:12,778 | DEBUG | job | pilot.control.job | control | [job] control thread has finished 2019-09-04 08:36:12,792 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 7 threads 2019-09-04 08:36:12,792 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140565916526336)>, <ExcThread(queue_monitor, started 140565287008000)>, <ExcThread(queue_monitoring, started 140565253437184)>, <ExcThread(failed_post, started 140565245044480)>, <ExcThread(execute_payloads, started 140565236651776)>, <ExcThread(job_monitor, started 140565654013696)>, <ExcThread(create_data_payload, started 140565679191808)>] 2019-09-04 08:36:12,832 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished 2019-09-04 08:36:12,865 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished 2019-09-04 08:36:12,893 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 5 threads 2019-09-04 08:36:12,894 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140565916526336)>, <ExcThread(queue_monitor, started 140565287008000)>, <ExcThread(queue_monitoring, started 140565253437184)>, <ExcThread(failed_post, started 140565245044480)>, <ExcThread(job_monitor, started 140565654013696)>] 2019-09-04 08:36:12,944 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished 2019-09-04 08:36:12,994 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 4 threads 2019-09-04 08:36:12,995 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140565916526336)>, <ExcThread(queue_monitor, started 140565287008000)>, <ExcThread(queue_monitoring, started 140565253437184)>, <ExcThread(job_monitor, started 140565654013696)>] 2019-09-04 08:36:13,124 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration 2019-09-04 08:36:13,124 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished 2019-09-04 08:36:13,196 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 3 threads 2019-09-04 08:36:13,196 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140565916526336)>, <ExcThread(queue_monitoring, started 140565253437184)>, <ExcThread(job_monitor, started 140565654013696)>] 2019-09-04 08:36:14,668 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished 2019-09-04 08:36:14,728 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 2 threads 2019-09-04 08:36:14,728 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140565916526336)>, <ExcThread(job_monitor, started 140565654013696)>] 2019-09-04 08:37:11,784 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 122 s) 2019-09-04 08:37:11,784 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished 2019-09-04 08:37:11,875 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0) 2019-09-04 08:37:11,876 | INFO | MainThread | root | wrap_up | traces error code: 0 2019-09-04 08:37:11,876 | INFO | MainThread | root | wrap_up | pilot has finished 2019-09-04 08:37:12 UTC [wrapper] ==== pilot stdout END ==== 2019-09-04 08:37:12 UTC [wrapper] ==== wrapper stdout RESUME ==== 2019-09-04 08:37:12 UTC [wrapper] Pilot exit status: 0 2019-09-04 08:37:12 UTC [wrapper] STATUSCODE: 0 2019-09-04 08:37:12 UTC [wrapper] apfmon messages muted ---- find pandaID.out ---- insgesamt 48 -rw------- 1 boinc boinc 11357 25. Jul 16:38 LICENSE drwx------ 1 boinc boinc 196 4. Sep 10:00 pilot -rwx------ 1 boinc boinc 20098 22. Aug 11:01 pilot.py -rw------- 1 boinc boinc 8 23. Aug 15:01 PILOTVERSION -rw------- 1 boinc boinc 2251 25. Jul 16:38 README.md -rw------- 1 boinc boinc 760 22. Aug 11:01 setup.py -rw------- 1 boinc boinc 221 25. Jul 16:38 TODO.md 2019-09-04 08:37:12 UTC [wrapper] Test setup, not cleaning 2019-09-04 08:37:12 UTC [wrapper] ==== wrapper stdout END ==== 2019-09-04 08:37:12 UTC [wrapper] ==== wrapper stderr END ==== 2019-09-04 08:37:12 UTC [wrapper] wrapper wrapperexiting ec=0, duration=2246 2019-09-04 08:37:12 UTC [wrapper] apfmon messages muted 2019-09-04 10:37:12,566: ***************diag file************ 2019-09-04 10:37:12,566: runtimeenvironments=APPS/HEP/ATLAS-SITE; Processors=1 WallTime=2246.08s KernelTime=130.55s UserTime=2752.19s CPUUsage=128% MaxResidentMemory=1978900kB AverageResidentMemory=0kB AverageTotalMemory=0kB AverageUnsharedMemory=0kB AverageUnsharedStack=0kB AverageSharedMemory=0kB PageSize=4096B MajorPageFaults=150907 MinorPageFaults=6176356 Swaps=0 ForcedSwitches=511092 WaitSwitches=3862858 Inputs=86889288 Outputs=94472 SocketReceived=0 SocketSent=0 Signals=0 nodename=uwe_werths@vagabond-vm exitcode=0 2019-09-04 10:37:12,576: ******************************WorkDir*********************** 2019-09-04 10:37:12,576: insgesamt 369460 drwxrwx--x 1 boinc boinc 1120 4. Sep 10:37 . drwxrwx--x 1 boinc boinc 324 4. Sep 02:06 .. -rw------- 1 boinc boinc 7487969 4. Sep 10:00 agis_ddmendpoints.json -rw------- 1 boinc boinc 4152142 4. Sep 10:00 agis_schedconf.cvmfs.json drwx------ 1 boinc boinc 0 4. Sep 09:59 .alrb drwxr-xr-x 1 boinc boinc 6 4. Sep 09:59 APPS -rw------- 1 boinc boinc 543 4. Sep 09:59 .asetup -rw------- 1 boinc boinc 829 4. Sep 10:02 .asetup.save -rw-r--r-- 1 boinc boinc 0 4. Sep 09:59 boinc_lockfile -rw-r--r-- 1 boinc boinc 8192 4. Sep 10:37 boinc_mmap_file -rw-r--r-- 1 boinc boinc 536 4. Sep 10:27 boinc_task_state.xml -rw-r--r-- 1 boinc boinc 365251149 4. Sep 09:59 EVNT.14296418._001447.pool.root.1 -rw------- 1 boinc boinc 502 4. Sep 10:37 fRjLDmE1LPvnShfckohDCDFpABFKDmABFKDm3csUDmABFKDmi3ij2m.diag -rw------- 1 boinc boinc 14027 4. Sep 10:35 heartbeat.json -rw-r--r-- 1 boinc boinc 6528 4. Sep 09:59 init_data.xml -rw-r--r-- 1 boinc boinc 262889 4. Sep 09:59 input.tar.gz -rw-r--r-- 1 boinc boinc 112 4. Sep 09:59 job.xml -rw------- 1 boinc boinc 508785 4. Sep 10:35 log.000649-3227568-23414._078090.job.log.tgz.1 -rw------- 1 boinc boinc 224826 4. Sep 10:37 log.14568781._078090.job.log.1 -rw------- 1 boinc boinc 427 4. Sep 10:37 output.list -rw------- 1 boinc boinc 2958 3. Sep 13:19 pandaJobData.out drwx------ 1 boinc boinc 192 23. Aug 15:01 pilot2 -rw-r--r-- 1 boinc boinc 255978 3. Sep 12:32 pilot2.tar.gz -rw------- 1 boinc boinc 11893 4. Sep 10:37 pilotlog.txt -rw------- 1 boinc boinc 5077 4. Sep 10:00 queuedata.json -rw-r--r-- 1 boinc boinc 815 4. Sep 09:59 RTE.tar.gz -rwxr-xr-x 1 boinc boinc 8466 4. Sep 09:59 run_atlas -rwx------ 1 boinc boinc 12641 3. Sep 13:19 runpilot2-wrapper.sh -rw-r--r-- 1 boinc boinc 618 4. Sep 10:37 runtime_log -rw-r--r-- 1 boinc boinc 7082 4. Sep 10:37 runtime_log.err drwxrwx--x 1 boinc boinc 154 4. Sep 10:37 shared -rw-r--r-- 1 boinc boinc 8534 4. Sep 09:59 start_atlas.sh -rw-r--r-- 1 boinc boinc 18705 4. Sep 10:37 stderr.txt -rw-r--r-- 1 boinc boinc 107 4. Sep 09:59 wrapper_26015_x86_64-pc-linux-gnu -rw-r--r-- 1 boinc boinc 26 4. Sep 10:37 wrapper_checkpoint.txt 2019-09-04 10:37:12,576: running start_atlas return value is 0 2019-09-04 10:37:12,576: Parent exit 0 2019-09-04 10:37:12,577: child process exit 0 10:37:12 (63207): run_atlas exited; CPU time 2752.875843 10:37:12 (63207): called boinc_finish(0) </stderr_txt> ]]>
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