Name | hFJKDmR6OPvnShfckohDCDFpABFKDmABFKDmQ6FKDmpBFKDmjAf1Um_1 |
Workunit | 1928611 |
Created | 5 Sep 2019, 15:20:03 UTC |
Sent | 5 Sep 2019, 16:20:57 UTC |
Report deadline | 12 Sep 2019, 16:20:57 UTC |
Received | 5 Sep 2019, 18:14:25 UTC |
Server state | Over |
Outcome | Success |
Client state | Done |
Exit status | 0 (0x00000000) |
Computer ID | 4132 |
Run time | 1 hours 41 min 14 sec |
CPU time | 31 min 32 sec |
Validate state | Valid |
Credit | 597.73 |
Device peak FLOPS | 42.51 GFLOPS |
Application version | ATLAS Simulation v0.72 (native_mt) x86_64-pc-linux-gnu |
Peak working set size | 1.92 GB |
Peak swap size | 20.60 GB |
Peak disk usage | 719.09 MB |
<core_client_version>7.6.31</core_client_version> <![CDATA[ <stderr_txt> 10:29:40 (5292): wrapper (7.7.26015): starting 10:29:40 (5292): wrapper: running run_atlas (--nthreads 12) 2019-09-05 10:29:40,654: singularity image is /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 2019-09-05 10:29:40,654: sys.argv = ['run_atlas', '--nthreads', '12'] 2019-09-05 10:29:40,655: THREADS=12 2019-09-05 10:29:40,664: Checking for CVMFS 2019-09-05 10:29:45,604: CVMFS is installed 2019-09-05 10:29:45,640: OS:cat: /etc/redhat-release: No such file or directory 2019-09-05 10:29:45,640: This is not SLC6, need to run with Singularity.... 2019-09-05 10:29:45,640: Checking Singularity... 2019-09-05 10:29:45,675: Singularity is installed, version 2.4.2-dist 2019-09-05 10:29:45,676: Testing the function of Singularity... 2019-09-05 10:29:45,676: Checking singularity with cmd:singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 hostname 2019-09-05 10:29:50,220: Singularity Works... 2019-09-05 10:29:50,220: copy /var/lib/boinc2/slots/6/shared/RTE.tar.gz 2019-09-05 10:29:50,220: copy /var/lib/boinc2/slots/6/shared/ATLAS.root_0 2019-09-05 10:29:51,097: copy /var/lib/boinc2/slots/6/shared/input.tar.gz 2019-09-05 10:29:51,098: copy /var/lib/boinc2/slots/6/shared/start_atlas.sh 2019-09-05 10:29:51,098: export ATHENA_PROC_NUMBER=12; 2019-09-05 10:29:51,188: start atlas job with PandaID=4002876565 2019-09-05 10:29:51,188: cmd = singularity exec --pwd /var/lib/boinc2/slots/6 -B /cvmfs,/var /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sh start_atlas.sh > runtime_log 2> runtime_log.err 2019-09-05 12:10:53,726: running cmd return value is 0 2019-09-05 12:10:53,727: Moving ./HITS.000649-3283123-2614._078090.pool.root.1 to shared/HITS.pool.root.1 2019-09-05 12:10:53,727: *****************The last 100 lines of the pilot log****************** 2019-09-05 12:10:53,730: 2019-09-05 18:10:15,972 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK 2019-09-05 18:10:15,973 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 1902 s 2019-09-05 18:10:15,973 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 10 2019-09-05 18:10:15,973 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0 2019-09-05 18:10:15,973 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 13839 2019-09-05 18:10:15,973 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: 13839 2019-09-05 18:10:15,973 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 12 2019-09-05 18:10:15,973 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False 2019-09-05 18:10:15,973 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-09-05 18:10:15,973 | INFO | retrieve | pilot.util.auxiliary | make_job_report | 2019-09-05 18:10:15,973 | INFO | retrieve | pilot.control.job | has_job_completed | job 4002876565 has completed 2019-09-05 18:10:15,973 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called 2019-09-05 18:10:15,975 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /var/lib/boinc2/slots/6/PanDA_Pilot-4002876565 2019-09-05 18:10:16,980 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [13839] 2019-09-05 18:10:16,980 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 13839 2019-09-05 18:10:16,980 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes 2019-09-05 18:10:17,983 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes 2019-09-05 18:10:17,984 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=13839 2019-09-05 18:10:18,065 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [13839] (in reverse order) 2019-09-05 18:10:18,121 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s) 2019-09-05 18:10:18,121 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs 2019-09-05 18:10:18,121 | INFO | retrieve | pilot.control.job | retrieve | ready for new job 2019-09-05 18:10:18,122 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging No handlers could be found for logger "pilot.util.mpi" 2019-09-05 18:10:18,125 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | **************************************** 2019-09-05 18:10:18,125 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | *** PanDA Pilot version 2.1.24 (1) *** 2019-09-05 18:10:18,125 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | **************************************** 2019-09-05 18:10:18,125 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | 2019-09-05 18:10:18,126 | INFO | retrieve | pilot.util.auxiliary | display_architecture_info | architecture information: 2019-09-05 18:10:18,383 | INFO | retrieve | pilot.util.auxiliary | display_architecture_info | LSB Version: :base-4.0-amd64:base-4.0-noarch:core-4.0-amd64:core-4.0-noarch Distributor ID: ScientificCERNSLC Description: Scientific Linux CERN SLC release 6.10 (Carbon) Release: 6.10 Codename: Carbon 2019-09-05 18:10:18,383 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | **************************************** 2019-09-05 18:10:20,667 | INFO | monitor | pilot.control.monitor | control | 5825 s have passed since pilot start 2019-09-05 18:10:28,936 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /var/lib/boinc2/slots/6 2019-09-05 18:10:28,963 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (292653367296 B) 2019-09-05 18:10:28,963 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job 2019-09-05 18:10:28,963 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished 2019-09-05 18:10:28,994 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration 2019-09-05 18:10:29,051 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration 2019-09-05 18:10:29,121 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished 2019-09-05 18:10:29,122 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished 2019-09-05 18:10:29,256 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 14 threads 2019-09-05 18:10:29,257 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139705722513152)>, <ExcThread(job, started 139705501964032)>, <ExcThread(queue_monitor, started 139704976516864)>, <ExcThread(execute_payloads, started 139704347391744)>, <ExcThread(job_monitor, started 139704993302272)>, <ExcThread(failed_post, started 139704968124160)>, <ExcThread(copytool_out, started 139705404348160)>, <ExcThread(validate_post, started 139704984909568)>, <ExcThread(data, started 139705412740864)>, <ExcThread(queue_monitoring, started 139705018480384)>, <ExcThread(validate, started 139705421133568)>, <ExcThread(monitor, started 139705370777344)>, <ExcThread(validate_pre, started 139705379170048)>, <ExcThread(payload, started 139705395955456)>] 2019-09-05 18:10:29,396 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished 2019-09-05 18:10:29,419 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set 2019-09-05 18:10:29,419 | DEBUG | data | pilot.control.data | control | [data] control thread has finished 2019-09-05 18:10:29,631 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set 2019-09-05 18:10:29,631 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished 2019-09-05 18:10:29,663 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished 2019-09-05 18:10:29,668 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 10 threads 2019-09-05 18:10:29,668 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139705722513152)>, <ExcThread(job, started 139705501964032)>, <ExcThread(queue_monitor, started 139704976516864)>, <ExcThread(execute_payloads, started 139704347391744)>, <ExcThread(job_monitor, started 139704993302272)>, <ExcThread(copytool_out, started 139705404348160)>, <ExcThread(queue_monitoring, started 139705018480384)>, <ExcThread(validate, started 139705421133568)>, <ExcThread(monitor, started 139705370777344)>, <ExcThread(validate_pre, started 139705379170048)>] 2019-09-05 18:10:29,704 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended 2019-09-05 18:10:29,871 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 9 threads 2019-09-05 18:10:29,871 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139705722513152)>, <ExcThread(job, started 139705501964032)>, <ExcThread(queue_monitor, started 139704976516864)>, <ExcThread(execute_payloads, started 139704347391744)>, <ExcThread(job_monitor, started 139704993302272)>, <ExcThread(copytool_out, started 139705404348160)>, <ExcThread(queue_monitoring, started 139705018480384)>, <ExcThread(validate, started 139705421133568)>, <ExcThread(validate_pre, started 139705379170048)>] 2019-09-05 18:10:29,881 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished 2019-09-05 18:10:29,976 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished 2019-09-05 18:10:30,004 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set 2019-09-05 18:10:30,004 | DEBUG | job | pilot.control.job | control | [job] control thread has finished 2019-09-05 18:10:30,013 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 6 threads 2019-09-05 18:10:30,013 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139705722513152)>, <ExcThread(queue_monitor, started 139704976516864)>, <ExcThread(job_monitor, started 139704993302272)>, <ExcThread(copytool_out, started 139705404348160)>, <ExcThread(queue_monitoring, started 139705018480384)>, <ExcThread(validate_pre, started 139705379170048)>] 2019-09-05 18:10:30,056 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished 2019-09-05 18:10:30,115 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 5 threads 2019-09-05 18:10:30,116 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139705722513152)>, <ExcThread(queue_monitor, started 139704976516864)>, <ExcThread(job_monitor, started 139704993302272)>, <ExcThread(queue_monitoring, started 139705018480384)>, <ExcThread(validate_pre, started 139705379170048)>] 2019-09-05 18:10:30,459 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished 2019-09-05 18:10:30,476 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration 2019-09-05 18:10:30,477 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished 2019-09-05 18:10:30,520 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 3 threads 2019-09-05 18:10:30,520 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139705722513152)>, <ExcThread(job_monitor, started 139704993302272)>, <ExcThread(queue_monitoring, started 139705018480384)>] 2019-09-05 18:10:31,996 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished 2019-09-05 18:10:32,036 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 2 threads 2019-09-05 18:10:32,037 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139705722513152)>, <ExcThread(job_monitor, started 139704993302272)>] 2019-09-05 18:10:53,171 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 62 s) 2019-09-05 18:10:53,172 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished 2019-09-05 18:10:53,176 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0) 2019-09-05 18:10:53,176 | INFO | MainThread | root | wrap_up | traces error code: 0 2019-09-05 18:10:53,176 | INFO | MainThread | root | wrap_up | pilot has finished 2019-09-05 18:10:53 UTC [wrapper] ==== pilot stdout END ==== 2019-09-05 18:10:53 UTC [wrapper] ==== wrapper stdout RESUME ==== 2019-09-05 18:10:53 UTC [wrapper] Pilot exit status: 0 2019-09-05 18:10:53 UTC [wrapper] STATUSCODE: 0 2019-09-05 18:10:53 UTC [wrapper] apfmon messages muted ---- find pandaID.out ---- total 52 -rw-rw-r-- 1 320 320 11357 Jul 25 08:38 LICENSE drwxrwxr-x 14 320 320 4096 Sep 5 10:33 pilot -rwxr-xr-x 1 320 320 20098 Aug 22 03:01 pilot.py -rw-r--r-- 1 320 320 8 Aug 23 07:01 PILOTVERSION -rw-rw-r-- 1 320 320 2251 Jul 25 08:38 README.md -rw-r--r-- 1 320 320 760 Aug 22 03:01 setup.py -rw-rw-r-- 1 320 320 221 Jul 25 08:38 TODO.md 2019-09-05 18:10:53 UTC [wrapper] Test setup, not cleaning 2019-09-05 18:10:53 UTC [wrapper] ==== wrapper stdout END ==== 2019-09-05 18:10:53 UTC [wrapper] ==== wrapper stderr END ==== 2019-09-05 18:10:53 UTC [wrapper] wrapper wrapperexiting ec=0, duration=6058 2019-09-05 18:10:53 UTC [wrapper] apfmon messages muted 2019-09-05 12:10:53,732: ***************diag file************ 2019-09-05 12:10:53,732: runtimeenvironments=APPS/HEP/ATLAS-SITE; Processors=1 WallTime=6057.78s KernelTime=84.52s UserTime=1892.06s CPUUsage=32% MaxResidentMemory=2027916kB AverageResidentMemory=0kB AverageTotalMemory=0kB AverageUnsharedMemory=0kB AverageUnsharedStack=0kB AverageSharedMemory=0kB PageSize=4096B MajorPageFaults=233699 MinorPageFaults=31616848 Swaps=0 ForcedSwitches=1502264 WaitSwitches=3574431 Inputs=56998912 Outputs=59144 SocketReceived=0 SocketSent=0 Signals=0 nodename=wHewitt@d8 exitcode=0 2019-09-05 12:10:53,734: ******************************WorkDir*********************** 2019-09-05 12:10:53,734: total 369332 drwxrwx--x 7 root root 4096 Sep 5 12:10 . drwxrwxrwx 9 root root 4096 Sep 5 10:29 .. -rw------- 1 root root 7513978 Sep 5 10:33 agis_ddmendpoints.json -rw------- 1 root root 4149836 Sep 5 10:33 agis_schedconf.cvmfs.json drwx------ 2 root root 4096 Sep 5 10:30 .alrb drwxr-xr-x 3 root root 4096 Sep 5 10:29 APPS -rw------- 1 root root 543 Sep 5 10:30 .asetup -rw------- 1 root root 829 Sep 5 10:37 .asetup.save drwx------ 2 root root 4096 Sep 5 10:35 .asetup-sysbin_34535 -rw-r--r-- 1 root root 0 Sep 5 10:29 boinc_lockfile -rw-r--r-- 1 root root 8192 Sep 5 12:10 boinc_mmap_file -rw-r--r-- 1 root root 536 Sep 5 12:08 boinc_task_state.xml -rw-r--r-- 1 root root 365251149 Sep 5 10:29 EVNT.14296418._001447.pool.root.1 -rw------- 1 root root 13416 Sep 5 12:10 heartbeat.json -rw------- 1 root root 490 Sep 5 12:10 hFJKDmR6OPvnShfckohDCDFpABFKDmABFKDmQ6FKDmpBFKDmjAf1Um.diag -rw-r--r-- 1 root root 8451 Sep 5 10:29 init_data.xml -rw-r--r-- 1 root root 262887 Sep 5 10:29 input.tar.gz -rw-r--r-- 1 root root 112 Sep 5 10:29 job.xml -rw------- 1 root root 183176 Sep 5 12:10 log.000649-3283123-2614._078090.job.log.tgz.1 -rw------- 1 root root 362173 Sep 5 12:10 log.14568781._078090.job.log.1 -rw------- 1 root root 424 Sep 5 12:10 output.list -rw------- 1 4871 1028 2948 Sep 3 08:36 pandaJobData.out drwxr-xr-x 3 320 320 4096 Aug 23 07:01 pilot2 -rw-r--r-- 1 root root 255978 Sep 3 07:35 pilot2.tar.gz -rw------- 1 root root 10786 Sep 5 12:10 pilotlog.txt -rw------- 1 root root 5077 Sep 5 10:33 queuedata.json -rw-r--r-- 1 root root 815 Sep 5 10:29 RTE.tar.gz -rwxr-xr-x 1 root root 8466 Sep 5 10:29 run_atlas -rwx------ 1 4871 1028 12641 Sep 3 08:36 runpilot2-wrapper.sh -rw-r--r-- 1 root root 617 Sep 5 12:10 runtime_log -rw-r--r-- 1 root root 6894 Sep 5 12:10 runtime_log.err drwxrwx--x 2 root root 4096 Sep 5 12:10 shared -rw-r--r-- 1 root root 8495 Sep 5 10:29 start_atlas.sh -rw-r--r-- 1 root root 17850 Sep 5 12:10 stderr.txt -rw-r--r-- 1 root root 107 Sep 5 10:29 wrapper_26015_x86_64-pc-linux-gnu -rw-r--r-- 1 root root 26 Sep 5 12:10 wrapper_checkpoint.txt 2019-09-05 12:10:53,734: running start_atlas return value is 0 2019-09-05 12:10:53,734: Parent exit 0 2019-09-05 12:10:53,735: child process exit 0 12:10:53 (5292): run_atlas exited; CPU time 1892.216000 12:10:53 (5292): called boinc_finish(0) </stderr_txt> ]]>
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